FFCP PHASE1:Hg19::chr12:117176138..117176147,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=84900|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=25905|TSSclassifier=S|UniProt=F8VZS7|association_with_transcript=0bp_to_ENST00000547718_5end|coexpression_cluster_id=C3243|description=CAGE_peak_3_at_RNFT2_5end|id=chr12:117176138..117176147,+|ontology_enrichment_celltype=CL:0002319!1.60e-10!25;CL:0000133!1.39e-08!59;CL:0000047!6.83e-07!8|ontology_enrichment_celltype_v019=CL:0000540;6.23e-12;6!CL:0000404;6.23e-12;6!CL:0002319;2.17e-11;25!CL:0002321;2.97e-07;15|ontology_enrichment_celltype_v019_2=CL:0000047,7.87e-16,8;CL:0000540,1.03e-11,6;CL:0000031,1.03e-11,6;CL:0000404,1.03e-11,6;CL:0002319,2.54e-11,25;CL:0000133,6.05e-11,59;CL:0000221,5.22e-08,72;CL:0002322,5.83e-07,5|ontology_enrichment_development_v019=CL:0000031;6.23e-12;6!UBERON:0006601;6.59e-12;82|ontology_enrichment_disease=DOID:0050687!2.07e-14!143;DOID:162!8.46e-12!235;DOID:14566!1.19e-11!239;DOID:305!1.88e-11!106|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!8.39e-38!94;UBERON:0001016!8.39e-38!94;UBERON:0005743!1.86e-35!86;UBERON:0001017!4.39e-34!82;UBERON:0000955!3.46e-27!69;UBERON:0006238!3.46e-27!69;UBERON:0001049!1.57e-26!57;UBERON:0005068!1.57e-26!57;UBERON:0006241!1.57e-26!57;UBERON:0007135!1.57e-26!57;UBERON:0002346!4.63e-24!90;UBERON:0003075!8.02e-23!86;UBERON:0007284!8.02e-23!86;UBERON:0002616!1.69e-22!59;UBERON:0002780!3.49e-22!41;UBERON:0001890!3.49e-22!41;UBERON:0006240!3.49e-22!41;UBERON:0003080!3.63e-21!42;UBERON:0003056!1.59e-20!61;UBERON:0000924!5.53e-20!173;UBERON:0006601!5.53e-20!173;UBERON:0004121!7.45e-19!169;UBERON:0001893!1.36e-18!34;UBERON:0002020!3.12e-18!34;UBERON:0003528!3.12e-18!34;UBERON:0000033!3.40e-18!123;UBERON:0002791!7.35e-18!33;UBERON:0000153!8.39e-18!129;UBERON:0007811!8.39e-18!129;UBERON:0001869!1.05e-17!32;UBERON:0000956!1.89e-13!25;UBERON:0000203!1.89e-13!25;UBERON:0002619!2.41e-12!22;UBERON:0001950!1.42e-11!20|ontology_enrichment_uberon_v019=UBERON:0002791;1.94e-29;32!UBERON:0001869;5.07e-29;32!UBERON:0001893;8.38e-28;34!UBERON:0003528;4.05e-27;34!UBERON:0002020;4.05e-27;34!UBERON:0002780;4.86e-26;41!UBERON:0001890;4.86e-26;41!UBERON:0001950;7.14e-23;20!UBERON:0000073;1.72e-22;53!UBERON:0002616;1.72e-22;53!UBERON:0000956;2.61e-22;25!UBERON:0000203;2.61e-22;25!UBERON:0000955;5.94e-22;68!UBERON:0002619;1.81e-20;22!UBERON:0001016;1.17e-18;83!UBERON:0001017;1.12e-17;75!UBERON:0002420;1.63e-10;9!UBERON:0000125;1.63e-10;9!UBERON:0007245;1.63e-10;9!UBERON:0002308;1.63e-10;9!UBERON:0010009;1.63e-10;9!UBERON:0010011;1.63e-10;9!UBERON:0000454;1.63e-10;9!UBERON:0009663;1.96e-10;7!UBERON:0000200;3.25e-09;6!UBERON:0000369;3.26e-09;4!UBERON:0002435;3.26e-09;4!UBERON:0000204;3.26e-09;4!UBERON:0002021;1.75e-07;5!UBERON:0001870;2.27e-07;3!UBERON:0001894;2.61e-07;7!UBERON:0005383;3.01e-07;3!UBERON:0005382;3.01e-07;3!UBERON:0001872;5.05e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.16e-54,89;UBERON:0001017,8.54e-50,81;UBERON:0000073,5.93e-41,53;UBERON:0002616,5.93e-41,53;UBERON:0001049,1.67e-40,56;UBERON:0005068,1.67e-40,56;UBERON:0006241,1.67e-40,56;UBERON:0007135,1.67e-40,56;UBERON:0000955,3.66e-39,68;UBERON:0006238,3.66e-39,68;UBERON:0002780,2.02e-37,41;UBERON:0001890,2.02e-37,41;UBERON:0003080,2.02e-37,41;UBERON:0006240,2.02e-37,41;UBERON:0001893,1.17e-31,34;UBERON:0001869,1.55e-31,32;UBERON:0003528,3.14e-31,34;UBERON:0002020,3.14e-31,34;UBERON:0002791,5.30e-31,32;UBERON:0003075,6.02e-31,82;UBERON:0007284,6.02e-31,82;UBERON:0002346,1.75e-30,86;UBERON:0003056,9.19e-30,61;UBERON:0004121,1.34e-26,171;UBERON:0000924,1.34e-26,171;UBERON:0006601,1.34e-26,171;UBERON:0010371,3.04e-23,104;UBERON:0001950,4.35e-23,20;UBERON:0000956,2.10e-22,25;UBERON:0000203,2.10e-22,25;UBERON:0011216,2.79e-21,223;UBERON:0002619,1.16e-20,22;UBERON:0010314,7.76e-16,132;UBERON:0007023,5.18e-11,114;UBERON:0002420,1.25e-10,9;UBERON:0007245,1.25e-10,9;UBERON:0010009,1.25e-10,9;UBERON:0010011,1.25e-10,9;UBERON:0000454,1.25e-10,9;UBERON:0009663,2.64e-10,7;UBERON:0000125,2.93e-10,9;UBERON:0002308,2.93e-10,9;UBERON:0000025,6.28e-10,192;UBERON:0000369,1.53e-09,4;UBERON:0002435,1.53e-09,4;UBERON:0000204,1.53e-09,4;UBERON:0010082,1.53e-09,4;UBERON:0000200,3.03e-09,6;UBERON:0005383,1.60e-07,3;UBERON:0005382,1.60e-07,3;UBERON:0002021,1.91e-07,5;UBERON:0001870,2.50e-07,3;UBERON:0001872,3.85e-07,5;UBERON:0001894,4.19e-07,7;UBERON:0006222,4.19e-07,7;UBERON:0004732,7.38e-07,13|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,0,0.263766978228454,0.123766352960047,0,0,0,0,0,0.984968464614303,0.204000691244253,0.626909442956176,0.286235987131057,1.64249310087461,1.00434111675842,0.687720651731561,1.39571002064908,0.550975469195755,0,0,0,0,0,0,1.23947520928483,1.70603078984906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77901850772711,0,1.20118796110804,1.72425731986345,0,0,0,0,0,0,0,0,0.590129310341499,0,0,0.334372990781356,0,1.4203434172042,0,0,0.589211814949674,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=84900 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25905 | |||
|TSSclassifier=S | |||
|UniProt=F8VZS7 | |||
|association_with_transcript=0bp_to_ENST00000547718_5end | |||
|coexpression_cluster_id=C3243 | |||
|description=CAGE_peak_3_at_RNFT2_5end | |||
|id=chr12:117176138..117176147,+ | |||
|ontology_enrichment_celltype=CL:0002319!1.60e-10!25;CL:0000133!1.39e-08!59;CL:0000047!6.83e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000540;6.23e-12;6!CL:0000404;6.23e-12;6!CL:0002319;2.17e-11;25!CL:0002321;2.97e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,7.87e-16,8;CL:0000540,1.03e-11,6;CL:0000031,1.03e-11,6;CL:0000404,1.03e-11,6;CL:0002319,2.54e-11,25;CL:0000133,6.05e-11,59;CL:0000221,5.22e-08,72;CL:0002322,5.83e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000031;6.23e-12;6!UBERON:0006601;6.59e-12;82 | |||
|ontology_enrichment_disease=DOID:0050687!2.07e-14!143;DOID:162!8.46e-12!235;DOID:14566!1.19e-11!239;DOID:305!1.88e-11!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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| |||
|short_description=p3@RNFT2 | |||
}} |
Revision as of 21:06, 10 September 2013
Short description: | p3@RNFT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_RNFT2_5end |
Coexpression cluster: | C3243_occipital_temporal_pons_paracentral_insula_parietal_postcentral |
Association with transcript: | 0bp_to_ENST00000547718_5end |
EntrezGene: | RNFT2 |
HGNC: | 25905 |
UniProt: | F8VZS7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 7.87e-16 | 8 |
neuron | 1.03e-11 | 6 |
neuroblast | 1.03e-11 | 6 |
electrically signaling cell | 1.03e-11 | 6 |
neural cell | 2.54e-11 | 25 |
neurectodermal cell | 6.05e-11 | 59 |
ectodermal cell | 5.22e-08 | 72 |
embryonic stem cell | 5.83e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.