FFCP PHASE1:Hg19::chr11:417308..417379,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=59307|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30575|TSSclassifier=S|UniProt=C9JFX4,Q6IA17|association_with_transcript=0bp_to_ENST00000382520,ENST00000397632_5end|description=CAGE_peak_3_at_SIGIRR_5end|id=chr11:417308..417379,-|ontology_enrichment_celltype=CL:0000066!1.98e-13!254;CL:0002076!2.05e-13!43;CL:0000223!6.59e-10!59;CL:0002368!8.66e-08!13;CL:0000039!1.64e-07!7;CL:0000586!1.64e-07!7|ontology_enrichment_celltype_v019=CL:0002076;3.31e-13;42!CL:0002368;8.16e-10;13!CL:0000039;2.56e-09;7!CL:0000586;2.56e-09;7!CL:0002202;3.34e-07;9!CL:0002632;3.34e-07;9|ontology_enrichment_celltype_v019_2=CL:0002076,5.27e-17,42;CL:0000066,1.19e-14,253;CL:0000223,5.83e-13,58;CL:0002368,8.09e-10,13;CL:0000039,2.77e-09,7;CL:0000586,2.77e-09,7;CL:0002202,3.02e-07,9;CL:0002632,3.02e-07,9|ontology_enrichment_development_v019=CL:0000223;3.25e-07;58|ontology_enrichment_disease=DOID:305!1.39e-15!106;DOID:1749!8.36e-10!14;DOID:0050687!1.27e-09!143;DOID:299!3.73e-08!25|ontology_enrichment_disease_v019=DOID:1749;2.37e-12;14!DOID:299;2.15e-10;25!DOID:305;3.74e-08;106|ontology_enrichment_disease_v019_2=DOID:305,2.34e-20,106;DOID:0050687,1.08e-13,143;DOID:1749,2.98e-12,14;DOID:299,2.40e-10,25|ontology_enrichment_uberon=UBERON:0004119!2.57e-16!169;UBERON:0000925!2.57e-16!169;UBERON:0006595!2.57e-16!169;UBERON:0001007!1.91e-14!155;UBERON:0001555!1.91e-14!155;UBERON:0007026!1.91e-14!155;UBERON:0004921!4.76e-13!129;UBERON:0004185!4.76e-13!129;UBERON:0000464!4.89e-11!104;UBERON:0000077!2.23e-10!130;UBERON:0000466!8.42e-10!126;UBERON:0005911!1.05e-09!82;UBERON:0001004!1.25e-09!72;UBERON:0005153!4.85e-09!37;UBERON:0000065!1.09e-07!53;UBERON:0005178!1.18e-07!34;UBERON:0002224!1.18e-07!34;UBERON:0005181!3.13e-07!35;UBERON:0003101!3.30e-07!22;UBERON:0000079!3.30e-07!22;UBERON:0001041!5.38e-07!98;UBERON:0003135!6.92e-07!11;UBERON:0002048!9.94e-07!22;UBERON:0000117!9.94e-07!22;UBERON:0000171!9.94e-07!22;UBERON:0000170!9.94e-07!22;UBERON:0005597!9.94e-07!22;UBERON:0000118!9.94e-07!22|ontology_enrichment_uberon_v019=UBERON:0004921;8.04e-10;33!UBERON:0005409;1.86e-09;22!UBERON:0002048;3.74e-08;22!UBERON:0000117;3.74e-08;22!UBERON:0000171;3.74e-08;22!UBERON:0000170;3.74e-08;22!UBERON:0000160;4.02e-08;17!UBERON:0005178;4.86e-08;34!UBERON:0002224;4.86e-08;34!UBERON:0005181;2.57e-07;35!UBERON:0004807;6.78e-07;22|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.13e-17,160;UBERON:0000925,1.13e-17,160;UBERON:0006595,1.13e-17,160;UBERON:0001007,8.26e-16,145;UBERON:0001555,8.26e-16,145;UBERON:0007026,8.26e-16,145;UBERON:0004921,2.73e-14,118;UBERON:0001004,8.64e-10,74;UBERON:0005178,3.93e-09,34;UBERON:0002224,3.93e-09,34;UBERON:0005911,5.38e-09,82;UBERON:0005153,5.92e-09,37;UBERON:0005181,1.06e-08,35;UBERON:0000915,1.23e-08,52;UBERON:0002048,3.15e-08,22;UBERON:0000117,3.15e-08,22;UBERON:0000171,3.15e-08,22;UBERON:0000170,3.15e-08,22;UBERON:0005597,3.15e-08,22;UBERON:0000118,3.15e-08,22;UBERON:0000160,4.20e-08,17;UBERON:0000065,4.73e-08,54;UBERON:0005409,8.05e-08,25;UBERON:0005157,2.53e-07,47;UBERON:0005156,2.98e-07,59;UBERON:0000990,2.98e-07,59;UBERON:0005177,3.14e-07,101;UBERON:0001041,6.00e-07,87;UBERON:0008947,9.90e-07,38;UBERON:0003258,9.90e-07,38|phase1_expression=0,0,0,0,0,0,0,0,0,4.66894479352867,27.2142455509247,0.436882744260345,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,0.154816123316076,6.43594857135249,3.91567694411725,9.98335827450327,0,0,0,0.553995408531877,0.802177789880567,0.651032612147555,0,0,0,0,0,0.242584061187816,0,0,0,0.28769239232215,0,0,0,0,0,0,0.272906150057846,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0,1.81619850790011,0,0,0,0,0,0,0.300353785683013,0,0,0,0,0,0,0,0.426730222566507,0.400395987036012,0,0.661044872784862,0,0,0.587237189370939,0.382273228125229,0,0.560508562981536,0,4.91774425284583,5.50215067848831,3.28962398399215,2.34061093546949,4.23698946623668,4.73447805734733,0,1.22551502573691,3.24066498222321,3.32300841875432,1.62482318259009,1.79327847615945,1.56071217071854,0.657751618414705,0.276350017785848,0.869409257205157,4.44859689486181,1.87278579662799,2.09071047609954,1.69964014046349,3.06576394881537,1.71813722741315,3.28925599625354,3.18565414324097,0,0,2.86092726247768,2.8157054453972,0,0.947109008176067,0.821127996921047,2.82249440514625,1.33720097891754,2.89648807765598,0,0,0,0,0,0,0,0,0,0,0.087834785693126,2.88153966094968,5.10013403609559,4.82019775619758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,1.31780417436063,0,3.05265836499774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93260853163297,0.272746120590835,1.14721838155602,11.8314494945708,9.40961355082545,10.6898427439957,5.49403591581463,5.80337957013945,5.10968302706162,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,9.9620635219922,0,0.439001141634502,3.37205259772859,2.71428225511403,1.94435734832912,0,0,0,0,0,0,0,0,18.1747011530633,20.6036678902769,0,0,0,0.93733833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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=59307 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30575 | |||
|TSSclassifier=S | |||
|UniProt=C9JFX4,Q6IA17 | |||
|association_with_transcript=0bp_to_ENST00000382520,ENST00000397632_5end | |||
|description=CAGE_peak_3_at_SIGIRR_5end | |||
|id=chr11:417308..417379,- | |||
|ontology_enrichment_celltype=CL:0000066!1.98e-13!254;CL:0002076!2.05e-13!43;CL:0000223!6.59e-10!59;CL:0002368!8.66e-08!13;CL:0000039!1.64e-07!7;CL:0000586!1.64e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0002076;3.31e-13;42!CL:0002368;8.16e-10;13!CL:0000039;2.56e-09;7!CL:0000586;2.56e-09;7!CL:0002202;3.34e-07;9!CL:0002632;3.34e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,5.27e-17,42;CL:0000066,1.19e-14,253;CL:0000223,5.83e-13,58;CL:0002368,8.09e-10,13;CL:0000039,2.77e-09,7;CL:0000586,2.77e-09,7;CL:0002202,3.02e-07,9;CL:0002632,3.02e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000223;3.25e-07;58 | |||
|ontology_enrichment_disease=DOID:305!1.39e-15!106;DOID:1749!8.36e-10!14;DOID:0050687!1.27e-09!143;DOID:299!3.73e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.37e-12;14!DOID:299;2.15e-10;25!DOID:305;3.74e-08;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.34e-20,106;DOID:0050687,1.08e-13,143;DOID:1749,2.98e-12,14;DOID:299,2.40e-10,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.57e-16!169;UBERON:0000925!2.57e-16!169;UBERON:0006595!2.57e-16!169;UBERON:0001007!1.91e-14!155;UBERON:0001555!1.91e-14!155;UBERON:0007026!1.91e-14!155;UBERON:0004921!4.76e-13!129;UBERON:0004185!4.76e-13!129;UBERON:0000464!4.89e-11!104;UBERON:0000077!2.23e-10!130;UBERON:0000466!8.42e-10!126;UBERON:0005911!1.05e-09!82;UBERON:0001004!1.25e-09!72;UBERON:0005153!4.85e-09!37;UBERON:0000065!1.09e-07!53;UBERON:0005178!1.18e-07!34;UBERON:0002224!1.18e-07!34;UBERON:0005181!3.13e-07!35;UBERON:0003101!3.30e-07!22;UBERON:0000079!3.30e-07!22;UBERON:0001041!5.38e-07!98;UBERON:0003135!6.92e-07!11;UBERON:0002048!9.94e-07!22;UBERON:0000117!9.94e-07!22;UBERON:0000171!9.94e-07!22;UBERON:0000170!9.94e-07!22;UBERON:0005597!9.94e-07!22;UBERON:0000118!9.94e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;8.04e-10;33!UBERON:0005409;1.86e-09;22!UBERON:0002048;3.74e-08;22!UBERON:0000117;3.74e-08;22!UBERON:0000171;3.74e-08;22!UBERON:0000170;3.74e-08;22!UBERON:0000160;4.02e-08;17!UBERON:0005178;4.86e-08;34!UBERON:0002224;4.86e-08;34!UBERON:0005181;2.57e-07;35!UBERON:0004807;6.78e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.13e-17,160;UBERON:0000925,1.13e-17,160;UBERON:0006595,1.13e-17,160;UBERON:0001007,8.26e-16,145;UBERON:0001555,8.26e-16,145;UBERON:0007026,8.26e-16,145;UBERON:0004921,2.73e-14,118;UBERON:0001004,8.64e-10,74;UBERON:0005178,3.93e-09,34;UBERON:0002224,3.93e-09,34;UBERON:0005911,5.38e-09,82;UBERON:0005153,5.92e-09,37;UBERON:0005181,1.06e-08,35;UBERON:0000915,1.23e-08,52;UBERON:0002048,3.15e-08,22;UBERON:0000117,3.15e-08,22;UBERON:0000171,3.15e-08,22;UBERON:0000170,3.15e-08,22;UBERON:0005597,3.15e-08,22;UBERON:0000118,3.15e-08,22;UBERON:0000160,4.20e-08,17;UBERON:0000065,4.73e-08,54;UBERON:0005409,8.05e-08,25;UBERON:0005157,2.53e-07,47;UBERON:0005156,2.98e-07,59;UBERON:0000990,2.98e-07,59;UBERON:0005177,3.14e-07,101;UBERON:0001041,6.00e-07,87;UBERON:0008947,9.90e-07,38;UBERON:0003258,9.90e-07,38 | |||
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| |||
|short_description=p3@SIGIRR | |||
}} |
Revision as of 17:47, 10 September 2013
Short description: | p3@SIGIRR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_SIGIRR_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000382520, ENST00000397632_5end |
EntrezGene: | SIGIRR |
HGNC: | 30575 |
UniProt: | C9JFX4Q6IA17 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 5.27e-17 | 42 |
epithelial cell | 1.19e-14 | 253 |
endodermal cell | 5.83e-13 | 58 |
respiratory epithelial cell | 8.09e-10 | 13 |
germ line cell | 2.77e-09 | 7 |
germ cell | 2.77e-09 | 7 |
epithelial cell of tracheobronchial tree | 3.02e-07 | 9 |
epithelial cell of lower respiratory tract | 3.02e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.13e-17 | 160 |
endoderm | 1.13e-17 | 160 |
presumptive endoderm | 1.13e-17 | 160 |
digestive system | 8.26e-16 | 145 |
digestive tract | 8.26e-16 | 145 |
primitive gut | 8.26e-16 | 145 |
subdivision of digestive tract | 2.73e-14 | 118 |
respiratory system | 8.64e-10 | 74 |
thoracic cavity element | 3.93e-09 | 34 |
thoracic cavity | 3.93e-09 | 34 |
endo-epithelium | 5.38e-09 | 82 |
epithelial bud | 5.92e-09 | 37 |
thoracic segment organ | 1.06e-08 | 35 |
thoracic segment of trunk | 1.23e-08 | 52 |
lung | 3.15e-08 | 22 |
respiratory tube | 3.15e-08 | 22 |
respiration organ | 3.15e-08 | 22 |
pair of lungs | 3.15e-08 | 22 |
lung primordium | 3.15e-08 | 22 |
lung bud | 3.15e-08 | 22 |
intestine | 4.20e-08 | 17 |
respiratory tract | 4.73e-08 | 54 |
gastrointestinal system | 8.05e-08 | 25 |
epithelial fold | 2.53e-07 | 47 |
reproductive structure | 2.98e-07 | 59 |
reproductive system | 2.98e-07 | 59 |
trunk region element | 3.14e-07 | 101 |
foregut | 6.00e-07 | 87 |
respiratory primordium | 9.90e-07 | 38 |
endoderm of foregut | 9.90e-07 | 38 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.34e-20 | 106 |
cell type cancer | 1.08e-13 | 143 |
squamous cell carcinoma | 2.98e-12 | 14 |
adenocarcinoma | 2.40e-10 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.