FFCP PHASE1:Hg19::chr11:2154088..2154099,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=-118bp_to_CU674261_5end|coexpression_cluster_id=C172|description=CAGE_peak_5_at_CU674261_5end|id=chr11:2154088..2154099,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000349;1.95e-23;19!CL:0002575;1.12e-12;2!CL:0002536;2.35e-12;2!CL:0002537;3.16e-11;5!CL:0002541;5.09e-09;3!CL:0002564;2.80e-08;3!CL:0000669;9.53e-07;4|ontology_enrichment_celltype_v019_2=CL:0000349,1.93e-23,19;CL:0002575,1.05e-12,2;CL:0002536,2.35e-12,2;CL:0002537,3.11e-11,5;CL:0002541,5.09e-09,3;CL:0002564,2.24e-08,3;CL:0000669,9.26e-07,4;CL:0002599,9.51e-07,1|ontology_enrichment_development_v019=UBERON:0004161;3.10e-08;11!UBERON:0000358;2.73e-07;1!UBERON:0009497;5.58e-07;13|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005631!2.66e-14!14;UBERON:0000158!2.66e-14!14;UBERON:0000478!4.37e-12!24;UBERON:0003124!4.68e-09!7;UBERON:0000481!5.03e-07!347;UBERON:0000305!6.02e-07!7;UBERON:0005256!8.10e-07!143|ontology_enrichment_uberon_v019=UBERON:0005631;6.13e-28;10!UBERON:0000158;6.13e-28;10!UBERON:0000478;1.40e-22;24!UBERON:0000305;1.25e-20;7!UBERON:0003124;5.09e-09;3!UBERON:0000920;5.09e-09;3!UBERON:0002242;2.80e-08;3!UBERON:0002426;3.27e-07;1!UBERON:0003831;3.27e-07;1!UBERON:0003898;3.27e-07;1!UBERON:0004830;3.27e-07;1!UBERON:0003830;3.27e-07;1!UBERON:0005175;3.27e-07;1!UBERON:0001774;3.27e-07;1!UBERON:0001103;3.27e-07;1!UBERON:0002107;4.12e-07;19!UBERON:0006925;4.12e-07;19|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.20e-25,14;UBERON:0000158,1.20e-25,14;UBERON:0000478,1.41e-22,24;UBERON:0000305,1.22e-20,7;UBERON:0004871,4.92e-18,8;UBERON:0000920,5.09e-09,3;UBERON:0002242,2.24e-08,3;UBERON:0003068,2.24e-08,3;UBERON:0002328,2.24e-08,3;UBERON:0004880,2.24e-08,3;UBERON:0003124,3.13e-08,7;UBERON:0002107,3.39e-07,19;UBERON:0006925,3.39e-07,19;UBERON:0008836,3.39e-07,19;UBERON:0002426,3.57e-07,1;UBERON:0003831,3.57e-07,1;UBERON:0003898,3.57e-07,1;UBERON:0004830,3.57e-07,1;UBERON:0003830,3.57e-07,1;UBERON:0005175,3.57e-07,1;UBERON:0001774,3.57e-07,1;UBERON:0001103,3.57e-07,1;UBERON:0010084,3.57e-07,1|phase1_expression=0,0.214100523890983,0,0,0.446961094427288,0,0,0,0,0,0,3.05817920982241,3.9565046734268,0.495065411840187,0.331397375727916,0,0,0,0,0.246242116153576,0.612002073732759,0.313454721478088,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434539556882471,0,0.486634870302636,0.0945348171640679,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302714855289863,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0.494533858557114,0,0,0.168336113954066,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464775771478074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.94017422771084,0,0,0,0,1.35287282397425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0.1466765716419,0,0,0,0,0,0,0,0.799266537048298,0.428933980974443,4.88359444852299,0.823240336780769,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.858840442033979,2.00068208423871,1.62759014219841,0.623912584592421,1.07057393278297,0.946214490203608,0.937131319941706,0,0,1.03473071292505,0,0,0,5.48243240895674,6.86286847621712,0,0,0,0.606255142892519,0,6.65258645325297,0,0,0,0,0,0,0,0,0,0,0,0,1.32945394550784,0,0,0,0.182091168006717,0.262248829918848,0,0.231046011313244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0.096670718292122,0,0.15350367472613,0.551346289938122,0,0,0.0852266274161009,1.60257664164127,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0.190630193923825,0,0,0,0,0.359744915166629,0.274537029736055,0.235624804691373,0,0,0,1.46290121726877,0,0,0.272999822815972,0,0,0,0,0,0,0,0,0,0,0.286822704408103,0.982490410131212,0,0,0,0,0,0.349934720244983,0,0,0,0.564862804660675,0,0,1.33029046061003,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,11.4597352674091,7.42411702081597,5.52889263778618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,15.6310568268641,0.366390373607449,19.7222867126895,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0,0,0,0,0,0,0.067401132980677,6.42062117839031,0,0,0,0,0,1.20990716048664,0,0.31593289814244,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0.90392296312213,0,0,0,0,0,0.426905989478705,1.39866726707491,0,0,3.26030495937733,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.470284307407084,0,0,1.49688046383725,1.56590130924216,1.68508859635462,0.688992370603241,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-118bp_to_CU674261_5end | |||
|coexpression_cluster_id=C172 | |||
|description=CAGE_peak_5_at_CU674261_5end | |||
|id=chr11:2154088..2154099,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.95e-23;19!CL:0002575;1.12e-12;2!CL:0002536;2.35e-12;2!CL:0002537;3.16e-11;5!CL:0002541;5.09e-09;3!CL:0002564;2.80e-08;3!CL:0000669;9.53e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.93e-23,19;CL:0002575,1.05e-12,2;CL:0002536,2.35e-12,2;CL:0002537,3.11e-11,5;CL:0002541,5.09e-09,3;CL:0002564,2.24e-08,3;CL:0000669,9.26e-07,4;CL:0002599,9.51e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0004161;3.10e-08;11!UBERON:0000358;2.73e-07;1!UBERON:0009497;5.58e-07;13 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!2.66e-14!14;UBERON:0000158!2.66e-14!14;UBERON:0000478!4.37e-12!24;UBERON:0003124!4.68e-09!7;UBERON:0000481!5.03e-07!347;UBERON:0000305!6.02e-07!7;UBERON:0005256!8.10e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;6.13e-28;10!UBERON:0000158;6.13e-28;10!UBERON:0000478;1.40e-22;24!UBERON:0000305;1.25e-20;7!UBERON:0003124;5.09e-09;3!UBERON:0000920;5.09e-09;3!UBERON:0002242;2.80e-08;3!UBERON:0002426;3.27e-07;1!UBERON:0003831;3.27e-07;1!UBERON:0003898;3.27e-07;1!UBERON:0004830;3.27e-07;1!UBERON:0003830;3.27e-07;1!UBERON:0005175;3.27e-07;1!UBERON:0001774;3.27e-07;1!UBERON:0001103;3.27e-07;1!UBERON:0002107;4.12e-07;19!UBERON:0006925;4.12e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.20e-25,14;UBERON:0000158,1.20e-25,14;UBERON:0000478,1.41e-22,24;UBERON:0000305,1.22e-20,7;UBERON:0004871,4.92e-18,8;UBERON:0000920,5.09e-09,3;UBERON:0002242,2.24e-08,3;UBERON:0003068,2.24e-08,3;UBERON:0002328,2.24e-08,3;UBERON:0004880,2.24e-08,3;UBERON:0003124,3.13e-08,7;UBERON:0002107,3.39e-07,19;UBERON:0006925,3.39e-07,19;UBERON:0008836,3.39e-07,19;UBERON:0002426,3.57e-07,1;UBERON:0003831,3.57e-07,1;UBERON:0003898,3.57e-07,1;UBERON:0004830,3.57e-07,1;UBERON:0003830,3.57e-07,1;UBERON:0005175,3.57e-07,1;UBERON:0001774,3.57e-07,1;UBERON:0001103,3.57e-07,1;UBERON:0010084,3.57e-07,1 | |||
|phase1_expression=0,0.214100523890983,0,0,0.446961094427288,0,0,0,0,0,0,3.05817920982241,3.9565046734268,0.495065411840187,0.331397375727916,0,0,0,0,0.246242116153576,0.612002073732759,0.313454721478088,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434539556882471,0,0.486634870302636,0.0945348171640679,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302714855289863,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0.494533858557114,0,0,0.168336113954066,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464775771478074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.94017422771084,0,0,0,0,1.35287282397425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0.1466765716419,0,0,0,0,0,0,0,0.799266537048298,0.428933980974443,4.88359444852299,0.823240336780769,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.858840442033979,2.00068208423871,1.62759014219841,0.623912584592421,1.07057393278297,0.946214490203608,0.937131319941706,0,0,1.03473071292505,0,0,0,5.48243240895674,6.86286847621712,0,0,0,0.606255142892519,0,6.65258645325297,0,0,0,0,0,0,0,0,0,0,0,0,1.32945394550784,0,0,0,0.182091168006717,0.262248829918848,0,0.231046011313244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0.096670718292122,0,0.15350367472613,0.551346289938122,0,0,0.0852266274161009,1.60257664164127,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0.190630193923825,0,0,0,0,0.359744915166629,0.274537029736055,0.235624804691373,0,0,0,1.46290121726877,0,0,0.272999822815972,0,0,0,0,0,0,0,0,0,0,0.286822704408103,0.982490410131212,0,0,0,0,0,0.349934720244983,0,0,0,0.564862804660675,0,0,1.33029046061003,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,11.4597352674091,7.42411702081597,5.52889263778618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,15.6310568268641,0.366390373607449,19.7222867126895,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0,0,0,0,0,0,0.067401132980677,6.42062117839031,0,0,0,0,0,1.20990716048664,0,0.31593289814244,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0.90392296312213,0,0,0,0,0,0.426905989478705,1.39866726707491,0,0,3.26030495937733,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.470284307407084,0,0,1.49688046383725,1.56590130924216,1.68508859635462,0.688992370603241,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0.662091970365432,0,0,0,0,0,0,0,0.113312091520126,0,11.9256200020999,0.129282956361551,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0,0,0,0,0,1.05802783107205,0.3062454773532,0.0642292250964595,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0.227662191351298,0.709618961301111,0,0,0,0,0,0,0.156986185701028,0,0.280272163313789,0.913158720509496,0,0,0.357382720883282,0,0,0.695433089210318,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0.307988420568741,4.6392577253528,0.485710993059139,0,1.59160620129095,0,0,0,0,0,0.437119121007915,0,0.245148321753905,0,0,0,0,0,0,0.128915775947154,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0.865253124247578,0,0,0,0,0,0,0,0,0,0,0,0,3.09483760902862,0,0.0620747142958579,0,0,1.41482032270754,0,6.84466602170562,0,0,0.99798106963804,0.0814032686109745,0,0,0.449126010532934,7.03922827210363,0,0.813792356631477,0,0,0 | |||
|short_description=p5@CU674261 | |||
}} |
Revision as of 17:12, 10 September 2013
Short description: | p5@CU674261 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_CU674261_5end |
Coexpression cluster: | C172_chorionic_skeletal_tongue_amniotic_liver_gastrointestinal_Pericytes |
Association with transcript: | -118bp_to_CU674261_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.93e-23 | 19 |
central nervous system pericyte | 1.05e-12 | 2 |
amniotic epithelial cell | 2.35e-12 | 2 |
amnion mesenchymal stem cell | 3.11e-11 | 5 |
chorionic membrane mesenchymal stem cell | 5.09e-09 | 3 |
nucleus pulposus cell of intervertebral disc | 2.24e-08 | 3 |
pericyte cell | 9.26e-07 | 4 |
smooth muscle cell of the esophagus | 9.51e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.20e-25 | 14 |
membranous layer | 1.20e-25 | 14 |
extraembryonic structure | 1.41e-22 | 24 |
amnion | 1.22e-20 | 7 |
somatic layer of lateral plate mesoderm | 4.92e-18 | 8 |
egg chorion | 5.09e-09 | 3 |
nucleus pulposus | 2.24e-08 | 3 |
axial mesoderm | 2.24e-08 | 3 |
notochord | 2.24e-08 | 3 |
chordamesoderm | 2.24e-08 | 3 |
chorion | 3.13e-08 | 7 |
liver | 3.39e-07 | 19 |
digestive gland | 3.39e-07 | 19 |
liver bud | 3.39e-07 | 19 |
chest muscle | 3.57e-07 | 1 |
respiratory system muscle | 3.57e-07 | 1 |
skeletal muscle of trunk | 3.57e-07 | 1 |
respiratory system skeletal muscle | 3.57e-07 | 1 |
thoracic segment muscle | 3.57e-07 | 1 |
chest organ | 3.57e-07 | 1 |
muscle of trunk | 3.57e-07 | 1 |
diaphragm | 3.57e-07 | 1 |
future diaphragm | 3.57e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.