FFCP PHASE1:Hg19::chr11:101981127..101981164,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10413|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16262|TSSclassifier=S|UniProt=E9PRV2,E3WEB6,P46937,Q86T74|association_with_transcript=-27bp_to_ENST00000282441,ENST00000526343,NM_001130145,NM_001195044,NM_006106_5end|coexpression_cluster_id=C3068|description=CAGE_peak_2_at_YAP1_5end|id=chr11:101981127..101981164,+|ontology_enrichment_celltype=CL:0000057!3.77e-09!75;CL:0000066!1.74e-08!254;CL:0000055!3.92e-08!180;CL:0000223!7.59e-08!59|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0000057,1.74e-09,76;CL:0000066,3.46e-08,253;CL:0000223,8.77e-08,58|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004119!5.73e-23!169;UBERON:0000925!5.73e-23!169;UBERON:0006595!5.73e-23!169;UBERON:0000481!2.69e-21!347;UBERON:0001007!1.46e-20!155;UBERON:0001555!1.46e-20!155;UBERON:0007026!1.46e-20!155;UBERON:0003104!3.49e-17!238;UBERON:0009142!3.49e-17!238;UBERON:0000475!3.19e-16!365;UBERON:0000468!9.48e-16!659;UBERON:0003102!8.16e-15!95;UBERON:0000077!1.98e-14!130;UBERON:0004921!6.22e-14!129;UBERON:0004185!6.22e-14!129;UBERON:0002100!1.67e-13!216;UBERON:0000062!1.97e-13!511;UBERON:0001048!3.10e-12!168;UBERON:0000467!9.75e-12!625;UBERON:0000480!1.52e-11!626;UBERON:0005256!1.67e-10!143;UBERON:0000922!3.32e-09!612;UBERON:0000466!1.15e-08!126;UBERON:0000064!1.96e-08!219;UBERON:0002050!2.46e-08!605;UBERON:0005423!2.46e-08!605;UBERON:0000923!4.76e-08!604;UBERON:0005291!4.76e-08!604;UBERON:0006598!4.76e-08!604;UBERON:0002532!4.76e-08!604;UBERON:0000161!5.75e-08!35;UBERON:0001004!6.28e-08!72;UBERON:0000477!1.28e-07!286;UBERON:0005156!1.36e-07!59;UBERON:0000990!1.36e-07!59;UBERON:0001041!1.47e-07!98;UBERON:0001737!1.52e-07!9;UBERON:0005911!1.54e-07!82;UBERON:0003929!5.81e-07!54;UBERON:0000119!7.73e-07!312;UBERON:0000165!9.89e-07!28;UBERON:0000930!9.89e-07!28|ontology_enrichment_uberon_v019=UBERON:0001737;1.44e-07;9!UBERON:0001557;1.44e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.20e-23,160;UBERON:0000925,1.20e-23,160;UBERON:0006595,1.20e-23,160;UBERON:0001007,7.27e-21,145;UBERON:0001555,7.27e-21,145;UBERON:0007026,7.27e-21,145;UBERON:0003102,1.95e-15,99;UBERON:0004921,5.83e-14,118;UBERON:0001048,2.94e-12,160;UBERON:0002100,6.20e-11,199;UBERON:0003104,1.78e-10,160;UBERON:0009142,1.78e-10,160;UBERON:0005256,1.05e-08,122;UBERON:0001004,1.76e-08,74;UBERON:0011216,2.10e-08,223;UBERON:0000161,3.77e-08,36;UBERON:0004923,5.02e-08,66;UBERON:0005156,1.19e-07,59;UBERON:0000990,1.19e-07,59;UBERON:0005911,1.25e-07,82;UBERON:0001737,1.43e-07,9;UBERON:0000922,1.82e-07,592;UBERON:0001041,1.82e-07,87;UBERON:0003929,5.14e-07,54;UBERON:0000165,6.60e-07,29;UBERON:0000930,6.60e-07,29|phase1_expression=16.3510541343501,18.8408461024065,16.0688020669407,11.0080628188443,22.7950158157917,25.2978171989107,2.53299878168311,10.7392378482561,10.9697963843932,7.12628415854376,8.37361401566913,11.5773927228991,11.3419800638235,15.965859531846,16.5698687863958,9.41255205032485,13.2592796165275,16.0668219885222,13.1741855673437,9.48032147191267,16.5240559907845,11.9112794161673,9.15955158819382,14.23494020758,13.6841477158335,0,0,0,0,0,0.928896739896456,16.5495820406207,14.7590900201343,12.201882335504,0,0,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,1.35426486594342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.23779651843358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0.267440195783507,0.434473211648397,19.5045493051169,18.7796240717018,9.58969213826478,15.5418835525363,13.0347856765331,17.3815822752988,6.36228757640879,14.1124112387764,12.3840610484929,15.0775990274543,13.5265569967414,16.6998321259584,6.9216104775583,16.6852999252993,0,0,0,0,0,0,1.78886166630035,0.860234595106124,2.77712401286075,5.08777147731609,4.19499436209906,4.95212475492121,2.50793959844173,3.87625138753993,4.62496141492723,2.67776490211736,3.22263453687318,3.04108842287405,5.6134273236079,1.83831540172934,1.62028389576352,4.19708722935175,4.71511682514957,4.72968218029953,3.06633274931766,2.84779697870439,4.76324534219059,0,0,17.4437620857014,26.3395134398519,11.2701155381476,12.5788721772558,18.0707071071753,9.57604631935564,11.2135520028461,8.5399196583764,6.41335625884616,16.4941848761876,15.6264379600838,11.2788713148287,12.4113090668844,22.47086105472,9.13853584151807,14.9836836878554,8.55707732316674,16.1404574995945,21.3730787531652,24.7665604883241,20.2249161651238,20.6195712967442,20.2676623564417,24.5915359198322,23.7600571456411,25.9630275742485,1.82032272387605,12.2165084108761,22.0520309279827,21.2701483782339,15.5155904671142,21.9488810440419,21.4541457059314,32.9021349005447,9.52830338544177,33.3664722381283,16.4439189390297,17.5903477962436,25.5077431671742,22.9807140201719,25.5064134645173,13.5865305122061,20.5907125334345,18.4155939754665,33.826125748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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=10413 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16262 | |||
|TSSclassifier=S | |||
|UniProt=E9PRV2,E3WEB6,P46937,Q86T74 | |||
|association_with_transcript=-27bp_to_ENST00000282441,ENST00000526343,NM_001130145,NM_001195044,NM_006106_5end | |||
|coexpression_cluster_id=C3068 | |||
|description=CAGE_peak_2_at_YAP1_5end | |||
|id=chr11:101981127..101981164,+ | |||
|ontology_enrichment_celltype=CL:0000057!3.77e-09!75;CL:0000066!1.74e-08!254;CL:0000055!3.92e-08!180;CL:0000223!7.59e-08!59 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.74e-09,76;CL:0000066,3.46e-08,253;CL:0000223,8.77e-08,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!5.73e-23!169;UBERON:0000925!5.73e-23!169;UBERON:0006595!5.73e-23!169;UBERON:0000481!2.69e-21!347;UBERON:0001007!1.46e-20!155;UBERON:0001555!1.46e-20!155;UBERON:0007026!1.46e-20!155;UBERON:0003104!3.49e-17!238;UBERON:0009142!3.49e-17!238;UBERON:0000475!3.19e-16!365;UBERON:0000468!9.48e-16!659;UBERON:0003102!8.16e-15!95;UBERON:0000077!1.98e-14!130;UBERON:0004921!6.22e-14!129;UBERON:0004185!6.22e-14!129;UBERON:0002100!1.67e-13!216;UBERON:0000062!1.97e-13!511;UBERON:0001048!3.10e-12!168;UBERON:0000467!9.75e-12!625;UBERON:0000480!1.52e-11!626;UBERON:0005256!1.67e-10!143;UBERON:0000922!3.32e-09!612;UBERON:0000466!1.15e-08!126;UBERON:0000064!1.96e-08!219;UBERON:0002050!2.46e-08!605;UBERON:0005423!2.46e-08!605;UBERON:0000923!4.76e-08!604;UBERON:0005291!4.76e-08!604;UBERON:0006598!4.76e-08!604;UBERON:0002532!4.76e-08!604;UBERON:0000161!5.75e-08!35;UBERON:0001004!6.28e-08!72;UBERON:0000477!1.28e-07!286;UBERON:0005156!1.36e-07!59;UBERON:0000990!1.36e-07!59;UBERON:0001041!1.47e-07!98;UBERON:0001737!1.52e-07!9;UBERON:0005911!1.54e-07!82;UBERON:0003929!5.81e-07!54;UBERON:0000119!7.73e-07!312;UBERON:0000165!9.89e-07!28;UBERON:0000930!9.89e-07!28 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.44e-07;9!UBERON:0001557;1.44e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.20e-23,160;UBERON:0000925,1.20e-23,160;UBERON:0006595,1.20e-23,160;UBERON:0001007,7.27e-21,145;UBERON:0001555,7.27e-21,145;UBERON:0007026,7.27e-21,145;UBERON:0003102,1.95e-15,99;UBERON:0004921,5.83e-14,118;UBERON:0001048,2.94e-12,160;UBERON:0002100,6.20e-11,199;UBERON:0003104,1.78e-10,160;UBERON:0009142,1.78e-10,160;UBERON:0005256,1.05e-08,122;UBERON:0001004,1.76e-08,74;UBERON:0011216,2.10e-08,223;UBERON:0000161,3.77e-08,36;UBERON:0004923,5.02e-08,66;UBERON:0005156,1.19e-07,59;UBERON:0000990,1.19e-07,59;UBERON:0005911,1.25e-07,82;UBERON:0001737,1.43e-07,9;UBERON:0000922,1.82e-07,592;UBERON:0001041,1.82e-07,87;UBERON:0003929,5.14e-07,54;UBERON:0000165,6.60e-07,29;UBERON:0000930,6.60e-07,29 | |||
|phase1_expression=16.3510541343501,18.8408461024065,16.0688020669407,11.0080628188443,22.7950158157917,25.2978171989107,2.53299878168311,10.7392378482561,10.9697963843932,7.12628415854376,8.37361401566913,11.5773927228991,11.3419800638235,15.965859531846,16.5698687863958,9.41255205032485,13.2592796165275,16.0668219885222,13.1741855673437,9.48032147191267,16.5240559907845,11.9112794161673,9.15955158819382,14.23494020758,13.6841477158335,0,0,0,0,0,0.928896739896456,16.5495820406207,14.7590900201343,12.201882335504,0,0,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,1.35426486594342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.23779651843358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0.267440195783507,0.434473211648397,19.5045493051169,18.7796240717018,9.58969213826478,15.5418835525363,13.0347856765331,17.3815822752988,6.36228757640879,14.1124112387764,12.3840610484929,15.0775990274543,13.5265569967414,16.6998321259584,6.9216104775583,16.6852999252993,0,0,0,0,0,0,1.78886166630035,0.860234595106124,2.77712401286075,5.08777147731609,4.19499436209906,4.95212475492121,2.50793959844173,3.87625138753993,4.62496141492723,2.67776490211736,3.22263453687318,3.04108842287405,5.6134273236079,1.83831540172934,1.62028389576352,4.19708722935175,4.71511682514957,4.72968218029953,3.06633274931766,2.84779697870439,4.76324534219059,0,0,17.4437620857014,26.3395134398519,11.2701155381476,12.5788721772558,18.0707071071753,9.57604631935564,11.2135520028461,8.5399196583764,6.41335625884616,16.4941848761876,15.6264379600838,11.2788713148287,12.4113090668844,22.47086105472,9.13853584151807,14.9836836878554,8.55707732316674,16.1404574995945,21.3730787531652,24.7665604883241,20.2249161651238,20.6195712967442,20.2676623564417,24.5915359198322,23.7600571456411,25.9630275742485,1.82032272387605,12.2165084108761,22.0520309279827,21.2701483782339,15.5155904671142,21.9488810440419,21.4541457059314,32.9021349005447,9.52830338544177,33.3664722381283,16.4439189390297,17.5903477962436,25.5077431671742,22.9807140201719,25.5064134645173,13.5865305122061,20.5907125334345,18.4155939754665,33.8261257487113,19.4225286135252,21.6605716137208,33.0158921040451,17.1278566986988,10.0040749463188,17.2002159315334,15.5465288736776,18.6422987002852,12.0753969068299,15.6385126619353,17.3128974875582,15.7564803623363,15.643892754289,13.1391849267299,14.0804579096834,14.7945415784364,12.4321429217232,20.4321888334071,15.8813485967309,49.4522424166547,62.3763353288976,49.8892831858808,54.1543406116054,51.6374282499003,54.5722423955522,55.0111737293471,52.3911311884674,45.4001645196741,5.16708818237254,9.81692416624121,12.7587943512734,10.2906097969879,21.5483559197112,28.5019892836512,24.2223861739376,0,34.3137743535287,13.725424823882,25.791317071027,11.240175325762,16.0846355858609,34.0725478183389,12.3807156017923,11.4392826380754,11.5465073620219,14.7231614318348,14.9109041679494,5.63029146268188,5.09284063834272,8.37118269832232,10.2726571734706,6.86788929675898,0,0,0,13.1227367581488,17.4701413326814,18.1472124470255,23.016540334632,17.4380363108377,19.5525166374258,0,0.088048434013226,0.414656231081544,0.288239906833923,0.75745460055828,8.95320309519583,14.1335717456563,9.37739577680376,10.2643467613623,11.1053692119589,13.8157806608202,15.4346273620512,15.1376963866237,13.5147621338317,17.9678800261328,9.56610696607556,0,17.751357803676,15.1584726453376,15.6011155367049,6.94459910507784,7.09245660116391,11.7225758767084,15.8705572960544,10.3098105024374,9.05564370458846,12.7037111874557,13.5048940522167,15.0470855857352,15.3734082300389,4.35766729300147,19.8946252452294,0,0,0,10.3038687861381,8.04033550838797,35.6592262601796,9.70034754672781,18.0819163844337,11.997084537073,0,0,0,0,8.89331184778622,3.90419561572865,1.54657762555539,3.51784157202132,1.27587750330633,0,0,0,19.0171812164667,19.0064798002677,16.8184314693836,32.2354835372751,26.4074903419799,24.7592791603277,49.1993942969395,5.41702979509894,4.5481500811197,9.31257641632544,18.5983167589922,12.5371034608358,23.7192267497866,9.20265440074881,9.95115929051482,0.206768026122887,0,0.106727557803444,11.8219752864041,18.3078983461547,13.9099534931653,8.43566546583841,19.3362086342959,17.4009258548506,20.1178464331451,16.8863392192012,17.211369562366,8.90508398669946,18.0425341749107,12.4293207719189,21.517314875618,22.8471948840793,19.4071332028132,28.2811112044396,24.4617893770008,27.0718107471535,11.7110737127899,17.1165697926314,17.4395471896034,9.02399225814824,15.403067420883,7.0591479225917,10.2297457257282,16.7827089939672,2.27466768141793,0.680374821106063,10.795795805107,4.62681758070868,7.85744668877173,6.02027728625824,8.41091701048626,9.97291210714469,13.8802347927751,0,0,12.5660561307031,5.576248976895,6.18218949862176,18.3413000732946,3.66277859273374,3.71292749642646,14.3566384499043,16.9015663969496,27.3162680735071,12.1805105048074,13.4022296889741,13.6618270506255,14.7485132558448,14.9314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| |||
|short_description=p2@YAP1 | |||
}} |
Revision as of 15:19, 10 September 2013
Short description: | p2@YAP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_YAP1_5end |
Coexpression cluster: | C3068_epidermoid_pharyngeal_aorta_amniotic_chorionic_Hep2_mature |
Association with transcript: | -27bp_to_ENST00000282441, ENST00000526343, NM_001130145, NM_001195044, NM_006106_5end |
EntrezGene: | YAP1 |
HGNC: | 16262 |
UniProt: | E9PRV2E3WEB6P46937Q86T74 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.74e-09 | 76 |
epithelial cell | 3.46e-08 | 253 |
endodermal cell | 8.77e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.20e-23 | 160 |
endoderm | 1.20e-23 | 160 |
presumptive endoderm | 1.20e-23 | 160 |
digestive system | 7.27e-21 | 145 |
digestive tract | 7.27e-21 | 145 |
primitive gut | 7.27e-21 | 145 |
surface structure | 1.95e-15 | 99 |
subdivision of digestive tract | 5.83e-14 | 118 |
primordium | 2.94e-12 | 160 |
trunk | 6.20e-11 | 199 |
mesenchyme | 1.78e-10 | 160 |
entire embryonic mesenchyme | 1.78e-10 | 160 |
trunk mesenchyme | 1.05e-08 | 122 |
respiratory system | 1.76e-08 | 74 |
organ system subdivision | 2.10e-08 | 223 |
orifice | 3.77e-08 | 36 |
organ component layer | 5.02e-08 | 66 |
reproductive structure | 1.19e-07 | 59 |
reproductive system | 1.19e-07 | 59 |
endo-epithelium | 1.25e-07 | 82 |
larynx | 1.43e-07 | 9 |
embryo | 1.82e-07 | 592 |
foregut | 1.82e-07 | 87 |
gut epithelium | 5.14e-07 | 54 |
mouth | 6.60e-07 | 29 |
stomodeum | 6.60e-07 | 29 |
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