FFCP PHASE1:Hg19::chr10:82049403..82049420,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4143|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6903|TSSclassifier=S|UniProt=Q00266|association_with_transcript=13bp_to_NM_000429,uc001kbw.2_5end|coexpression_cluster_id=C5|description=CAGE_peak_1_at_MAT1A_5end|id=chr10:82049403..82049420,-|ontology_enrichment_celltype=CL:0002322!7.81e-12!5;CL:0000181!3.66e-10!12;CL:0000417!3.66e-10!12;CL:0000668!3.66e-10!12;CL:0000414!3.66e-10!12;CL:0000412!3.66e-10!12;CL:0000182!3.66e-10!12|ontology_enrichment_celltype_v019=CL:0000182;1.96e-27;12|ontology_enrichment_celltype_v019_2=CL:0000182,1.96e-27,12;CL:0000223,4.46e-12,58|ontology_enrichment_development_v019=UBERON:0004161;4.33e-22;11!UBERON:0009497;1.29e-18;13!CL:0000223;5.88e-09;58!UBERON:0000358;5.40e-08;1!UBERON:0001041;9.29e-08;30!UBERON:0003104;1.54e-07;31|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:1287;1.82e-15;4!DOID:114;3.65e-14;2!DOID:7;1.00e-10;39!DOID:178;4.40e-08;1!DOID:326;4.40e-08;1!DOID:3978;4.40e-08;1!DOID:3394;4.40e-08;1!DOID:5844;4.40e-08;1!DOID:2355;5.40e-08;1|ontology_enrichment_disease_v019_2=DOID:1287,1.60e-15,4;DOID:114,2.70e-14,2;DOID:7,2.35e-12,39;DOID:178,4.40e-08,1;DOID:326,4.40e-08,1;DOID:3978,4.40e-08,1;DOID:3394,4.40e-08,1;DOID:5844,4.40e-08,1;DOID:2355,6.19e-08,1|ontology_enrichment_uberon=UBERON:0007023!2.01e-12!115;UBERON:0002107!6.83e-10!19;UBERON:0006925!6.83e-10!19;UBERON:0008836!6.83e-10!19;UBERON:0002368!2.02e-09!35;UBERON:0007499!1.20e-08!25;UBERON:0009497!1.45e-08!25;UBERON:0000015!1.45e-08!25;UBERON:0002423!1.45e-08!25;UBERON:0006235!1.45e-08!25;UBERON:0004161!1.45e-08!25;UBERON:0005057!2.84e-08!26;UBERON:0008835!2.89e-08!22;UBERON:0003894!2.89e-08!22;UBERON:0009856!3.16e-08!26;UBERON:0000949!7.39e-08!45;UBERON:0009854!8.07e-08!23;UBERON:0005911!7.97e-07!82|ontology_enrichment_uberon_v019=UBERON:0002107;3.68e-28;19!UBERON:0006925;3.68e-28;19!UBERON:0002423;4.66e-21;25!UBERON:0002368;2.13e-17;33!UBERON:0002365;3.22e-16;31!UBERON:0002330;3.22e-16;31!UBERON:0000949;2.02e-14;43!UBERON:0006947;7.02e-10;3!UBERON:0004054;7.02e-10;3!UBERON:0001301;2.71e-08;1!UBERON:0005172;4.13e-08;52!UBERON:0005173;4.13e-08;52!UBERON:0002417;4.23e-08;58!UBERON:0000916;4.23e-08;58!UBERON:0001000;8.98e-08;1!UBERON:0005352;8.98e-08;1!UBERON:0002530;9.46e-08;57!UBERON:0005904;1.28e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.69e-28,19;UBERON:0006925,3.69e-28,19;UBERON:0008836,3.69e-28,19;UBERON:0008835,3.99e-24,22;UBERON:0003894,3.99e-24,22;UBERON:0009854,5.15e-23,23;UBERON:0007499,4.66e-21,25;UBERON:0009497,4.66e-21,25;UBERON:0000015,4.66e-21,25;UBERON:0002423,4.66e-21,25;UBERON:0006235,4.66e-21,25;UBERON:0004161,4.66e-21,25;UBERON:0009856,3.42e-20,26;UBERON:0002368,6.37e-18,35;UBERON:0002365,1.06e-16,31;UBERON:0002330,1.06e-16,31;UBERON:0000949,1.83e-16,45;UBERON:0005172,5.71e-16,54;UBERON:0005173,5.71e-16,54;UBERON:0002417,3.80e-14,60;UBERON:0000916,3.80e-14,60;UBERON:0003929,2.25e-13,54;UBERON:0002530,5.08e-12,59;UBERON:0006947,6.00e-10,3;UBERON:0004054,6.00e-10,3;UBERON:0005177,6.31e-09,101;UBERON:0001301,2.71e-08,1;UBERON:0005911,3.94e-08,82;UBERON:0001000,7.10e-08,1;UBERON:0005352,7.10e-08,1;UBERON:0009569,9.32e-08,112;UBERON:0005904,1.14e-07,4;UBERON:0001041,1.59e-07,87;UBERON:0004921,3.74e-07,118|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.68676929949686,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982343066232845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0.662648841607426,0.464775771478074,0.207322110030741,0.756962552626885,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,670.534134207485,169.046281268552,739.668963165118,0,2.21379189377604,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,274.913419076123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,260.307609147794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.50565556505718,0,0,0,0,1.12284324244932,0.146508179271894,1.09224469574562,0,0.568272293612826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.72399471485697,0,0,1.04171104434093,0,0,0.1137934482855,0,0,0,0,0.173624994933292,0,0.120596438625408,0,0,0,0.219385397153973,0,0,0,0,0,0.179515288819544,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0.848118428603645,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,1.57833761139756,0,0,0,0,0,0,0,0,0,1.138438184119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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4143 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6903 | |||
|TSSclassifier=S | |||
|UniProt=Q00266 | |||
|association_with_transcript=13bp_to_NM_000429,uc001kbw.2_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_1_at_MAT1A_5end | |||
|id=chr10:82049403..82049420,- | |||
|ontology_enrichment_celltype=CL:0002322!7.81e-12!5;CL:0000181!3.66e-10!12;CL:0000417!3.66e-10!12;CL:0000668!3.66e-10!12;CL:0000414!3.66e-10!12;CL:0000412!3.66e-10!12;CL:0000182!3.66e-10!12 | |||
|ontology_enrichment_celltype_v019=CL:0000182;1.96e-27;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.96e-27,12;CL:0000223,4.46e-12,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;4.33e-22;11!UBERON:0009497;1.29e-18;13!CL:0000223;5.88e-09;58!UBERON:0000358;5.40e-08;1!UBERON:0001041;9.29e-08;30!UBERON:0003104;1.54e-07;31 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1287;1.82e-15;4!DOID:114;3.65e-14;2!DOID:7;1.00e-10;39!DOID:178;4.40e-08;1!DOID:326;4.40e-08;1!DOID:3978;4.40e-08;1!DOID:3394;4.40e-08;1!DOID:5844;4.40e-08;1!DOID:2355;5.40e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1287,1.60e-15,4;DOID:114,2.70e-14,2;DOID:7,2.35e-12,39;DOID:178,4.40e-08,1;DOID:326,4.40e-08,1;DOID:3978,4.40e-08,1;DOID:3394,4.40e-08,1;DOID:5844,4.40e-08,1;DOID:2355,6.19e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.01e-12!115;UBERON:0002107!6.83e-10!19;UBERON:0006925!6.83e-10!19;UBERON:0008836!6.83e-10!19;UBERON:0002368!2.02e-09!35;UBERON:0007499!1.20e-08!25;UBERON:0009497!1.45e-08!25;UBERON:0000015!1.45e-08!25;UBERON:0002423!1.45e-08!25;UBERON:0006235!1.45e-08!25;UBERON:0004161!1.45e-08!25;UBERON:0005057!2.84e-08!26;UBERON:0008835!2.89e-08!22;UBERON:0003894!2.89e-08!22;UBERON:0009856!3.16e-08!26;UBERON:0000949!7.39e-08!45;UBERON:0009854!8.07e-08!23;UBERON:0005911!7.97e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.68e-28;19!UBERON:0006925;3.68e-28;19!UBERON:0002423;4.66e-21;25!UBERON:0002368;2.13e-17;33!UBERON:0002365;3.22e-16;31!UBERON:0002330;3.22e-16;31!UBERON:0000949;2.02e-14;43!UBERON:0006947;7.02e-10;3!UBERON:0004054;7.02e-10;3!UBERON:0001301;2.71e-08;1!UBERON:0005172;4.13e-08;52!UBERON:0005173;4.13e-08;52!UBERON:0002417;4.23e-08;58!UBERON:0000916;4.23e-08;58!UBERON:0001000;8.98e-08;1!UBERON:0005352;8.98e-08;1!UBERON:0002530;9.46e-08;57!UBERON:0005904;1.28e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.69e-28,19;UBERON:0006925,3.69e-28,19;UBERON:0008836,3.69e-28,19;UBERON:0008835,3.99e-24,22;UBERON:0003894,3.99e-24,22;UBERON:0009854,5.15e-23,23;UBERON:0007499,4.66e-21,25;UBERON:0009497,4.66e-21,25;UBERON:0000015,4.66e-21,25;UBERON:0002423,4.66e-21,25;UBERON:0006235,4.66e-21,25;UBERON:0004161,4.66e-21,25;UBERON:0009856,3.42e-20,26;UBERON:0002368,6.37e-18,35;UBERON:0002365,1.06e-16,31;UBERON:0002330,1.06e-16,31;UBERON:0000949,1.83e-16,45;UBERON:0005172,5.71e-16,54;UBERON:0005173,5.71e-16,54;UBERON:0002417,3.80e-14,60;UBERON:0000916,3.80e-14,60;UBERON:0003929,2.25e-13,54;UBERON:0002530,5.08e-12,59;UBERON:0006947,6.00e-10,3;UBERON:0004054,6.00e-10,3;UBERON:0005177,6.31e-09,101;UBERON:0001301,2.71e-08,1;UBERON:0005911,3.94e-08,82;UBERON:0001000,7.10e-08,1;UBERON:0005352,7.10e-08,1;UBERON:0009569,9.32e-08,112;UBERON:0005904,1.14e-07,4;UBERON:0001041,1.59e-07,87;UBERON:0004921,3.74e-07,118 | |||
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|short_description=p1@MAT1A | |||
}} |
Revision as of 14:39, 10 September 2013
Short description: | p1@MAT1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_MAT1A_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 13bp_to_NM_000429, uc001kbw.2_5end |
EntrezGene: | MAT1A |
HGNC: | 6903 |
UniProt: | Q00266 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.96e-27 | 12 |
endodermal cell | 4.46e-12 | 58 |
Ontology term | p-value | n |
---|---|---|
liver | 3.69e-28 | 19 |
digestive gland | 3.69e-28 | 19 |
liver bud | 3.69e-28 | 19 |
hepatic diverticulum | 3.99e-24 | 22 |
liver primordium | 3.99e-24 | 22 |
digestive tract diverticulum | 5.15e-23 | 23 |
epithelial sac | 4.66e-21 | 25 |
epithelium of foregut-midgut junction | 4.66e-21 | 25 |
anatomical boundary | 4.66e-21 | 25 |
hepatobiliary system | 4.66e-21 | 25 |
foregut-midgut junction | 4.66e-21 | 25 |
septum transversum | 4.66e-21 | 25 |
sac | 3.42e-20 | 26 |
endocrine gland | 6.37e-18 | 35 |
exocrine gland | 1.06e-16 | 31 |
exocrine system | 1.06e-16 | 31 |
endocrine system | 1.83e-16 | 45 |
abdomen element | 5.71e-16 | 54 |
abdominal segment element | 5.71e-16 | 54 |
abdominal segment of trunk | 3.80e-14 | 60 |
abdomen | 3.80e-14 | 60 |
gut epithelium | 2.25e-13 | 54 |
gland | 5.08e-12 | 59 |
male genital duct | 6.00e-10 | 3 |
internal male genitalia | 6.00e-10 | 3 |
trunk region element | 6.31e-09 | 101 |
epididymis | 2.71e-08 | 1 |
endo-epithelium | 3.94e-08 | 82 |
vas deferens | 7.10e-08 | 1 |
spermatic cord | 7.10e-08 | 1 |
subdivision of trunk | 9.32e-08 | 112 |
duct of male reproductive system | 1.14e-07 | 4 |
foregut | 1.59e-07 | 87 |
subdivision of digestive tract | 3.74e-07 | 118 |
Ontology term | p-value | n |
---|---|---|
cardiovascular system disease | 1.60e-15 | 4 |
heart disease | 2.70e-14 | 2 |
disease of anatomical entity | 2.35e-12 | 39 |
vascular disease | 4.40e-08 | 1 |
ischemia | 4.40e-08 | 1 |
extrinsic cardiomyopathy | 4.40e-08 | 1 |
myocardial ischemia | 4.40e-08 | 1 |
myocardial infarction | 4.40e-08 | 1 |
anemia | 6.19e-08 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.