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MCL coexpression mm9:387: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002530!1.17e-10!65;UBERON:0002368!1.62e-10!60;UBERON:0009569!1.81e-10!66;UBERON:0002365!4.01e-08!25;UBERON:0002330!4.01e-08!25;UBERON:0005172!1.04e-07!49;UBERON:0005173!1.04e-07!49;UBERON:0002417!1.04e-07!49;UBERON:0000916!1.04e-07!49;UBERON:0001041!1.91e-07!80;UBERON:0002107!2.53e-07!22;UBERON:0007499!2.53e-07!22;UBERON:0006925!2.53e-07!22;UBERON:0009497!2.53e-07!22;UBERON:0000015!2.53e-07!22;UBERON:0002423!2.53e-07!22;UBERON:0006235!2.53e-07!22;UBERON:0008835!2.53e-07!22;UBERON:0003894!2.53e-07!22;UBERON:0004161!2.53e-07!22;UBERON:0008836!2.53e-07!22;UBERON:0002369!4.02e-07!7;UBERON:0006858!4.02e-07!7;UBERON:0000949!5.24e-07!72;UBERON:0005911!5.57e-07!69;UBERON:0005177!6.48e-07!79;UBERON:0009854!8.42e-07!23;UBERON:0009856!8.42e-07!23
|ontology_enrichment_uberon=UBERON:0002530!1.17e-10!65;UBERON:0002368!1.62e-10!60;UBERON:0009569!1.81e-10!66;UBERON:0002365!4.01e-08!25;UBERON:0002330!4.01e-08!25;UBERON:0005172!1.04e-07!49;UBERON:0005173!1.04e-07!49;UBERON:0002417!1.04e-07!49;UBERON:0000916!1.04e-07!49;UBERON:0001041!1.91e-07!80;UBERON:0002107!2.53e-07!22;UBERON:0007499!2.53e-07!22;UBERON:0006925!2.53e-07!22;UBERON:0009497!2.53e-07!22;UBERON:0000015!2.53e-07!22;UBERON:0002423!2.53e-07!22;UBERON:0006235!2.53e-07!22;UBERON:0008835!2.53e-07!22;UBERON:0003894!2.53e-07!22;UBERON:0004161!2.53e-07!22;UBERON:0008836!2.53e-07!22;UBERON:0002369!4.02e-07!7;UBERON:0006858!4.02e-07!7;UBERON:0000949!5.24e-07!72;UBERON:0005911!5.57e-07!69;UBERON:0005177!6.48e-07!79;UBERON:0009854!8.42e-07!23;UBERON:0009856!8.42e-07!23
|tfbs_overrepresentation_for_novel_motifs=0.138811,0.0416895,0.122882,0.96166,0.493134,0.521151,0.675449,0.517797,0.0306972,0.00895429,0.208344,1.22048,0.0278964,0.249744,0.249925,0,0.405853,0.474154,0.0236414,0.100955,0.101766,0.0564774,0.249061,0.843635,0.127411,0.270807,0.0214696,0.190063,0.0855806,0.158048,0.18034,1.23631,0.0591615,0.197789,0.0716204,0.0141754,0.0551797,0.228897,0.701925,0.142999,0.483482,0.183887,0.111877,0.0723454,0.165871,0.158598,0.339166,0.201138,0.162034,0.293801,0.39102,0.793253,0.0541297,0.621761,0.63782,0.255168,0.30656,0.222181,0.216792,0.705824,0.476165,0.299289,0.323654,0.381514,0.26368,0.41591,0.765078,1.10104,0.472057,0.958179,0.111851,1.67175,0.00332225,1.60518,0.0177244,0.0711042,0.945168,0.329879,0.461106,0.693097,0.123342,0.420719,0.807577,0.796919,0.563042,0.000337993,1.08023,0.012217,0.343187,1.25993,0.831175,0.56755,0.505205,1.31336,0.0448178,0.0383905,0.815011,0.507703,0.339375,0.0446351,0.202817,0.493598,0.605777,0.391523,0.390631,0.183584,0.44182,0.575829,0.106835,0.102757,0.418563,0.607409,0.34141,0.212058,0.837889,0.061076,0.000774063,0.168461,0.406964,1.1708,0.673855,0.363969,0.748598,0.329142,0.889642,0.464341,0.689677,0.499188,0.763646,0.881568,1.44068,0.941762,0.735806,0.733457,0.858504,0.127797,0.442998,0.184858,0.811653,1.62404,1.22863,0.769526,0.769996,0.50313,1.00119,0.184199,0.341725,1.58469,0.145585,0.0644667,0.0126545,0.00215267,0.623204,0.0405022,0.264901,0.698893,0.795055,0.266327,1.35996,0.143914,0.820693,0.562267,0.464731,0.133047,0.382373,0.259222,0.0547089,0.230394,0.000655516
}}
}}

Revision as of 18:16, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr19:29686095..29686114,-p@chr19:29686095..29686114
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Mm9::chr2:75710016..75710020,+p@chr2:75710016..75710020
+
Mm9::chr2:75765481..75765501,+p@chr2:75765481..75765501
+
Mm9::chr8:126274990..126274993,-p@chr8:126274990..126274993
-
Mm9::chr9:77765055..77765064,+p8@Elovl5
Mm9::chr9:77783183..77783189,+p@chr9:77783183..77783189
+
Mm9::chr9:77804942..77804984,+p@chr9:77804942..77804984
+
Mm9::chr9:77808678..77808707,+p@chr9:77808678..77808707
+
Mm9::chr9:77810108..77810114,+p@chr9:77810108..77810114
+
Mm9::chr9:77824569..77824580,+p@chr9:77824569..77824580
+
Mm9::chr9:77824689..77824700,+p@chr9:77824689..77824700
+
Mm9::chr9:77824718..77824720,-p@chr9:77824718..77824720
-
Mm9::chr9:77829313..77829331,+p@chr9:77829313..77829331
+
Mm9::chr9:77830487..77830494,+p@chr9:77830487..77830494
+
Mm9::chr9:77830495..77830505,+p@chr9:77830495..77830505
+
Mm9::chr9:77830528..77830537,+p@chr9:77830528..77830537
+
Mm9::chr9:77830961..77830972,+p@chr9:77830961..77830972
+
Mm9::chr9:77831324..77831354,+p@chr9:77831324..77831354
+
Mm9::chr9:77831378..77831389,+p@chr9:77831378..77831389
+
Mm9::chr9:77831589..77831607,+p@chr9:77831589..77831607
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
gland1.17e-1065
endocrine gland1.62e-1060
subdivision of trunk1.81e-1066
exocrine gland4.01e-0825
exocrine system4.01e-0825
abdomen element1.04e-0749
abdominal segment element1.04e-0749
abdominal segment of trunk1.04e-0749
abdomen1.04e-0749
foregut1.91e-0780
liver2.53e-0722
epithelial sac2.53e-0722
digestive gland2.53e-0722
epithelium of foregut-midgut junction2.53e-0722
anatomical boundary2.53e-0722
hepatobiliary system2.53e-0722
foregut-midgut junction2.53e-0722
hepatic diverticulum2.53e-0722
liver primordium2.53e-0722
septum transversum2.53e-0722
liver bud2.53e-0722
adrenal gland4.02e-077
adrenal/interrenal gland4.02e-077
endocrine system5.24e-0772
endo-epithelium5.57e-0769
trunk region element6.48e-0779
digestive tract diverticulum8.42e-0723
sac8.42e-0723


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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