FFCP PHASE1:Hg19::chr4:57774884..57774924,+: Difference between revisions
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|ontology_enrichment_celltype=CL:0000144!5.91e-19!625;CL:0000012!9.48e-19!682;CL:0000548!2.16e-17!679;CL:0000004!2.16e-17!679;CL:0000255!2.16e-17!679;CL:0000763!3.42e-16!112;CL:0000049!3.42e-16!112;CL:0002371!1.74e-14!591;CL:0002057!3.49e-13!42;CL:0002194!4.77e-13!63;CL:0000576!4.77e-13!63;CL:0000040!4.77e-13!63;CL:0000559!4.77e-13!63;CL:0000860!7.55e-13!45;CL:0000063!9.22e-13!578;CL:0002009!1.15e-12!65;CL:0000557!1.80e-12!71;CL:0000003!7.59e-12!722;CL:0000839!1.29e-11!70;CL:0000766!2.84e-11!76;CL:0000034!1.07e-10!444;CL:0000048!7.08e-10!430;CL:0000723!3.06e-09!436;CL:0002032!2.19e-08!165;CL:0000837!2.19e-08!165;CL:0002139!3.95e-08!24;CL:0000037!9.97e-08!172;CL:0000566!9.97e-08!172;CL:0000134!1.27e-07!358;CL:0000071!1.27e-07!18;CL:0002546!1.27e-07!18;CL:0000115!1.33e-07!35;CL:0000988!3.45e-07!182;CL:0002320!4.22e-07!365 | |ontology_enrichment_celltype=CL:0000144!5.91e-19!625;CL:0000012!9.48e-19!682;CL:0000548!2.16e-17!679;CL:0000004!2.16e-17!679;CL:0000255!2.16e-17!679;CL:0000763!3.42e-16!112;CL:0000049!3.42e-16!112;CL:0002371!1.74e-14!591;CL:0002057!3.49e-13!42;CL:0002194!4.77e-13!63;CL:0000576!4.77e-13!63;CL:0000040!4.77e-13!63;CL:0000559!4.77e-13!63;CL:0000860!7.55e-13!45;CL:0000063!9.22e-13!578;CL:0002009!1.15e-12!65;CL:0000557!1.80e-12!71;CL:0000003!7.59e-12!722;CL:0000839!1.29e-11!70;CL:0000766!2.84e-11!76;CL:0000034!1.07e-10!444;CL:0000048!7.08e-10!430;CL:0000723!3.06e-09!436;CL:0002032!2.19e-08!165;CL:0000837!2.19e-08!165;CL:0002139!3.95e-08!24;CL:0000037!9.97e-08!172;CL:0000566!9.97e-08!172;CL:0000134!1.27e-07!358;CL:0000071!1.27e-07!18;CL:0002546!1.27e-07!18;CL:0000115!1.33e-07!35;CL:0000988!3.45e-07!182;CL:0002320!4.22e-07!365 | ||
|ontology_enrichment_celltype_v019=CL:0000860;6.39e-21;33!CL:0002057;6.39e-21;33!CL:0000473;5.18e-14;39!CL:0000234;5.18e-14;39!CL:0000576;1.67e-11;48!CL:0002139;5.24e-11;24!CL:0000071;6.85e-10;18!CL:0000115;3.64e-09;36!CL:0000763;4.37e-07;100 | |ontology_enrichment_celltype_v019=CL:0000860;6.39e-21;33!CL:0002057;6.39e-21;33!CL:0000473;5.18e-14;39!CL:0000234;5.18e-14;39!CL:0000576;1.67e-11;48!CL:0002139;5.24e-11;24!CL:0000071;6.85e-10;18!CL:0000115;3.64e-09;36!CL:0000763;4.37e-07;100 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.64e-19,42;CL:0002057,5.64e-19,42;CL:0000763,1.08e-16,108;CL:0000049,1.08e-16,108;CL:0002194,2.45e-16,59;CL:0000576,2.45e-16,59;CL:0000040,2.45e-16,59;CL:0000559,2.45e-16,59;CL:0002009,2.56e-16,61;CL:0000473,4.21e-16,48;CL:0000234,4.21e-16,48;CL:0000557,7.55e-15,67;CL:0000839,3.13e-13,66;CL:0000766,1.33e-12,72;CL:0002139,9.37e-12,24;CL:0000115,3.89e-11,36;CL:0000071,7.16e-11,18;CL:0002546,7.16e-11,18;CL:0002032,4.34e-08,161;CL:0000837,4.34e-08,161;CL:0000034,7.92e-08,441;CL:0000037,1.34e-07,168;CL:0002078,2.21e-07,45;CL:1000413,3.28e-07,9;CL:0000988,4.19e-07,177 | |||
|ontology_enrichment_development_v019=CL:0002057;2.64e-14;42!CL:0002546;6.85e-10;18!CL:0000049;2.17e-07;108 | |ontology_enrichment_development_v019=CL:0002057;2.64e-14;42!CL:0002546;6.85e-10;18!CL:0000049;2.17e-07;108 | ||
|ontology_enrichment_disease=DOID:8692!5.79e-07!31 | |ontology_enrichment_disease=DOID:8692!5.79e-07!31 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!9.00e-10!80;UBERON:0004765!9.42e-10!101;UBERON:0001434!9.42e-10!101;UBERON:0001474!1.08e-09!86;UBERON:0002204!5.20e-09!167;UBERON:0003081!1.03e-08!216;UBERON:0001986!1.27e-07!18;UBERON:0004638!1.27e-07!18;UBERON:0004852!1.27e-07!18;UBERON:0000487!5.53e-07!22;UBERON:0002384!7.30e-07!375 | |ontology_enrichment_uberon=UBERON:0002371!9.00e-10!80;UBERON:0004765!9.42e-10!101;UBERON:0001434!9.42e-10!101;UBERON:0001474!1.08e-09!86;UBERON:0002204!5.20e-09!167;UBERON:0003081!1.03e-08!216;UBERON:0001986!1.27e-07!18;UBERON:0004638!1.27e-07!18;UBERON:0004852!1.27e-07!18;UBERON:0000487!5.53e-07!22;UBERON:0002384!7.30e-07!375 | ||
|ontology_enrichment_uberon_v019=UBERON:0004638;6.85e-10;18!UBERON:0001986;6.85e-10;18!UBERON:0004852;6.85e-10;18!UBERON:0000487;2.70e-08;22!UBERON:0006914;9.92e-07;25 | |ontology_enrichment_uberon_v019=UBERON:0004638;6.85e-10;18!UBERON:0001986;6.85e-10;18!UBERON:0004852;6.85e-10;18!UBERON:0000487;2.70e-08;22!UBERON:0006914;9.92e-07;25 | ||
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| ||
|short_description=p4@REST | |short_description=p4@REST | ||
}} | }} |
Revision as of 00:46, 20 November 2012
Short description: | p4@REST |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_REST_5end |
Coexpression cluster: | NA |
Association with transcript: | -154bp_to_ENST00000511065, NM_001193508_5end |
EntrezGene: | REST |
HGNC: | 9966 |
UniProt: | Q13127 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.64e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.64e-19 | 42 |
myeloid cell | 1.08e-16 | 108 |
common myeloid progenitor | 1.08e-16 | 108 |
monopoietic cell | 2.45e-16 | 59 |
monocyte | 2.45e-16 | 59 |
monoblast | 2.45e-16 | 59 |
promonocyte | 2.45e-16 | 59 |
macrophage dendritic cell progenitor | 2.56e-16 | 61 |
defensive cell | 4.21e-16 | 48 |
phagocyte | 4.21e-16 | 48 |
granulocyte monocyte progenitor cell | 7.55e-15 | 67 |
myeloid lineage restricted progenitor cell | 3.13e-13 | 66 |
myeloid leukocyte | 1.33e-12 | 72 |
endothelial cell of vascular tree | 9.37e-12 | 24 |
endothelial cell | 3.89e-11 | 36 |
blood vessel endothelial cell | 7.16e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 7.16e-11 | 18 |
hematopoietic oligopotent progenitor cell | 4.34e-08 | 161 |
hematopoietic multipotent progenitor cell | 4.34e-08 | 161 |
stem cell | 7.92e-08 | 441 |
hematopoietic stem cell | 1.34e-07 | 168 |
meso-epithelial cell | 2.21e-07 | 45 |
endothelial cell of artery | 3.28e-07 | 9 |
hematopoietic cell | 4.19e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 1.66e-13 | 203 |
bone marrow | 2.96e-13 | 76 |
bone element | 3.75e-12 | 82 |
immune system | 4.18e-11 | 93 |
blood vessel endothelium | 7.16e-11 | 18 |
endothelium | 7.16e-11 | 18 |
cardiovascular system endothelium | 7.16e-11 | 18 |
skeletal element | 1.73e-10 | 90 |
skeletal system | 2.26e-09 | 100 |
simple squamous epithelium | 3.63e-09 | 22 |
hemolymphoid system | 8.35e-09 | 108 |
mesoderm | 1.39e-08 | 315 |
mesoderm-derived structure | 1.39e-08 | 315 |
presumptive mesoderm | 1.39e-08 | 315 |
hematopoietic system | 1.49e-08 | 98 |
blood island | 1.49e-08 | 98 |
musculoskeletal system | 2.10e-08 | 167 |
vessel | 2.88e-08 | 68 |
vasculature | 2.91e-08 | 78 |
vascular system | 2.91e-08 | 78 |
epithelial tube open at both ends | 6.31e-08 | 59 |
blood vessel | 6.31e-08 | 59 |
blood vasculature | 6.31e-08 | 59 |
vascular cord | 6.31e-08 | 59 |
squamous epithelium | 1.86e-07 | 25 |
endothelial tube | 3.28e-07 | 9 |
arterial system endothelium | 3.28e-07 | 9 |
endothelium of artery | 3.28e-07 | 9 |
cardiovascular system | 8.61e-07 | 109 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.