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MCL coexpression mm9:874: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002193!2.59e-15!48;UBERON:0002405!2.59e-15!48;UBERON:0002390!1.43e-13!45;UBERON:0003061!1.43e-13!45;UBERON:0004119!2.22e-11!118;UBERON:0000925!2.22e-11!118;UBERON:0006595!2.22e-11!118;UBERON:0001007!5.81e-11!116;UBERON:0001555!5.81e-11!116;UBERON:0007026!5.81e-11!116;UBERON:0004921!4.00e-10!114;UBERON:0003081!1.88e-09!87;UBERON:0000077!7.24e-09!35;UBERON:0001041!3.95e-08!80;UBERON:0004177!9.94e-08!29;UBERON:0005057!9.94e-08!29;UBERON:0002371!5.35e-07!16;UBERON:0000926!7.10e-07!120;UBERON:0004120!7.10e-07!120;UBERON:0006603!7.10e-07!120
}}
}}

Revision as of 21:23, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:7588671..7588676,+p@chr10:7588671..7588676
+
Mm9::chr11:6289088..6289109,+p3@Zmiz2
Mm9::chr14:59916347..59916366,-p1@Phf11
Mm9::chr14:59960162..59960195,-p1@Gm4902
Mm9::chr1:173537452..173537494,-p1@Ly9
Mm9::chr6:127396837..127396890,+p3@Parp11
Mm9::chr6:3349451..3349464,-p1@Samd9l
Mm9::chr7:111393300..111393305,+p@chr7:111393300..111393305
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
hemolymphoid system2.59e-1548
immune system2.59e-1548
hematopoietic system1.43e-1345
blood island1.43e-1345
endoderm-derived structure2.22e-11118
endoderm2.22e-11118
presumptive endoderm2.22e-11118
digestive system5.81e-11116
digestive tract5.81e-11116
primitive gut5.81e-11116
subdivision of digestive tract4.00e-10114
lateral plate mesoderm1.88e-0987
mixed endoderm/mesoderm-derived structure7.24e-0935
foregut3.95e-0880
hemopoietic organ9.94e-0829
immune organ9.94e-0829
bone marrow5.35e-0716
mesoderm7.10e-07120
mesoderm-derived structure7.10e-07120
presumptive mesoderm7.10e-07120


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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