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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0.0911788108631387,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0354470656487682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121412956978703,0.122210632163694,0.0771606661507038,0.0820502169770604,0.193474596664669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0569048698027435,0.0706022940921515,0.131621820077862,0.156342628830972,0.208805794366884,0.0981298273336855,0.0433344515412641,0.0726728611156123,0.0747544186697619,0,0,0.026094352054724,0.0310288534679737,0.142831491307564,0.143964504122064,0.182104477852721,0.14980107127196,0.096946505969497,0.0308766538450896,0.0560725960174655,0.0833119053986238,0.0371154675793343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576887980375319,0.584553975957988,0,0,0,0,0,0.0818043715271035,0.0257025274002712,0.0647883387433615,0.123636261712987,0.235978324500429,0.0936712615872169,0,0,0,0.867943188863447,0.53589474832088,0.32984120379362,0.443633910598176,0.545381553670177,0.646656676171729,0.345600087021426,0.369012488216384,0.612389559034094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0762328323016085,0.0619082774837524,0,0,0,0,0,0.0735856375862305,0,0,0,0.033106842853765,0,0,0,0,0,0.0394351756113673,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0323320383475661,0.0240677349949528,0,0,0,0,0,0,0,0,0,0,0,0.293784409600642,0,0,0,0,0.36688061805648,0.166012069309488,0.057359448163414,0.219437082021516,0.112371000179637,0.116420155980149,0.0998284739419172,0.185987593418638,0.183087496210002,0.0596340098159245,0,0,0.12724725138213,0.446353308934178,0.158283673657563,0.0421696201982708,0.192810194980063,0.101888556905493,0.123557017950668,0.206537122113033,0,0,0,0,0,0,0,0,0,0.132980393264954,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.017244733229267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0822247952518535,0,0.0688732037536692,0,0,0,0.185622953388358,0.140093894539124,0,0.0803040102291242,0.145825435924841,0,0.0472542065752338,0,0.0366471485294105,0.0871588832444397,0.040679966067952,0,0,0.0890506606185425,0.0375226752578547,0.0194374924235553,0.0269518943326477,0.0236122972807905,0,0.0238095886952444,0.0708531680714075,0,0,0.0640168649599105,0,0,0,0.0374482025933476,0.0339498293155746,0.0364791508700876,0,0.0521766646345615,0,0,0,0,0,0.0383032227056179,0,0,0.0845301845292944,0,0,0
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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000117!1.90e-09!23;CL:0000337!1.90e-09!23;CL:0002319!9.85e-08!43;CL:0000221!2.10e-07!44;CL:0000133!2.10e-07!44
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002346!2.56e-34!64;UBERON:0003075!2.56e-34!64;UBERON:0007284!2.56e-34!64;UBERON:0003056!5.29e-29!49;UBERON:0010371!6.66e-28!73;UBERON:0001049!2.93e-26!52;UBERON:0005068!2.93e-26!52;UBERON:0006241!2.93e-26!52;UBERON:0007135!2.93e-26!52;UBERON:0000073!1.60e-25!54;UBERON:0004121!6.42e-25!95;UBERON:0000924!6.42e-25!95;UBERON:0006601!6.42e-25!95;UBERON:0000955!3.97e-23!47;UBERON:0006238!3.97e-23!47;UBERON:0001017!2.71e-22!73;UBERON:0002616!4.28e-22!46;UBERON:0001016!2.84e-21!75;UBERON:0002780!9.57e-20!39;UBERON:0001890!9.57e-20!39;UBERON:0006240!9.57e-20!39;UBERON:0003080!5.56e-19!40;UBERON:0010314!1.34e-18!92;UBERON:0002020!2.36e-14!34;UBERON:0000970!1.01e-11!9;UBERON:0000019!1.01e-11!9;UBERON:0000047!1.01e-11!9;UBERON:0010312!1.01e-11!9;UBERON:0004088!1.01e-11!9;UBERON:0002104!1.01e-11!9;UBERON:0001456!1.01e-11!9;UBERON:0003072!1.01e-11!9;UBERON:0004128!1.01e-11!9;UBERON:0003071!1.01e-11!9;UBERON:0003528!1.84e-11!29;UBERON:0002791!1.84e-11!29;UBERON:0001893!1.84e-11!29;UBERON:0001894!4.35e-10!10;UBERON:0006222!4.35e-10!10;UBERON:0001444!4.87e-09!11;UBERON:0000007!2.44e-08!8;UBERON:0003296!2.44e-08!8;UBERON:0010133!2.44e-08!8;UBERON:0000020!4.83e-08!12;UBERON:0001032!4.83e-08!12;UBERON:0004456!4.83e-08!12;UBERON:0003076!8.18e-08!12;UBERON:0003057!8.18e-08!12;UBERON:0001264!1.21e-07!12;UBERON:0000033!3.32e-07!13;UBERON:0005085!3.32e-07!13;UBERON:0002420!4.65e-07!8;UBERON:0007245!4.65e-07!8;UBERON:0010009!4.65e-07!8;UBERON:0010011!4.65e-07!8;UBERON:0000454!4.65e-07!8
}}
}}

Revision as of 18:16, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr2:105515793..105515808,+p3@Pax6
Mm9::chr2:105515826..105515837,+p7@Pax6
Mm9::chr2:105515843..105515852,+p21@Pax6
Mm9::chr2:105515863..105515873,+p8@Pax6


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)1.90e-0923
neuroblast (sensu Vertebrata)1.90e-0923
neural cell9.85e-0843
ectodermal cell2.10e-0744
neurectodermal cell2.10e-0744

Uber Anatomy
Ontology termp-valuen
neurectoderm2.56e-3464
neural plate2.56e-3464
presumptive neural plate2.56e-3464
pre-chordal neural plate5.29e-2949
ecto-epithelium6.66e-2873
neural tube2.93e-2652
neural rod2.93e-2652
future spinal cord2.93e-2652
neural keel2.93e-2652
regional part of nervous system1.60e-2554
ectoderm-derived structure6.42e-2595
ectoderm6.42e-2595
presumptive ectoderm6.42e-2595
brain3.97e-2347
future brain3.97e-2347
central nervous system2.71e-2273
regional part of brain4.28e-2246
nervous system2.84e-2175
regional part of forebrain9.57e-2039
forebrain9.57e-2039
future forebrain9.57e-2039
anterior neural tube5.56e-1940
structure with developmental contribution from neural crest1.34e-1892
gray matter2.36e-1434
eye1.01e-119
camera-type eye1.01e-119
simple eye1.01e-119
immature eye1.01e-119
ocular region1.01e-119
visual system1.01e-119
face1.01e-119
optic cup1.01e-119
optic vesicle1.01e-119
eye primordium1.01e-119
brain grey matter1.84e-1129
regional part of telencephalon1.84e-1129
telencephalon1.84e-1129
diencephalon4.35e-1010
future diencephalon4.35e-1010
subdivision of head4.87e-0911
pituitary gland2.44e-088
gland of diencephalon2.44e-088
neuroendocrine gland2.44e-088
sense organ4.83e-0812
sensory system4.83e-0812
entire sense organ system4.83e-0812
posterior neural tube8.18e-0812
chordal neural plate8.18e-0812
pancreas1.21e-0712
head3.32e-0713
ectodermal placode3.32e-0713
basal ganglion4.65e-078
nuclear complex of neuraxis4.65e-078
aggregate regional part of brain4.65e-078
collection of basal ganglia4.65e-078
cerebral subcortex4.65e-078


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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