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MCL coexpression mm9:1384: Difference between revisions

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|gostat_on_MCL_coexpression=GO:0008228;opsonization;0.0471103798691677;16423!
|gostat_on_MCL_coexpression=GO:0008228;opsonization;0.0471103798691677;16423!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004119!7.58e-14!118;UBERON:0000925!7.58e-14!118;UBERON:0006595!7.58e-14!118;UBERON:0001007!1.33e-13!116;UBERON:0001555!1.33e-13!116;UBERON:0007026!1.33e-13!116;UBERON:0004921!7.31e-13!114;UBERON:0000490!8.79e-11!66;UBERON:0001041!2.57e-10!80;UBERON:0005911!4.24e-10!69;UBERON:0002193!1.71e-09!48;UBERON:0002405!1.71e-09!48;UBERON:0003929!2.65e-09!55;UBERON:0002390!2.60e-08!45;UBERON:0003061!2.60e-08!45;UBERON:0005256!1.53e-07!45;UBERON:0000077!2.50e-07!35;UBERON:0002100!2.83e-07!90;UBERON:0004923!4.75e-07!24
}}
}}

Revision as of 16:48, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr16:49855737..49855835,+p1@Cd47
Mm9::chr2:120834152..120834217,+p1@Ccndbp1
Mm9::chr2:51790463..51790535,-p1@Rbm43
Mm9::chr5:65194720..65194738,+p2@Klf3
Mm9::chr6:56851864..56851885,-p2@Nt5c3
Mm9::chrX:7418926..7418992,+p2@Otud5


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0008228opsonization0.0471103798691677



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
endoderm-derived structure7.58e-14118
endoderm7.58e-14118
presumptive endoderm7.58e-14118
digestive system1.33e-13116
digestive tract1.33e-13116
primitive gut1.33e-13116
subdivision of digestive tract7.31e-13114
unilaminar epithelium8.79e-1166
foregut2.57e-1080
endo-epithelium4.24e-1069
hemolymphoid system1.71e-0948
immune system1.71e-0948
gut epithelium2.65e-0955
hematopoietic system2.60e-0845
blood island2.60e-0845
trunk mesenchyme1.53e-0745
mixed endoderm/mesoderm-derived structure2.50e-0735
trunk2.83e-0790
organ component layer4.75e-0724


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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