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MCL coexpression mm9:1281: Difference between revisions

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|gostat_on_MCL_coexpression=GO:0016404;15-hydroxyprostaglandin dehydrogenase (NAD+) activity;0.033145236399496;15446!
|gostat_on_MCL_coexpression=GO:0016404;15-hydroxyprostaglandin dehydrogenase (NAD+) activity;0.033145236399496;15446!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004119!2.67e-14!118;UBERON:0000925!2.67e-14!118;UBERON:0006595!2.67e-14!118;UBERON:0001007!9.01e-14!116;UBERON:0001555!9.01e-14!116;UBERON:0007026!9.01e-14!116;UBERON:0005409!1.11e-13!47;UBERON:0005177!3.76e-13!79;UBERON:0000160!4.11e-13!31;UBERON:0004921!1.00e-12!114;UBERON:0000466!2.13e-10!79;UBERON:0009569!3.39e-10!66;UBERON:0002100!5.91e-10!90;UBERON:0000344!3.71e-09!15;UBERON:0001242!6.91e-08!13;UBERON:0000060!6.91e-08!13;UBERON:0001262!6.91e-08!13;UBERON:0004786!6.91e-08!13;UBERON:0004923!1.36e-07!24
}}
}}

Revision as of 16:38, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:20532100..20532111,+p4@Sertad2
Mm9::chr5:32913568..32913618,+p1@Yes1
Mm9::chr6:94233842..94233930,-p1@Magi1
Mm9::chr8:25549409..25549424,-p1@1810011O10Rik
Mm9::chr8:58773375..58773389,+p1@Hpgd
Mm9::chr9:107470234..107470272,+p@chr9:107470234..107470272
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:001640415-hydroxyprostaglandin dehydrogenase (NAD+) activity0.033145236399496



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
endoderm-derived structure2.67e-14118
endoderm2.67e-14118
presumptive endoderm2.67e-14118
digestive system9.01e-14116
digestive tract9.01e-14116
primitive gut9.01e-14116
gastrointestinal system1.11e-1347
trunk region element3.76e-1379
intestine4.11e-1331
subdivision of digestive tract1.00e-12114
immaterial anatomical entity2.13e-1079
subdivision of trunk3.39e-1066
trunk5.91e-1090
mucosa3.71e-0915
intestinal mucosa6.91e-0813
anatomical wall6.91e-0813
wall of intestine6.91e-0813
gastrointestinal system mucosa6.91e-0813
organ component layer1.36e-0724


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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