Personal tools

Coexpression cluster:C3095: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 6: Line 6:
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000477!9.69e-20!286;UBERON:0000483!1.78e-19!309;UBERON:0000119!5.00e-19!312;UBERON:0004111!6.74e-18!241;UBERON:0000468!3.89e-17!659;UBERON:0000064!2.17e-15!219;UBERON:0000025!5.25e-15!194;UBERON:0000481!1.43e-14!347;UBERON:0001986!3.71e-13!18;UBERON:0004638!3.71e-13!18;UBERON:0004852!3.71e-13!18;UBERON:0000480!4.18e-13!626;UBERON:0000475!4.62e-13!365;UBERON:0000467!4.69e-13!625;UBERON:0007023!1.37e-11!115;UBERON:0003914!2.28e-11!118;UBERON:0000922!8.83e-11!612;UBERON:0000487!1.18e-10!22;UBERON:0002050!1.86e-09!605;UBERON:0005423!1.86e-09!605;UBERON:0003103!2.87e-09!69;UBERON:0000923!3.44e-09!604;UBERON:0005291!3.44e-09!604;UBERON:0006598!3.44e-09!604;UBERON:0002532!3.44e-09!604;UBERON:0009569!4.83e-09!113;UBERON:0006914!5.95e-09!25;UBERON:0000080!6.14e-09!18;UBERON:0002120!6.14e-09!18;UBERON:0004875!6.14e-09!18;UBERON:0005721!6.14e-09!18;UBERON:0005754!6.14e-09!18;UBERON:0007297!6.14e-09!18;UBERON:0004876!8.99e-09!20;UBERON:0002049!1.61e-08!79;UBERON:0007798!1.61e-08!79;UBERON:0006555!1.67e-08!17;UBERON:0005103!1.67e-08!17;UBERON:0000083!1.67e-08!17;UBERON:0009201!1.67e-08!17;UBERON:0004819!1.67e-08!17;UBERON:0006553!1.67e-08!17;UBERON:0003074!1.67e-08!17;UBERON:0003060!1.67e-08!17;UBERON:0000055!1.87e-08!69;UBERON:0000466!1.92e-08!126;UBERON:0003104!3.20e-08!238;UBERON:0009142!3.20e-08!238;UBERON:0003887!4.93e-08!21;UBERON:0004211!5.05e-08!16;UBERON:0001285!5.05e-08!16;UBERON:0007684!5.05e-08!16;UBERON:0003220!5.05e-08!16;UBERON:0004208!5.05e-08!16;UBERON:0000353!6.44e-08!17;UBERON:0000464!9.29e-08!104;UBERON:0002417!1.45e-07!61;UBERON:0000916!1.45e-07!61;UBERON:0003915!1.47e-07!9;UBERON:0004700!1.47e-07!9;UBERON:0001917!1.47e-07!9;UBERON:0005177!1.95e-07!107;UBERON:0001008!2.12e-07!45;UBERON:0003064!3.25e-07!37;UBERON:0000063!3.49e-07!97;UBERON:0001048!3.75e-07!168;UBERON:0000489!4.34e-07!32;UBERON:0006554!5.11e-07!44;UBERON:0004872!6.94e-07!84;UBERON:0005172!7.17e-07!55;UBERON:0005173!7.17e-07!55;UBERON:0002100!9.43e-07!216
|ontology_enrichment_uberon=UBERON:0000477!9.69e-20!286;UBERON:0000483!1.78e-19!309;UBERON:0000119!5.00e-19!312;UBERON:0004111!6.74e-18!241;UBERON:0000468!3.89e-17!659;UBERON:0000064!2.17e-15!219;UBERON:0000025!5.25e-15!194;UBERON:0000481!1.43e-14!347;UBERON:0001986!3.71e-13!18;UBERON:0004638!3.71e-13!18;UBERON:0004852!3.71e-13!18;UBERON:0000480!4.18e-13!626;UBERON:0000475!4.62e-13!365;UBERON:0000467!4.69e-13!625;UBERON:0007023!1.37e-11!115;UBERON:0003914!2.28e-11!118;UBERON:0000922!8.83e-11!612;UBERON:0000487!1.18e-10!22;UBERON:0002050!1.86e-09!605;UBERON:0005423!1.86e-09!605;UBERON:0003103!2.87e-09!69;UBERON:0000923!3.44e-09!604;UBERON:0005291!3.44e-09!604;UBERON:0006598!3.44e-09!604;UBERON:0002532!3.44e-09!604;UBERON:0009569!4.83e-09!113;UBERON:0006914!5.95e-09!25;UBERON:0000080!6.14e-09!18;UBERON:0002120!6.14e-09!18;UBERON:0004875!6.14e-09!18;UBERON:0005721!6.14e-09!18;UBERON:0005754!6.14e-09!18;UBERON:0007297!6.14e-09!18;UBERON:0004876!8.99e-09!20;UBERON:0002049!1.61e-08!79;UBERON:0007798!1.61e-08!79;UBERON:0006555!1.67e-08!17;UBERON:0005103!1.67e-08!17;UBERON:0000083!1.67e-08!17;UBERON:0009201!1.67e-08!17;UBERON:0004819!1.67e-08!17;UBERON:0006553!1.67e-08!17;UBERON:0003074!1.67e-08!17;UBERON:0003060!1.67e-08!17;UBERON:0000055!1.87e-08!69;UBERON:0000466!1.92e-08!126;UBERON:0003104!3.20e-08!238;UBERON:0009142!3.20e-08!238;UBERON:0003887!4.93e-08!21;UBERON:0004211!5.05e-08!16;UBERON:0001285!5.05e-08!16;UBERON:0007684!5.05e-08!16;UBERON:0003220!5.05e-08!16;UBERON:0004208!5.05e-08!16;UBERON:0000353!6.44e-08!17;UBERON:0000464!9.29e-08!104;UBERON:0002417!1.45e-07!61;UBERON:0000916!1.45e-07!61;UBERON:0003915!1.47e-07!9;UBERON:0004700!1.47e-07!9;UBERON:0001917!1.47e-07!9;UBERON:0005177!1.95e-07!107;UBERON:0001008!2.12e-07!45;UBERON:0003064!3.25e-07!37;UBERON:0000063!3.49e-07!97;UBERON:0001048!3.75e-07!168;UBERON:0000489!4.34e-07!32;UBERON:0006554!5.11e-07!44;UBERON:0004872!6.94e-07!84;UBERON:0005172!7.17e-07!55;UBERON:0005173!7.17e-07!55;UBERON:0002100!9.43e-07!216
|tfbs_overrepresentation=0.147255,0.0586687,0.039404,0.0477154,0.0214323,0.0460856,0.0430074,0.0172144,0.03272,0.0257057,0.139423,0.225367,0.188771,0.125978,0.148679,0.0619003,0.010441,0.0982016,0.0528514,0.108057,0.188635,0.00920475,0.081977,0.0948982,0.0415721,0.0250931,0.209392,0.0907212,0.143747,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.324808,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,5.71625e-05,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.167053,0.0831028,0.067678,0.00408688,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.0472875,0.0347684,0.064341,0.209032,0.608896,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.21992,0.153631,0.0927458,0.27413,0.0574857,0.0422457,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.144217,0.0400492,0.182599,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.0223702,0.155998,0.0641358,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.273479,0.114283,0.0400322,0.127369,0.0403542,0.00660878,0.179689,0.137725,0.0255071,0.0541353,0.0799324,0.090079,0.140334,0.00115947,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.0187509,0.122935,0.228812,0.112671,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.00186183,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.000610418,0.169057,0.164202,0.100942,0.062995,0.10299,0.14193,0.37245,0.0128655,0.0137227,0.0738599,0.126611,0.138852,0.085973,0.060453,0.059896,0.0108418,0.384785,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.0381183,0.163502,0.214803,0.182472,0.348993,0.0983991,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.0119747,0.00713165,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.0585224,0.0619218,0.1751,0.0141386,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.0356268,0.446759,0.0865903,0.0380459,0.130174,0.219944,0.00909613,0.0199061,0.268011,0.051522,0.252249,0.00156905,0.335423,0.0185583,0.261553,0.00318602,0.0806291,0.309233,0.49143,0.0619618,0.395854,0.329568,0.178727,0.0164332,0.271958,0.292154,0.0964816,0.39729,0.0582602,0.0139202,0.187251,0.000106625,0.181715,0.0186051,0.109988,0.0620388,0.218329,0.107929,0.0821552,0.025356,0.0217334,0.528324,0.000977524,0.0792797,0.00226755,0.142924,0.253571,0.276829,0.301787,0.000594064,0.316882,0.223503,0.503224,0.603208,0.283727,0.314747,0.000273712,0.291709,0.448095,0.000269721,0.102333,0.292835,0.0280875,0.439556,0.0807167,0.00194724,0.0694028,0.18237,0.126021,0.0310069,0.0512465,0.275351,0.0304678,0.185661,0.346319,0.179399,0.270984,0.0772647,0.155555,0.00637776,0.00691094,0.248634,0.281576,0.472384,0.163244,0.0670502,0.0730934,0.184794,0.00243366,0.176034,0.217247,0.1002,0.0267008,0.0462094,0.191921,0.448039,0.218623,0.0550136,0.032738,0.0451077,0.0747529,0.0284893,0.28275,0.061213,0.154921,0.294698,0.0671437,0.138202,0.289204,0.327108,0.109738,0.278044,0.085507,0.00262586,0.228096,0.336314,0.19763,0.15631,0.0530502,0.00242214,0.0293525,0.0181002,0.00654277,0.000203002,0.335105,0.144809,0.145539,0.385517,0.376191,0.119597,0.459928,0.0348837,0.152681,0.0465712,0.137098,0.0369524,0.134788,0.0985856,0.0460163,0.293698,0.00488039,0.343734,0.306556,0.305777,0.00257275,0.000782215,0.522888,0.284629,0.0379506,0.0741332,0.226257,0.0965765,0.41707,0.363685,0.130283,0.166672,0.206222,0.171685,0.0224921,0.020698,0.00407232,0.00872205,0.0479524,0.0439467,0.141758,0.124432,0.00680512,0.159617,0.238587,0.372281,0.232251,0.189515,0.0891382,0.0595618,0.171389,0.0178839,0.0688327,0.0081614,0.34988,0.136757,0.404569,0.0847452,0.0793778,0.00689935,0.0697683,0.0556835,0.0198561,0.0779981,0.0575676,0.144322,0.223391,0.203656,0.00307017,0.441735,0.191777,0.111931,0.0051519,0.0435386,0.303336,0.126478,0.134852,0.10689,0.0413156,0.00201405,0.0842821,0.0179103,0.303939,0.279795,0.0886747,0.0464827,0.169603,0.114583,0.00566743,0.00417292,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.346372,0.0499762,0.0828956,0.0666953,0.0011669,0.111277,0.026047,0.000810221,0.0205132,0.132201,0.188694,0.0481795,0.199971,0.406014,0.127758,0.175785,0.0181729,0.169234,0.0876426,0.0952322,0.0112557,0.222432,0.107043,0.275244,0.00481323,0.00100412,0.141119,0.00187586,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.28262,0.517717,0.137332,0.0145999,0.0656973,0.000110481,0.220538,0.0801488,0.0757897,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.174921,0.370421,0.0330727,0.348757,0.02609,0.0394698,0.0596469,0.419264,0.122476,0.108872,0.11002,0.26144,0.0286025,0.549354,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.253693,0.217069,0.019326,0.131088,0.0144628,0.237101,0.286988,0.0761239,0.172491,0.0818785,0.182701,0.335058,0.147698,0.141463,0.167267,0.140622,0.0889592,0.309588,0.28711,0.0473033,0.094881,0.022113,0.132886,0.0774373,0.109194,0.128564,0.131452,0.0306206,0.0226843,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.0425274,0.047822,0.288159,0.21727,0.289306,0.119215,0.192475,0.177967,0.547859,0.057571,0.047591,0.0143259,0.0608699,0.175319,0.300597,0.0713214,0.0271723,0.291114,0.0355833,0.125606,0.175094,0.00352878,0.297678,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.00166615,0.234298,0.0759837,0.286863,0.152372,7.74968e-05,0.218271,0.101607,0.327067,0.172982,0.0661495,0.151597,0.0626744,0.191335,0.148574,0.15663,0.155821,0.0718905,0.0919008,0.0602373,0.144304,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.228144,0.251466,0.288096,0.00738316,0.0838874,0.331451,0.113145,0.112651,0.186638,0.174776,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.257598,0.103667,0.113069,0.025556,0.16791,0.09066,0.220462,0.166967,0.188651,0.0813902,0.184948,0.156261,0.0546539,0.0062542,0.0590944,0.247324,0.178389,0.0257622,0.231073,0.407281,0.0743925,0.0360851,0.412187,0.131093,0.0434602,0.133616,0.418146,0.0785808,0.449036,0.0162067,0.231447,0.000168888,0.43956,0.37006,0.10748,0.00327292,0.197484,0.396996,0.36145,0.0160226,0.000142346,0.216033,0.00417723,0.11074,0.0411943,0.00168795,0.145312,0.153829,0.0217093,0.522904,0.0199034,0.0572701,0.227104,0.0380245,0.00310917,0.00161115,0.0450114,0.504757,0.192225,0.0108655,0.28907,0.164197,0.128922,0.0461094,0.0556235,0.138768,0.336276,0.00403041,0.0366482,0.119142,0.243383,0.00448654,0.000165723,0.0115792,0.683217,0.161598,0.013901,0.00422412,0.496032,0.00613559,0.0013757,0.00500957,0.477353,0.0201095,0.0508568,4.79604e-07,0.20342,0.200493,0.20558,0.000511639,0.0361545,0.107337,0.0696455,0.0131573,0.156104,0.141318,0.411941,0.0961477,0.314438,0.354789,0.0142192,0.230581,0.120226,0.28424,0.0513026,0.00677385,0.181415,0.282286,0.0192486,0.24884,0.01635,0.165147,0.322213,0.000830547,0.33942,0.243065,0.0871388,0.522605,0.00640674,0.00800402,0.222037,0.416621,0.416292,0.128937,0.148994,0.579431,0.204817,0.0233392,0.138871,3.11417e-08,0.166905,0.19783,0.0833851,0.316453,0.00457272,0.175199,0.332919,0.00137548,0.0393909,0.408861,0.0768488,1.5656e-05,0.39088,0.0109626,0.236011,0.0222706,0.273398,0.375787,0.00319628,0.351067,0.0419637,0.0830022,0.305885,0.241132,0.371414,0.30666,0.0516603,0.15059,0.386538,0.508064,0.250964,0.0851927,0.125961,0.504711,0.220231,0.000843922,0.196976,0.191517,0.463751,0.00258603,0.307334,0.127092,0.283463,0.0517073,0.135386,0.399569,0.273281,0.368095,0.275089,0.00157463,0.47795,0.0740334,0.339729,0.197805,0.0153645,0.387069,0.332774,0.52832,0.299887,0.0193657,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.162568,0.00135583,0.0140817,0.219428,0.0233135,0.0900729,0.0953646,0.166124,0.252184,0.378361,0.0358457,0.20753,0.447185,0.179412,0.00141426,0.220904,0.222977,7.52509e-05,0.310674,0.21801,0.0015337,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.000366137,0.0855609,0.131118,0.20837,0.247588,0.0267847,0.0673329,0.20847,0.0391817,0.113092,0.145701,0.0285999,0.162145,0.228955,0.0151141,0.0384949,0.0660995,0.0521984,0.0455518,0.0398662,0.201602,0.350452,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.0204324,0.124213,0.0370716,0.30793,0.180606,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,0.0223377,0.21382,0.0232077,0.141867,0.193031,0.249101,0.115972,0.224568,0.0331281,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.256963,0.222798,0.172134,0.176789,0.0969345,0.202137,0.310405,0.280943,0.0257454,0.0822373,0.202065,0.106739,0.00146315,0.0537737,0.15113,0.00312563,0.0407233,0.0537355,0.319922,0.261724,0.211332,0.0012829,0.0297055,0.189559,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.00940743,0.141729,0.263159,0.0359756,0.200105,0.0280973,0.29837,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.0229018,0.19924,0.28689,0.236464,0.325148,0.115817,0.0257187,0.223831,0.11528,0.194982,0.0195259,0.281727,0.283218,0.249955,0.164638,0.224257,0.0935776,0.327622,0.225752,0.207791,0.0958756,0.0859274,0.056548,0.171683,0.158847,0.271275,0.071111,0.270604,0.101021,0.222548,0.175934,0.0130722,0.215705,0.252796,0.205954,0.361435
}}
}}

Revision as of 18:53, 8 August 2012


Full id: C3095_Endothelial_mature_Renal_aorta_Hepatic_melanoma_gall



Phase1 CAGE Peaks

Hg19::chr11:119187829..119187847,-p1@MCAM
Hg19::chr17:1395929..1395942,-p8@MYO1C
Hg19::chr17:1395954..1396027,-p3@MYO1C


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0016461unconventional myosin complex0.00865202040666745
GO:0016328lateral plasma membrane0.00865202040666745
GO:0031941filamentous actin0.00865202040666745
GO:0045178basal part of cell0.00865202040666745
GO:0009925basal plasma membrane0.00865202040666745
GO:0005902microvillus0.00865202040666745
GO:0005884actin filament0.0102989628262972
GO:0044459plasma membrane part0.0272109751028391
GO:0016323basolateral plasma membrane0.0272109751028391
GO:0016459myosin complex0.0308184393693123
GO:0005516calmodulin binding0.0369007816345632



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
anatomical cluster9.69e-20286
epithelium1.78e-19309
cell layer5.00e-19312
anatomical conduit6.74e-18241
multi-cellular organism3.89e-17659
organ part2.17e-15219
tube5.25e-15194
multi-tissue structure1.43e-14347
endothelium3.71e-1318
blood vessel endothelium3.71e-1318
cardiovascular system endothelium3.71e-1318
anatomical group4.18e-13626
organism subdivision4.62e-13365
anatomical system4.69e-13625
adult organism1.37e-11115
epithelial tube2.28e-11118
embryo8.83e-11612
simple squamous epithelium1.18e-1022
embryonic structure1.86e-09605
developing anatomical structure1.86e-09605
compound organ2.87e-0969
germ layer3.44e-09604
embryonic tissue3.44e-09604
presumptive structure3.44e-09604
epiblast (generic)3.44e-09604
subdivision of trunk4.83e-09113
squamous epithelium5.95e-0925
mesonephros6.14e-0918
pronephros6.14e-0918
nephrogenic cord6.14e-0918
pronephric mesoderm6.14e-0918
rostral part of nephrogenic cord6.14e-0918
presumptive pronephric mesoderm6.14e-0918
urogenital ridge8.99e-0920
vasculature1.61e-0879
vascular system1.61e-0879
excretory tube1.67e-0817
mesonephric epithelium1.67e-0817
mesonephric tubule1.67e-0817
nephric duct1.67e-0817
kidney epithelium1.67e-0817
renal duct1.67e-0817
mesonephric duct1.67e-0817
pronephric duct1.67e-0817
vessel1.87e-0869
immaterial anatomical entity1.92e-08126
mesenchyme3.20e-08238
entire embryonic mesenchyme3.20e-08238
intraembryonic coelom4.93e-0821
nephron epithelium5.05e-0816
nephron5.05e-0816
uriniferous tubule5.05e-0816
metanephric mesenchyme5.05e-0816
nephrogenic mesenchyme5.05e-0816
parenchyma6.44e-0817
anatomical space9.29e-08104
abdominal segment of trunk1.45e-0761
abdomen1.45e-0761
endothelial tube1.47e-079
arterial system endothelium1.47e-079
endothelium of artery1.47e-079
trunk region element1.95e-07107
renal system2.12e-0745
intermediate mesoderm3.25e-0737
organ segment3.49e-0797
primordium3.75e-07168
cavitated compound organ4.34e-0732
urinary system structure5.11e-0744
splanchnic layer of lateral plate mesoderm6.94e-0784
abdomen element7.17e-0755
abdominal segment element7.17e-0755
trunk9.43e-07216


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

This analysis result is provided for C0 - C305 clusters.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Coexpression_cluster:C3095&oldid=1991172"