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|full_id=C4087_Mesenchymal_Adipocyte_Alveolar_Hair_Renal_Fibroblast_Pericytes
|full_id=C4087_Mesenchymal_Adipocyte_Alveolar_Hair_Renal_Fibroblast_Pericytes
|id=C4087
|id=C4087
|ontology_enrichment_celltype=CL:0002321!7.50e-26!248;CL:0000220!1.33e-25!246;CL:0000548!2.56e-22!679;CL:0000004!2.56e-22!679;CL:0000255!2.56e-22!679;CL:0000012!4.33e-21!682;CL:0000055!5.17e-20!180;CL:0000183!1.88e-18!59;CL:0000144!3.93e-18!625;CL:0002371!9.88e-18!591;CL:0000222!8.40e-17!119;CL:0000187!5.98e-16!54;CL:0000680!6.17e-16!57;CL:0000056!6.17e-16!57;CL:0000355!6.17e-16!57;CL:0000066!1.06e-15!254;CL:0000393!3.11e-15!60;CL:0000211!3.11e-15!60;CL:0000192!5.09e-15!42;CL:0000514!5.09e-15!42;CL:0000359!4.22e-11!32;CL:0000003!1.71e-10!722;CL:0000325!2.43e-10!39;CL:1000449!1.65e-08!16;CL:1000497!1.36e-07!18;CL:0002518!1.36e-07!18;CL:1000507!3.62e-07!12;CL:1000494!3.62e-07!12;CL:0000136!4.42e-07!15;CL:0002681!4.48e-07!13;CL:0002584!4.48e-07!13;CL:0000057!8.48e-07!75
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0005256!7.29e-25!143;UBERON:0002100!8.88e-22!216;UBERON:0003104!4.29e-19!238;UBERON:0009142!4.29e-19!238;UBERON:0000914!7.90e-18!83;UBERON:0002329!7.90e-18!83;UBERON:0003077!7.90e-18!83;UBERON:0003059!7.90e-18!83;UBERON:0007282!7.90e-18!83;UBERON:0009618!7.90e-18!83;UBERON:0007285!7.90e-18!83;UBERON:0003914!8.17e-18!118;UBERON:0000486!2.76e-16!82;UBERON:0004290!2.89e-16!70;UBERON:0000481!3.56e-16!347;UBERON:0000490!3.05e-15!138;UBERON:0002049!2.24e-13!79;UBERON:0007798!2.24e-13!79;UBERON:0001134!8.11e-13!61;UBERON:0002036!8.11e-13!61;UBERON:0003082!8.11e-13!61;UBERON:0002385!8.58e-13!63;UBERON:0001015!8.58e-13!63;UBERON:0000383!8.58e-13!63;UBERON:0000475!8.86e-13!365;UBERON:0000119!1.23e-12!312;UBERON:0000483!3.10e-12!309;UBERON:0009569!3.73e-10!113;UBERON:0004872!5.29e-10!84;UBERON:0001981!3.03e-09!60;UBERON:0007500!3.03e-09!60;UBERON:0004537!3.03e-09!60;UBERON:0006965!3.03e-09!60;UBERON:0000055!3.05e-09!69;UBERON:0000477!4.99e-09!286;UBERON:0004211!1.65e-08!16;UBERON:0001285!1.65e-08!16;UBERON:0007684!1.65e-08!16;UBERON:0003220!1.65e-08!16;UBERON:0004208!1.65e-08!16;UBERON:0001637!2.40e-08!42;UBERON:0003509!2.40e-08!42;UBERON:0004572!2.40e-08!42;UBERON:0002417!3.78e-08!61;UBERON:0000916!3.78e-08!61;UBERON:0006555!5.91e-08!17;UBERON:0005103!5.91e-08!17;UBERON:0000083!5.91e-08!17;UBERON:0009201!5.91e-08!17;UBERON:0004819!5.91e-08!17;UBERON:0006553!5.91e-08!17;UBERON:0003074!5.91e-08!17;UBERON:0003060!5.91e-08!17;UBERON:0000080!2.23e-07!18;UBERON:0002120!2.23e-07!18;UBERON:0004875!2.23e-07!18;UBERON:0005721!2.23e-07!18;UBERON:0005754!2.23e-07!18;UBERON:0007297!2.23e-07!18;UBERON:0005172!2.27e-07!55;UBERON:0005173!2.27e-07!55;UBERON:0006554!3.05e-07!44;UBERON:0004535!3.19e-07!110;UBERON:0009773!3.62e-07!12;UBERON:0001231!3.62e-07!12;UBERON:0004810!3.62e-07!12;UBERON:0001048!4.30e-07!168;UBERON:0001225!4.48e-07!13;UBERON:0008987!4.48e-07!13;UBERON:0005085!5.56e-07!29;UBERON:0001008!5.63e-07!45;UBERON:0004119!7.47e-07!169;UBERON:0000925!7.47e-07!169;UBERON:0006595!7.47e-07!169;UBERON:0004876!8.48e-07!20
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Revision as of 14:44, 21 May 2012


Full id: C4087_Mesenchymal_Adipocyte_Alveolar_Hair_Renal_Fibroblast_Pericytes



Phase1 CAGE Peaks

Hg19::chr22:19166235..19166238,-p4@SLC25A1
Hg19::chr22:19166241..19166257,-p1@SLC25A1
Hg19::chr22:19166269..19166306,-p2@SLC25A1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
embryonic cell7.50e-26248
animal cell2.56e-22679
eukaryotic cell2.56e-22679
non-terminally differentiated cell5.17e-20180
contractile cell1.88e-1859
somatic cell9.88e-18591
mesodermal cell8.40e-17119
muscle cell5.98e-1654
muscle precursor cell6.17e-1657
myoblast6.17e-1657
multi-potent skeletal muscle stem cell6.17e-1657
epithelial cell1.06e-15254
electrically responsive cell3.11e-1560
electrically active cell3.11e-1560
smooth muscle cell5.09e-1542
smooth muscle myoblast5.09e-1542
vascular associated smooth muscle cell4.22e-1132
native cell1.71e-10722
stuff accumulating cell2.43e-1039
epithelial cell of nephron1.65e-0816
kidney cell1.36e-0718
kidney epithelial cell1.36e-0718
kidney tubule cell3.62e-0712
nephron tubule epithelial cell3.62e-0712
fat cell4.42e-0715
kidney cortical cell4.48e-0713
renal cortical epithelial cell4.48e-0713
fibroblast8.48e-0775
Uber Anatomy
Ontology termp-valuen
trunk mesenchyme7.29e-25143
trunk8.88e-22216
mesenchyme4.29e-19238
entire embryonic mesenchyme4.29e-19238
somite7.90e-1883
paraxial mesoderm7.90e-1883
presomitic mesoderm7.90e-1883
presumptive segmental plate7.90e-1883
trunk paraxial mesoderm7.90e-1883
presumptive paraxial mesoderm7.90e-1883
epithelial tube8.17e-18118
multilaminar epithelium2.76e-1682
dermomyotome2.89e-1670
multi-tissue structure3.56e-16347
unilaminar epithelium3.05e-15138
vasculature2.24e-1379
vascular system2.24e-1379
skeletal muscle tissue8.11e-1361
striated muscle tissue8.11e-1361
myotome8.11e-1361
muscle tissue8.58e-1363
musculature8.58e-1363
musculature of body8.58e-1363
organism subdivision8.86e-13365
cell layer1.23e-12312
epithelium3.10e-12309
subdivision of trunk3.73e-10113
splanchnic layer of lateral plate mesoderm5.29e-1084
blood vessel3.03e-0960
epithelial tube open at both ends3.03e-0960
blood vasculature3.03e-0960
vascular cord3.03e-0960
vessel3.05e-0969
anatomical cluster4.99e-09286
nephron epithelium1.65e-0816
nephron1.65e-0816
uriniferous tubule1.65e-0816
metanephric mesenchyme1.65e-0816
nephrogenic mesenchyme1.65e-0816
artery2.40e-0842
arterial blood vessel2.40e-0842
arterial system2.40e-0842
abdominal segment of trunk3.78e-0861
abdomen3.78e-0861
excretory tube5.91e-0817
mesonephric epithelium5.91e-0817
mesonephric tubule5.91e-0817
nephric duct5.91e-0817
kidney epithelium5.91e-0817
renal duct5.91e-0817
mesonephric duct5.91e-0817
pronephric duct5.91e-0817
mesonephros2.23e-0718
pronephros2.23e-0718
nephrogenic cord2.23e-0718
pronephric mesoderm2.23e-0718
rostral part of nephrogenic cord2.23e-0718
presumptive pronephric mesoderm2.23e-0718
abdomen element2.27e-0755
abdominal segment element2.27e-0755
urinary system structure3.05e-0744
cardiovascular system3.19e-07110
renal tubule3.62e-0712
nephron tubule3.62e-0712
nephron tubule epithelium3.62e-0712
primordium4.30e-07168
cortex of kidney4.48e-0713


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

This analysis result is provided for C0 - C305 clusters.

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