FFCP PHASE1:Hg19::chrX:55246809..55246816,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=90737 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29992 | |||
|TSSclassifier=strong | |||
|UniProt=Q5JUL0 | |||
|association_with_transcript=17bp_to_NM_001013435,uc004duk.2_5end | |||
|coexpression_cluster_id=C4876 | |||
|description=CAGE_peak_3_at_PAGE5_5end | |||
|id=chrX:55246809..55246816,+ | |||
|ontology_enrichment_celltype=CL:0000054!9.10e-15!2;CL:0000137!9.10e-15!2;CL:0000092!9.10e-15!2;CL:0002178!5.01e-10!3;CL:0002127!1.77e-08!1;CL:0000914!1.77e-08!1;CL:0000911!1.77e-08!1;CL:0000814!1.77e-08!1;CL:0002042!1.77e-08!1;CL:0002039!1.77e-08!1;CL:0002040!1.77e-08!1;CL:0002041!1.77e-08!1 | |||
|ontology_enrichment_celltype_v019=CL:0000054;1.05e-25;2!CL:0000137;1.05e-25;2!CL:0000092;1.05e-25;2!CL:0002178;2.95e-17;3!CL:0002127;3.28e-14;1!CL:0000911;3.28e-14;1!CL:0000814;3.28e-14;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000054,1.12e-25,2;CL:0000137,1.12e-25,2;CL:0000092,1.12e-25,2;CL:0002178,2.95e-17,3;CL:0002127,3.50e-14,1;CL:0000914,3.50e-14,1;CL:0000911,3.50e-14,1;CL:0000814,3.50e-14,1;CL:0002042,3.50e-14,1;CL:0002039,3.50e-14,1;CL:0002040,3.50e-14,1;CL:0002041,3.50e-14,1;CL:0000893,9.87e-08,2;CL:0002489,9.87e-08,2;CL:0000809,9.87e-08,2;CL:0000808,9.87e-08,2;CL:0000894,9.87e-08,2;CL:0000806,9.87e-08,2;CL:0000807,9.87e-08,2;CL:0000805,9.87e-08,2;CL:0002425,9.87e-08,2 | |||
|ontology_enrichment_development_v019=CL:0002425;9.55e-08;2 | |||
|ontology_enrichment_disease=DOID:200!9.10e-15!2;DOID:4305!9.10e-15!2;DOID:1036!9.23e-14!8;DOID:201!7.14e-11!6;DOID:0060100!7.14e-11!6;DOID:2531!2.42e-09!51;DOID:0060083!2.42e-09!51;DOID:0060085!2.04e-08!1;DOID:3165!2.04e-08!1;DOID:0060121!2.04e-08!1;DOID:2438!2.04e-08!1;DOID:4418!2.04e-08!1;DOID:3112!5.40e-08!1;DOID:4960!8.12e-08!1;DOID:0070004!8.12e-08!1;DOID:162!1.63e-07!235;DOID:14566!2.82e-07!239;DOID:0050686!6.81e-07!137 | |||
|ontology_enrichment_disease_v019=DOID:200;1.05e-25;2!DOID:4305;1.05e-25;2!DOID:201;4.24e-19;6!DOID:0060100;4.24e-19;6!DOID:1036;1.61e-14;8!DOID:0060085;4.53e-14;1!DOID:3165;4.53e-14;1!DOID:0060121;4.53e-14;1!DOID:2438;4.53e-14;1!DOID:4418;4.53e-14;1!DOID:2531;1.75e-09;51!DOID:0060083;1.75e-09;51!DOID:3910;9.55e-08;2!DOID:3493;1.70e-07;2!DOID:4231;1.99e-07;2!DOID:1907;1.99e-07;2!DOID:1240;6.26e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:200,1.12e-25,2;DOID:4305,1.12e-25,2;DOID:201,4.11e-19,6;DOID:0060100,4.11e-19,6;DOID:1036,1.69e-14,8;DOID:0060085,4.53e-14,1;DOID:3165,4.53e-14,1;DOID:0060121,4.53e-14,1;DOID:2438,4.53e-14,1;DOID:4418,4.53e-14,1;DOID:2531,2.48e-11,51;DOID:0060083,2.48e-11,51;DOID:0050686,1.74e-09,137;DOID:162,1.36e-08,235;DOID:14566,2.24e-08,239;DOID:1240,6.65e-08,39;DOID:3910,9.25e-08,2;DOID:3493,1.75e-07,2;DOID:4231,1.87e-07,2;DOID:1907,1.87e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0001282!2.19e-08!1;UBERON:0009842!2.19e-08!1;UBERON:0003704!2.19e-08!1;UBERON:0001171!2.19e-08!1;UBERON:0001172!2.19e-08!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0001282;5.15e-14;1!UBERON:0009842;5.15e-14;1!UBERON:0003704;5.15e-14;1!UBERON:0001171;5.15e-14;1!UBERON:0001172;5.15e-14;1!UBERON:0000945;9.62e-11;5!UBERON:0010039;9.62e-11;5!UBERON:0004903;9.55e-08;2!UBERON:0002173;9.55e-08;2!UBERON:0002186;9.55e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001282,5.15e-14,1;UBERON:0009842,5.15e-14,1;UBERON:0003704,5.15e-14,1;UBERON:0001171,5.15e-14,1;UBERON:0001172,5.15e-14,1;UBERON:0004903,9.25e-08,2;UBERON:0002173,9.25e-08,2;UBERON:0002186,9.25e-08,2;UBERON:0000945,4.84e-07,8;UBERON:0010039,4.84e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.5623024232168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.00598091699461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.9839507661021,0,0,0,0,0,0,0,0,0,0,0,0,0,5.01345045726805,0,0,0,0,0,0,0,0,0,3.60953056987489,2.35275041181287,4.02771808742022,0.189753732724185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0,0,0,4.65942543798953,6.35886757449567,0,0,0.480952921509202,0,1.39866726707491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.68296996299927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.172214979660816,0,2.57748330352577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1441462864015,0,0,0,4.43751151147744,0,0,0.49131575253029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.4352581765335,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378893491091197,0.535928260312357,0,0,0,0,0,0,4.48527450322454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@PAGE5 | |||
}} |
Revision as of 05:50, 23 January 2014
Short description: | p3@PAGE5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PAGE5_5end |
Coexpression cluster: | C4876_lymphangiectasia_NK_bronchioalveolar_fibrosarcoma_thyroid_fibrous_cholangiocellular |
Association with transcript: | 17bp_to_NM_001013435, uc004duk.2_5end |
EntrezGene: | PAGE5 |
HGNC: | 29992 |
UniProt: | Q5JUL0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone matrix secreting cell | 1.12e-25 | 2 |
osteocyte | 1.12e-25 | 2 |
osteoclast | 1.12e-25 | 2 |
epithelial cell of stomach | 2.95e-17 | 3 |
innate effector T cell | 3.50e-14 | 1 |
immature NK T cell | 3.50e-14 | 1 |
effector T cell | 3.50e-14 | 1 |
mature NK T cell | 3.50e-14 | 1 |
immature NK T cell stage IV | 3.50e-14 | 1 |
immature NK T cell stage I | 3.50e-14 | 1 |
immature NK T cell stage II | 3.50e-14 | 1 |
immature NK T cell stage III | 3.50e-14 | 1 |
thymocyte | 9.87e-08 | 2 |
double negative thymocyte | 9.87e-08 | 2 |
double-positive, alpha-beta thymocyte | 9.87e-08 | 2 |
DN4 thymocyte | 9.87e-08 | 2 |
DN1 thymic pro-T cell | 9.87e-08 | 2 |
DN2 thymocyte | 9.87e-08 | 2 |
DN3 thymocyte | 9.87e-08 | 2 |
immature single positive thymocyte | 9.87e-08 | 2 |
early T lineage precursor | 9.87e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
intralobular bile duct | 5.15e-14 | 1 |
acinus | 5.15e-14 | 1 |
intrahepatic bile duct | 5.15e-14 | 1 |
portal lobule | 5.15e-14 | 1 |
hepatic acinus | 5.15e-14 | 1 |
bronchoalveolar duct junction | 9.25e-08 | 2 |
alveolar duct | 9.25e-08 | 2 |
bronchiole | 9.25e-08 | 2 |
stomach | 4.84e-07 | 8 |
food storage organ | 4.84e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
giant cell tumor | 1.12e-25 | 2 |
bone giant cell tumor | 1.12e-25 | 2 |
connective tissue cancer | 4.11e-19 | 6 |
musculoskeletal system cancer | 4.11e-19 | 6 |
chronic leukemia | 1.69e-14 | 8 |
organ system benign neoplasm | 4.53e-14 | 1 |
skin benign neoplasm | 4.53e-14 | 1 |
integumentary system benign neoplasm | 4.53e-14 | 1 |
dermis tumor | 4.53e-14 | 1 |
cutaneous fibrous histiocytoma | 4.53e-14 | 1 |
hematologic cancer | 2.48e-11 | 51 |
immune system cancer | 2.48e-11 | 51 |
organ system cancer | 1.74e-09 | 137 |
cancer | 1.36e-08 | 235 |
disease of cellular proliferation | 2.24e-08 | 239 |
leukemia | 6.65e-08 | 39 |
lung adenocarcinoma | 9.25e-08 | 2 |
signet ring cell adenocarcinoma | 1.75e-07 | 2 |
histiocytoma | 1.87e-07 | 2 |
malignant fibroxanthoma | 1.87e-07 | 2 |