FFCP PHASE1:Mm9::chr6:8899052..8899068,+: Difference between revisions
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{{FFCP|EntrezGene=18231|HGNC=|MCL_coexpression_id=1|UniProt=Q61200|association_with_transcript=438bp_to_ENSMUST00000160300,uc009aya.1,uc009ayb.1_5end|description=CAGE_peak_9_at_Nxph1_5end|id=chr6:8899052..8899068,+|ontology_enrichment_celltype=CL:0000117!9.18e-25!23;CL:0000337!9.18e-25!23;CL:0000540!8.25e-15!33;CL:0000047!8.25e-15!33;CL:0000031!8.25e-15!33;CL:0000404!8.25e-15!33;CL:0000393!2.61e-12!39;CL:0000211!2.61e-12!39;CL:0002319!1.24e-09!43;CL:0000221!2.97e-09!44;CL:0000133!2.97e-09!44;CL:0000055!5.55e-08!50|ontology_enrichment_celltype_v019_2=CL:0000117,6.62e-30,23;CL:0000337,6.62e-30,23;CL:0000540,1.51e-19,33;CL:0000047,1.51e-19,33;CL:0000031,1.51e-19,33;CL:0000404,1.51e-19,33;CL:0000393,6.90e-16,39;CL:0000211,6.90e-16,39;CL:0002319,5.10e-14,43;CL:0000221,1.32e-13,44;CL:0000133,1.32e-13,44;CL:0002612,2.27e-08,3;CL:0002610,3.36e-08,3;CL:0002614,7.67e-08,3;CL:0002613,2.12e-07,3;CL:0000120,2.35e-07,3;CL:0002321,4.73e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!7.16e-30!34;UBERON:0001049!1.89e-28!52;UBERON:0005068!1.89e-28!52;UBERON:0006241!1.89e-28!52;UBERON:0007135!1.89e-28!52;UBERON:0001017!2.02e-26!73;UBERON:0005743!2.02e-26!73;UBERON:0000955!2.84e-26!50;UBERON:0006238!2.84e-26!50;UBERON:0000073!2.67e-25!75;UBERON:0001016!2.67e-25!75;UBERON:0002616!4.15e-25!49;UBERON:0002791!6.29e-24!29;UBERON:0003528!6.29e-24!29;UBERON:0001893!6.29e-24!29;UBERON:0000033!1.46e-22!63;UBERON:0002346!2.81e-21!71;UBERON:0003075!2.81e-21!71;UBERON:0007284!2.81e-21!71;UBERON:0003080!7.78e-20!40;UBERON:0002780!8.43e-19!39;UBERON:0001890!8.43e-19!39;UBERON:0006240!8.43e-19!39;UBERON:0003056!1.14e-18!49;UBERON:0000956!8.39e-18!21;UBERON:0001869!8.39e-18!21;UBERON:0000203!8.39e-18!21;UBERON:0004121!8.42e-18!102;UBERON:0000924!8.42e-18!102;UBERON:0006601!8.42e-18!102;UBERON:0002619!3.17e-14!17;UBERON:0007811!5.25e-13!86;UBERON:0002021!1.54e-12!10;UBERON:0000411!1.54e-12!10;UBERON:0001950!1.54e-12!10;UBERON:0000153!2.63e-12!94;UBERON:0003076!3.99e-09!12;UBERON:0003057!3.99e-09!12;UBERON:0002240!3.42e-08!6;UBERON:0005174!3.42e-08!6;UBERON:0001137!3.42e-08!6;UBERON:0002298!6.29e-08!6;UBERON:0000025!3.13e-07!114;UBERON:0002420!3.13e-07!8;UBERON:0007245!3.13e-07!8;UBERON:0010009!3.13e-07!8;UBERON:0010011!3.13e-07!8;UBERON:0000454!3.13e-07!8;UBERON:0001948!3.76e-07!5;UBERON:0002315!3.76e-07!5|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.22e-43,54;UBERON:0001017,1.35e-41,73;UBERON:0001016,2.68e-40,75;UBERON:0002020,3.30e-39,34;UBERON:0001049,9.91e-39,52;UBERON:0005068,9.91e-39,52;UBERON:0006241,9.91e-39,52;UBERON:0007135,9.91e-39,52;UBERON:0004121,2.61e-30,95;UBERON:0000924,2.61e-30,95;UBERON:0006601,2.61e-30,95;UBERON:0002346,3.30e-30,64;UBERON:0003075,3.30e-30,64;UBERON:0007284,3.30e-30,64;UBERON:0000955,3.80e-29,47;UBERON:0006238,3.80e-29,47;UBERON:0003528,1.49e-28,29;UBERON:0002791,1.49e-28,29;UBERON:0001893,1.49e-28,29;UBERON:0002616,3.14e-27,46;UBERON:0003080,1.08e-26,40;UBERON:0010371,1.19e-25,73;UBERON:0002780,7.16e-25,39;UBERON:0001890,7.16e-25,39;UBERON:0006240,7.16e-25,39;UBERON:0002021,2.65e-23,10;UBERON:0000411,2.65e-23,10;UBERON:0001950,2.65e-23,10;UBERON:0003056,8.50e-21,49;UBERON:0010314,5.95e-19,92;UBERON:0002619,3.55e-18,17;UBERON:0000956,5.98e-17,21;UBERON:0001869,5.98e-17,21;UBERON:0000203,5.98e-17,21;UBERON:0002240,1.09e-14,6;UBERON:0005174,1.09e-14,6;UBERON:0001137,1.09e-14,6;UBERON:0000025,5.58e-14,114;UBERON:0002420,2.86e-13,8;UBERON:0007245,2.86e-13,8;UBERON:0010009,2.86e-13,8;UBERON:0010011,2.86e-13,8;UBERON:0000454,2.86e-13,8;UBERON:0001948,1.23e-12,5;UBERON:0002315,1.23e-12,5;UBERON:0004111,1.29e-12,122;UBERON:0003076,4.04e-12,12;UBERON:0003057,4.04e-12,12;UBERON:0011216,4.42e-11,194;UBERON:0002950,5.45e-10,4;UBERON:0001891,5.45e-10,4;UBERON:0009616,5.45e-10,4;UBERON:0010286,5.45e-10,4;UBERON:0002257,2.27e-08,3;UBERON:0004684,3.36e-08,3;UBERON:0002275,3.36e-08,3;UBERON:0002038,7.67e-08,3;UBERON:0009663,7.67e-08,3;UBERON:0009661,7.67e-08,3;UBERON:0000125,7.67e-08,3;UBERON:0002308,7.67e-08,3;UBERON:0000369,2.86e-07,5;UBERON:0002435,2.86e-07,5;UBERON:0000204,2.86e-07,5;UBERON:0010082,2.86e-07,5;UBERON:0000483,8.29e-07,174|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21389876515759,1.05798195854407,2.53532561402472,0,0,0,0,0,0,0,0.414758449233911,0.810035629990144,0.841299845405528,1.42825492201902,2.65042249141936,1.34739879136449,0.766763768145891,0.919218786610021,3.30347642998166,1.40456071893706,2.30409799884365,1.31886287730194,2.01272815925301,1.56274011167028,1.3959149950069,1.68828783009504,2.90316670775939,2.35702868378934,2.70506193518296,1.86399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258937883647172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0.41889341362691,0,0,0,0,2.09706895166752,0,1.00523481690292,2.43354048269187,0.767146371990992,3.94797284663164,1.29793010454206,0,0,0,0.210441855886474,0,0.229902104433473,0.180062129805349,0,0,0.12811372028485,0,0,0,0,0,0,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05144974282064,0.823236899034275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144649058581512,0,0,0,0,1.76605648986571,2.10981035865966,0,0,0,0,0,0,0,0,0,0,0,2.57057053137446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129159823477731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6942555278512,1.84130094602871,2.29158205375759,1.71853182343688,2.74033007908257,2.2661816921691,2.02506750069542,3.60256962579376,1.35942722695261,2.5888015587591,0.103787347584177,0,0.341467211508268,0.486213434136588,0,0.183843508450014,0.44449345560323,0.206035057238894,0,0.505394423527595,0,0.565879024158229,0.280924522409647,0.192075457214608,0.287177344778066,0.476293691283074,0.231768651889711,0.38581844092741,0,0.294397840268795,0.685738504770831,0.177475806159338,0.238436189947321,0.581385666529314,0.282328141245992,0.25384382367503,0.365855945745545,0,0.271608227691724,0,0,0.0985044823755635,0.409231043169689,0.464810523557898,0.192906610981141,0,0,0.644613162144895,0,0.220591419119515,0.231867835620421|short_description=p9@Nxph1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:18231 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q61200 | |||
|association_with_transcript=438bp_to_ENSMUST00000160300,uc009aya.1,uc009ayb.1_5end | |||
|cluster_id=chr6:8899052..8899068,+ | |||
|description=CAGE_peak_9_at_Nxph1_5end | |||
|id=chr6:8899052..8899068,+ | |||
|ontology_enrichment_celltype=CL:0000117!9.18e-25!23;CL:0000337!9.18e-25!23;CL:0000540!8.25e-15!33;CL:0000047!8.25e-15!33;CL:0000031!8.25e-15!33;CL:0000404!8.25e-15!33;CL:0000393!2.61e-12!39;CL:0000211!2.61e-12!39;CL:0002319!1.24e-09!43;CL:0000221!2.97e-09!44;CL:0000133!2.97e-09!44;CL:0000055!5.55e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.62e-30,23;CL:0000337,6.62e-30,23;CL:0000540,1.51e-19,33;CL:0000047,1.51e-19,33;CL:0000031,1.51e-19,33;CL:0000404,1.51e-19,33;CL:0000393,6.90e-16,39;CL:0000211,6.90e-16,39;CL:0002319,5.10e-14,43;CL:0000221,1.32e-13,44;CL:0000133,1.32e-13,44;CL:0002612,2.27e-08,3;CL:0002610,3.36e-08,3;CL:0002614,7.67e-08,3;CL:0002613,2.12e-07,3;CL:0000120,2.35e-07,3;CL:0002321,4.73e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!7.16e-30!34;UBERON:0001049!1.89e-28!52;UBERON:0005068!1.89e-28!52;UBERON:0006241!1.89e-28!52;UBERON:0007135!1.89e-28!52;UBERON:0001017!2.02e-26!73;UBERON:0005743!2.02e-26!73;UBERON:0000955!2.84e-26!50;UBERON:0006238!2.84e-26!50;UBERON:0000073!2.67e-25!75;UBERON:0001016!2.67e-25!75;UBERON:0002616!4.15e-25!49;UBERON:0002791!6.29e-24!29;UBERON:0003528!6.29e-24!29;UBERON:0001893!6.29e-24!29;UBERON:0000033!1.46e-22!63;UBERON:0002346!2.81e-21!71;UBERON:0003075!2.81e-21!71;UBERON:0007284!2.81e-21!71;UBERON:0003080!7.78e-20!40;UBERON:0002780!8.43e-19!39;UBERON:0001890!8.43e-19!39;UBERON:0006240!8.43e-19!39;UBERON:0003056!1.14e-18!49;UBERON:0000956!8.39e-18!21;UBERON:0001869!8.39e-18!21;UBERON:0000203!8.39e-18!21;UBERON:0004121!8.42e-18!102;UBERON:0000924!8.42e-18!102;UBERON:0006601!8.42e-18!102;UBERON:0002619!3.17e-14!17;UBERON:0007811!5.25e-13!86;UBERON:0002021!1.54e-12!10;UBERON:0000411!1.54e-12!10;UBERON:0001950!1.54e-12!10;UBERON:0000153!2.63e-12!94;UBERON:0003076!3.99e-09!12;UBERON:0003057!3.99e-09!12;UBERON:0002240!3.42e-08!6;UBERON:0005174!3.42e-08!6;UBERON:0001137!3.42e-08!6;UBERON:0002298!6.29e-08!6;UBERON:0000025!3.13e-07!114;UBERON:0002420!3.13e-07!8;UBERON:0007245!3.13e-07!8;UBERON:0010009!3.13e-07!8;UBERON:0010011!3.13e-07!8;UBERON:0000454!3.13e-07!8;UBERON:0001948!3.76e-07!5;UBERON:0002315!3.76e-07!5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.22e-43,54;UBERON:0001017,1.35e-41,73;UBERON:0001016,2.68e-40,75;UBERON:0002020,3.30e-39,34;UBERON:0001049,9.91e-39,52;UBERON:0005068,9.91e-39,52;UBERON:0006241,9.91e-39,52;UBERON:0007135,9.91e-39,52;UBERON:0004121,2.61e-30,95;UBERON:0000924,2.61e-30,95;UBERON:0006601,2.61e-30,95;UBERON:0002346,3.30e-30,64;UBERON:0003075,3.30e-30,64;UBERON:0007284,3.30e-30,64;UBERON:0000955,3.80e-29,47;UBERON:0006238,3.80e-29,47;UBERON:0003528,1.49e-28,29;UBERON:0002791,1.49e-28,29;UBERON:0001893,1.49e-28,29;UBERON:0002616,3.14e-27,46;UBERON:0003080,1.08e-26,40;UBERON:0010371,1.19e-25,73;UBERON:0002780,7.16e-25,39;UBERON:0001890,7.16e-25,39;UBERON:0006240,7.16e-25,39;UBERON:0002021,2.65e-23,10;UBERON:0000411,2.65e-23,10;UBERON:0001950,2.65e-23,10;UBERON:0003056,8.50e-21,49;UBERON:0010314,5.95e-19,92;UBERON:0002619,3.55e-18,17;UBERON:0000956,5.98e-17,21;UBERON:0001869,5.98e-17,21;UBERON:0000203,5.98e-17,21;UBERON:0002240,1.09e-14,6;UBERON:0005174,1.09e-14,6;UBERON:0001137,1.09e-14,6;UBERON:0000025,5.58e-14,114;UBERON:0002420,2.86e-13,8;UBERON:0007245,2.86e-13,8;UBERON:0010009,2.86e-13,8;UBERON:0010011,2.86e-13,8;UBERON:0000454,2.86e-13,8;UBERON:0001948,1.23e-12,5;UBERON:0002315,1.23e-12,5;UBERON:0004111,1.29e-12,122;UBERON:0003076,4.04e-12,12;UBERON:0003057,4.04e-12,12;UBERON:0011216,4.42e-11,194;UBERON:0002950,5.45e-10,4;UBERON:0001891,5.45e-10,4;UBERON:0009616,5.45e-10,4;UBERON:0010286,5.45e-10,4;UBERON:0002257,2.27e-08,3;UBERON:0004684,3.36e-08,3;UBERON:0002275,3.36e-08,3;UBERON:0002038,7.67e-08,3;UBERON:0009663,7.67e-08,3;UBERON:0009661,7.67e-08,3;UBERON:0000125,7.67e-08,3;UBERON:0002308,7.67e-08,3;UBERON:0000369,2.86e-07,5;UBERON:0002435,2.86e-07,5;UBERON:0000204,2.86e-07,5;UBERON:0010082,2.86e-07,5;UBERON:0000483,8.29e-07,174 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21389876515759,1.05798195854407,2.53532561402472,0,0,0,0,0,0,0,0.414758449233911,0.810035629990144,0.841299845405528,1.42825492201902,2.65042249141936,1.34739879136449,0.766763768145891,0.919218786610021,3.30347642998166,1.40456071893706,2.30409799884365,1.31886287730194,2.01272815925301,1.56274011167028,1.3959149950069,1.68828783009504,2.90316670775939,2.35702868378934,2.70506193518296,1.86399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258937883647172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0.41889341362691,0,0,0,0,2.09706895166752,0,1.00523481690292,2.43354048269187,0.767146371990992,3.94797284663164,1.29793010454206,0,0,0,0.210441855886474,0,0.229902104433473,0.180062129805349,0,0,0.12811372028485,0,0,0,0,0,0,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05144974282064,0.823236899034275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144649058581512,0,0,0,0,1.76605648986571,2.10981035865966,0,0,0,0,0,0,0,0,0,0,0,2.57057053137446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129159823477731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6942555278512,1.84130094602871,2.29158205375759,1.71853182343688,2.74033007908257,2.2661816921691,2.02506750069542,3.60256962579376,1.35942722695261,2.5888015587591,0.103787347584177,0,0.341467211508268,0.486213434136588,0,0.183843508450014,0.44449345560323,0.206035057238894,0,0.505394423527595,0,0.565879024158229,0.280924522409647,0.192075457214608,0.287177344778066,0.476293691283074,0.231768651889711,0.38581844092741,0,0.294397840268795,0.685738504770831,0.177475806159338,0.238436189947321,0.581385666529314,0.282328141245992,0.25384382367503,0.365855945745545,0,0.271608227691724,0,0,0.0985044823755635,0.409231043169689,0.464810523557898,0.192906610981141,0,0,0.644613162144895,0,0.220591419119515,0.231867835620421 | |||
|short_description=p9@Nxph1 | |||
}} |
Revision as of 07:02, 6 August 2015
Short description: | p9@Nxph1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_Nxph1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 438bp_to_ENSMUST00000160300, uc009aya.1, uc009ayb.1_5end |
EntrezGene: | 18231 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.62e-30 | 23 |
neuroblast (sensu Vertebrata) | 6.62e-30 | 23 |
neuron | 1.51e-19 | 33 |
neuronal stem cell | 1.51e-19 | 33 |
neuroblast | 1.51e-19 | 33 |
electrically signaling cell | 1.51e-19 | 33 |
electrically responsive cell | 6.90e-16 | 39 |
electrically active cell | 6.90e-16 | 39 |
neural cell | 5.10e-14 | 43 |
ectodermal cell | 1.32e-13 | 44 |
neurectodermal cell | 1.32e-13 | 44 |
neuron of the ventral spinal cord | 2.27e-08 | 3 |
raphe nuclei neuron | 3.36e-08 | 3 |
neuron of the substantia nigra | 7.67e-08 | 3 |
striatum neuron | 2.12e-07 | 3 |
granule cell | 2.35e-07 | 3 |
embryonic cell | 4.73e-07 | 70 |