FFCP PHASE1:Mm9::chr6:82889628..82889646,-: Difference between revisions
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{{FFCP|EntrezGene=20355|HGNC=|MCL_coexpression_id=159|UniProt=D3YWP2,Q9Z123,Q810B2|association_with_transcript=97bp_to_NM_001113481,NM_011350,uc009clo.2,uc012ent.1,uc012enu.1_5end|description=CAGE_peak_3_at_Sema4f_5end|id=chr6:82889628..82889646,-|ontology_enrichment_celltype=CL:0000540!3.35e-15!33;CL:0000047!3.35e-15!33;CL:0000031!3.35e-15!33;CL:0000404!3.35e-15!33;CL:0002319!7.27e-14!43;CL:0000117!8.59e-14!23;CL:0000337!8.59e-14!23;CL:0000221!2.97e-13!44;CL:0000133!2.97e-13!44;CL:0000393!4.11e-11!39;CL:0000211!4.11e-11!39;CL:0000055!3.64e-10!50|ontology_enrichment_celltype_v019_2=CL:0000117,8.10e-37,23;CL:0000337,8.10e-37,23;CL:0000540,7.41e-25,33;CL:0000047,7.41e-25,33;CL:0000031,7.41e-25,33;CL:0000404,7.41e-25,33;CL:0002319,4.49e-21,43;CL:0000393,1.29e-20,39;CL:0000211,1.29e-20,39;CL:0000221,1.57e-20,44;CL:0000133,1.57e-20,44;CL:0002612,1.98e-13,3;CL:0002610,1.03e-12,3;CL:0002613,1.03e-12,3;CL:0002614,2.31e-12,3;CL:0002321,8.01e-12,70;CL:0002611,9.43e-09,2;CL:0000723,2.06e-08,91;CL:0000048,2.06e-08,91;CL:0000034,1.04e-07,97|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.03e-27!75;UBERON:0001016!1.03e-27!75;UBERON:0001017!8.21e-27!73;UBERON:0005743!8.21e-27!73;UBERON:0004121!7.78e-21!102;UBERON:0000924!7.78e-21!102;UBERON:0006601!7.78e-21!102;UBERON:0001049!1.28e-20!52;UBERON:0005068!1.28e-20!52;UBERON:0006241!1.28e-20!52;UBERON:0007135!1.28e-20!52;UBERON:0002346!2.19e-19!71;UBERON:0003075!2.19e-19!71;UBERON:0007284!2.19e-19!71;UBERON:0000955!1.14e-18!50;UBERON:0006238!1.14e-18!50;UBERON:0002616!3.09e-18!49;UBERON:0000033!3.57e-16!63;UBERON:0003080!1.19e-14!40;UBERON:0002780!6.23e-14!39;UBERON:0001890!6.23e-14!39;UBERON:0006240!6.23e-14!39;UBERON:0002020!6.69e-14!34;UBERON:0003056!1.84e-13!49;UBERON:0002791!6.23e-10!29;UBERON:0003528!6.23e-10!29;UBERON:0001893!6.23e-10!29;UBERON:0007811!9.89e-10!86;UBERON:0000153!3.14e-09!94;UBERON:0003076!8.95e-07!12;UBERON:0003057!8.95e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0000073,8.07e-26,54;UBERON:0001017,1.28e-22,73;UBERON:0001016,6.36e-22,75;UBERON:0001948,1.62e-20,5;UBERON:0002315,1.62e-20,5;UBERON:0002020,2.76e-20,34;UBERON:0001049,9.59e-19,52;UBERON:0005068,9.59e-19,52;UBERON:0006241,9.59e-19,52;UBERON:0007135,9.59e-19,52;UBERON:0002420,1.86e-17,8;UBERON:0007245,1.86e-17,8;UBERON:0010009,1.86e-17,8;UBERON:0010011,1.86e-17,8;UBERON:0000454,1.86e-17,8;UBERON:0002240,4.55e-17,6;UBERON:0005174,4.55e-17,6;UBERON:0001137,4.55e-17,6;UBERON:0004121,1.41e-16,95;UBERON:0000924,1.41e-16,95;UBERON:0006601,1.41e-16,95;UBERON:0002950,1.52e-15,4;UBERON:0001891,1.52e-15,4;UBERON:0009616,1.52e-15,4;UBERON:0010286,1.52e-15,4;UBERON:0002346,1.16e-14,64;UBERON:0003075,1.16e-14,64;UBERON:0007284,1.16e-14,64;UBERON:0002257,1.98e-13,3;UBERON:0004684,1.03e-12,3;UBERON:0002275,1.03e-12,3;UBERON:0010371,1.77e-12,73;UBERON:0002038,2.31e-12,3;UBERON:0009663,2.31e-12,3;UBERON:0009661,2.31e-12,3;UBERON:0000125,2.31e-12,3;UBERON:0002308,2.31e-12,3;UBERON:0003080,1.10e-11,40;UBERON:0002780,4.34e-10,39;UBERON:0001890,4.34e-10,39;UBERON:0006240,4.34e-10,39;UBERON:0002616,6.86e-10,46;UBERON:0000955,1.23e-09,47;UBERON:0006238,1.23e-09,47;UBERON:0003528,1.93e-09,29;UBERON:0002791,1.93e-09,29;UBERON:0001893,1.93e-09,29;UBERON:0010314,2.89e-09,92;UBERON:0003056,3.70e-09,49;UBERON:0002256,9.43e-09,2;UBERON:0003076,2.05e-08,12;UBERON:0003057,2.05e-08,12;UBERON:0000369,8.27e-08,5;UBERON:0002435,8.27e-08,5;UBERON:0000204,8.27e-08,5;UBERON:0010082,8.27e-08,5;UBERON:0000025,7.07e-07,114|phase1_expression=0.320297694209588,0,0,0,0,0,0,0.129123323441576,0,0,0,0,0.513602189793617,0.437102012094987,0,0,0,0,0,0.42438965179803,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.683045484958446,0,0,0,0,0,0,0.219686182734472,0,0,0,0,0,0.672187598284928,0,0,0,1.61853168687678,0,0.633831403506179,0,0,0.449949858640699,0,0,1.19840044207362,0.384218305321555,0.311068836925433,0.270011876663381,0.210324961351382,2.57085885963423,1.10434270475807,0.244981598429908,0.191690942036473,0,2.20231761998777,1.40456071893706,1.84327839907492,1.71452174049252,2.19570344645783,1.56274011167028,1.3959149950069,5.6276261003168,1.06958773443767,2.94628585473668,3.98640706237488,2.79599168737951,0.075726193333184,0.906858721281426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253359865475099,0,0.11418387971906,0,0,0,0.608930956624282,0.230615497256059,0.301445281105245,0.117588707135705,0,0,0,0,0,0,0,0,0.585561594023094,0.83778682725382,0,0,0,0,1.04853447583376,0,0.753926112677186,0.347648640384553,1.53429274398198,0.83115217823824,1.29793010454206,0,0.124406970610093,0,0.210441855886474,0,0,0.180062129805349,0,0.272145996605311,0.12811372028485,0.281105173679186,0,0.431135985865684,0.378212160335639,0.175951124163949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,0.514523061896422,0,0,0,0,0,0,0,0.190225626112559,0,0,0,0.198956472041151,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0.241177159752417,0,0,0,0,0,0,0.312037673114561,0,0,0,0.739012760666419,0,0.162964976442026,0.169745085775188,0.234690248288502,0,0,0,0.315270288212382,0,0,0,0,0.144649058581512,0,0,0,0,0.481651769963376,0.703270119553219,0,0,0.315508219416257,0,0.430846795465598,0.238968797952552,0.445597348164788,0.283076530788832,0,0.292255857911312,0.395287777946524,0.321321316421807,0,0.178065603667255,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0.129358683782755,0.214337035031592,0.532020700926821,0.713475270408282,1.31639216481697,0.608929898229199,0,0,0,0,0,0,0,0,0,0.556275906031529,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0.209088296014469,0,0.134864346384821,0.0826534557253359,0,0,0,0,0,0,0.194451188344048,0,0,0,0,0.209718688851422,0,0,0,0,0,0,0,0,0,0,0,0.0762068066549998,0.100826185136841,0,0,0,0,0,0,0,0,0,0,0,0,1.12950368523413,0.920650473014354,0,1.20297227640581,0.685082519770642,0.755393897389701,0,0,0.906284817968409,1.03552062350364,0.103787347584177,0,0.170733605754134,0.486213434136588,0.419226325255965,0.367687016900028,0.666740183404846,0,0.962757628775446,0.758091635291392,0.25347929989024,0.188626341386076,0.37456602987953,0.128050304809739,0.287177344778066,0,0.347652977834566,0.38581844092741,0.412085900803307,0.147198920134397,0.685738504770831,0,0,0.145346416632329,0.376437521661322,0.761531471025089,0.182927972872773,0.263069711437843,0.407412341537585,0,0.474540072496697,0.197008964751127,0,0.309873682371932,0.192906610981141,0.499621155875892,0.233931608445408,0.214871054048298,0.382576664137687,0.441182838239031,0|short_description=p3@Sema4f}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:20355 | |||
|HGNC= | |||
|MCL_coexpression_id=159 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:D3YWP2,uniprot:Q9Z123,uniprot:Q810B2 | |||
|association_with_transcript=97bp_to_NM_001113481,NM_011350,uc009clo.2,uc012ent.1,uc012enu.1_5end | |||
|cluster_id=chr6:82889628..82889646,- | |||
|description=CAGE_peak_3_at_Sema4f_5end | |||
|id=chr6:82889628..82889646,- | |||
|ontology_enrichment_celltype=CL:0000540!3.35e-15!33;CL:0000047!3.35e-15!33;CL:0000031!3.35e-15!33;CL:0000404!3.35e-15!33;CL:0002319!7.27e-14!43;CL:0000117!8.59e-14!23;CL:0000337!8.59e-14!23;CL:0000221!2.97e-13!44;CL:0000133!2.97e-13!44;CL:0000393!4.11e-11!39;CL:0000211!4.11e-11!39;CL:0000055!3.64e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.10e-37,23;CL:0000337,8.10e-37,23;CL:0000540,7.41e-25,33;CL:0000047,7.41e-25,33;CL:0000031,7.41e-25,33;CL:0000404,7.41e-25,33;CL:0002319,4.49e-21,43;CL:0000393,1.29e-20,39;CL:0000211,1.29e-20,39;CL:0000221,1.57e-20,44;CL:0000133,1.57e-20,44;CL:0002612,1.98e-13,3;CL:0002610,1.03e-12,3;CL:0002613,1.03e-12,3;CL:0002614,2.31e-12,3;CL:0002321,8.01e-12,70;CL:0002611,9.43e-09,2;CL:0000723,2.06e-08,91;CL:0000048,2.06e-08,91;CL:0000034,1.04e-07,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.03e-27!75;UBERON:0001016!1.03e-27!75;UBERON:0001017!8.21e-27!73;UBERON:0005743!8.21e-27!73;UBERON:0004121!7.78e-21!102;UBERON:0000924!7.78e-21!102;UBERON:0006601!7.78e-21!102;UBERON:0001049!1.28e-20!52;UBERON:0005068!1.28e-20!52;UBERON:0006241!1.28e-20!52;UBERON:0007135!1.28e-20!52;UBERON:0002346!2.19e-19!71;UBERON:0003075!2.19e-19!71;UBERON:0007284!2.19e-19!71;UBERON:0000955!1.14e-18!50;UBERON:0006238!1.14e-18!50;UBERON:0002616!3.09e-18!49;UBERON:0000033!3.57e-16!63;UBERON:0003080!1.19e-14!40;UBERON:0002780!6.23e-14!39;UBERON:0001890!6.23e-14!39;UBERON:0006240!6.23e-14!39;UBERON:0002020!6.69e-14!34;UBERON:0003056!1.84e-13!49;UBERON:0002791!6.23e-10!29;UBERON:0003528!6.23e-10!29;UBERON:0001893!6.23e-10!29;UBERON:0007811!9.89e-10!86;UBERON:0000153!3.14e-09!94;UBERON:0003076!8.95e-07!12;UBERON:0003057!8.95e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,8.07e-26,54;UBERON:0001017,1.28e-22,73;UBERON:0001016,6.36e-22,75;UBERON:0001948,1.62e-20,5;UBERON:0002315,1.62e-20,5;UBERON:0002020,2.76e-20,34;UBERON:0001049,9.59e-19,52;UBERON:0005068,9.59e-19,52;UBERON:0006241,9.59e-19,52;UBERON:0007135,9.59e-19,52;UBERON:0002420,1.86e-17,8;UBERON:0007245,1.86e-17,8;UBERON:0010009,1.86e-17,8;UBERON:0010011,1.86e-17,8;UBERON:0000454,1.86e-17,8;UBERON:0002240,4.55e-17,6;UBERON:0005174,4.55e-17,6;UBERON:0001137,4.55e-17,6;UBERON:0004121,1.41e-16,95;UBERON:0000924,1.41e-16,95;UBERON:0006601,1.41e-16,95;UBERON:0002950,1.52e-15,4;UBERON:0001891,1.52e-15,4;UBERON:0009616,1.52e-15,4;UBERON:0010286,1.52e-15,4;UBERON:0002346,1.16e-14,64;UBERON:0003075,1.16e-14,64;UBERON:0007284,1.16e-14,64;UBERON:0002257,1.98e-13,3;UBERON:0004684,1.03e-12,3;UBERON:0002275,1.03e-12,3;UBERON:0010371,1.77e-12,73;UBERON:0002038,2.31e-12,3;UBERON:0009663,2.31e-12,3;UBERON:0009661,2.31e-12,3;UBERON:0000125,2.31e-12,3;UBERON:0002308,2.31e-12,3;UBERON:0003080,1.10e-11,40;UBERON:0002780,4.34e-10,39;UBERON:0001890,4.34e-10,39;UBERON:0006240,4.34e-10,39;UBERON:0002616,6.86e-10,46;UBERON:0000955,1.23e-09,47;UBERON:0006238,1.23e-09,47;UBERON:0003528,1.93e-09,29;UBERON:0002791,1.93e-09,29;UBERON:0001893,1.93e-09,29;UBERON:0010314,2.89e-09,92;UBERON:0003056,3.70e-09,49;UBERON:0002256,9.43e-09,2;UBERON:0003076,2.05e-08,12;UBERON:0003057,2.05e-08,12;UBERON:0000369,8.27e-08,5;UBERON:0002435,8.27e-08,5;UBERON:0000204,8.27e-08,5;UBERON:0010082,8.27e-08,5;UBERON:0000025,7.07e-07,114 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0.129123323441576,0,0,0,0,0.513602189793617,0.437102012094987,0,0,0,0,0,0.42438965179803,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.683045484958446,0,0,0,0,0,0,0.219686182734472,0,0,0,0,0,0.672187598284928,0,0,0,1.61853168687678,0,0.633831403506179,0,0,0.449949858640699,0,0,1.19840044207362,0.384218305321555,0.311068836925433,0.270011876663381,0.210324961351382,2.57085885963423,1.10434270475807,0.244981598429908,0.191690942036473,0,2.20231761998777,1.40456071893706,1.84327839907492,1.71452174049252,2.19570344645783,1.56274011167028,1.3959149950069,5.6276261003168,1.06958773443767,2.94628585473668,3.98640706237488,2.79599168737951,0.075726193333184,0.906858721281426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253359865475099,0,0.11418387971906,0,0,0,0.608930956624282,0.230615497256059,0.301445281105245,0.117588707135705,0,0,0,0,0,0,0,0,0.585561594023094,0.83778682725382,0,0,0,0,1.04853447583376,0,0.753926112677186,0.347648640384553,1.53429274398198,0.83115217823824,1.29793010454206,0,0.124406970610093,0,0.210441855886474,0,0,0.180062129805349,0,0.272145996605311,0.12811372028485,0.281105173679186,0,0.431135985865684,0.378212160335639,0.175951124163949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,0.514523061896422,0,0,0,0,0,0,0,0.190225626112559,0,0,0,0.198956472041151,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0.241177159752417,0,0,0,0,0,0,0.312037673114561,0,0,0,0.739012760666419,0,0.162964976442026,0.169745085775188,0.234690248288502,0,0,0,0.315270288212382,0,0,0,0,0.144649058581512,0,0,0,0,0.481651769963376,0.703270119553219,0,0,0.315508219416257,0,0.430846795465598,0.238968797952552,0.445597348164788,0.283076530788832,0,0.292255857911312,0.395287777946524,0.321321316421807,0,0.178065603667255,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0.129358683782755,0.214337035031592,0.532020700926821,0.713475270408282,1.31639216481697,0.608929898229199,0,0,0,0,0,0,0,0,0,0.556275906031529,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0.209088296014469,0,0.134864346384821,0.0826534557253359,0,0,0,0,0,0,0.194451188344048,0,0,0,0,0.209718688851422,0,0,0,0,0,0,0,0,0,0,0,0.0762068066549998,0.100826185136841,0,0,0,0,0,0,0,0,0,0,0,0,1.12950368523413,0.920650473014354,0,1.20297227640581,0.685082519770642,0.755393897389701,0,0,0.906284817968409,1.03552062350364,0.103787347584177,0,0.170733605754134,0.486213434136588,0.419226325255965,0.367687016900028,0.666740183404846,0,0.962757628775446,0.758091635291392,0.25347929989024,0.188626341386076,0.37456602987953,0.128050304809739,0.287177344778066,0,0.347652977834566,0.38581844092741,0.412085900803307,0.147198920134397,0.685738504770831,0,0,0.145346416632329,0.376437521661322,0.761531471025089,0.182927972872773,0.263069711437843,0.407412341537585,0,0.474540072496697,0.197008964751127,0,0.309873682371932,0.192906610981141,0.499621155875892,0.233931608445408,0.214871054048298,0.382576664137687,0.441182838239031,0 | |||
|short_description=p3@Sema4f | |||
}} |
Revision as of 04:00, 6 August 2015
Short description: | p3@Sema4f |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Sema4f_5end |
Coexpression cluster: | MCL_coexpression_mm9:159 |
Association with transcript: | 97bp_to_NM_001113481, NM_011350, uc009clo.2, uc012ent.1, uc012enu.1_5end |
EntrezGene: | 20355 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.10e-37 | 23 |
neuroblast (sensu Vertebrata) | 8.10e-37 | 23 |
neuron | 7.41e-25 | 33 |
neuronal stem cell | 7.41e-25 | 33 |
neuroblast | 7.41e-25 | 33 |
electrically signaling cell | 7.41e-25 | 33 |
neural cell | 4.49e-21 | 43 |
electrically responsive cell | 1.29e-20 | 39 |
electrically active cell | 1.29e-20 | 39 |
ectodermal cell | 1.57e-20 | 44 |
neurectodermal cell | 1.57e-20 | 44 |
neuron of the ventral spinal cord | 1.98e-13 | 3 |
raphe nuclei neuron | 1.03e-12 | 3 |
striatum neuron | 1.03e-12 | 3 |
neuron of the substantia nigra | 2.31e-12 | 3 |
embryonic cell | 8.01e-12 | 70 |
neuron of the dorsal spinal cord | 9.43e-09 | 2 |
somatic stem cell | 2.06e-08 | 91 |
multi fate stem cell | 2.06e-08 | 91 |
stem cell | 1.04e-07 | 97 |