FFCP PHASE1:Mm9::chr6:48845213..48845232,+: Difference between revisions
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{{FFCP|EntrezGene=76507|HGNC=|MCL_coexpression_id=489|UniProt=E9PYN9|association_with_transcript=-20bp_to_ENSMUST00000031835_5end|description=CAGE_peak_4_at_Abp1_5end|id=chr6:48845213..48845232,+|ontology_enrichment_celltype=CL:0002563!4.68e-10!9;CL:0002251!4.68e-10!9;CL:0000239!2.53e-07!6;CL:0000677!2.53e-07!6;CL:0000212!2.53e-07!6;CL:0000584!2.53e-07!6|ontology_enrichment_celltype_v019_2=CL:0002563,3.23e-19,9;CL:0002251,3.23e-19,9;CL:0000239,1.51e-13,6;CL:0000677,1.51e-13,6;CL:0000584,1.51e-13,6;CL:0000075,1.59e-11,7;CL:0000066,2.61e-11,25;CL:0002076,6.57e-11,15;CL:0000682,1.31e-08,3;CL:0000223,8.42e-08,20;CL:0002250,3.05e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!4.50e-20!43;UBERON:0000344!5.49e-17!15;UBERON:0005409!9.71e-16!59;UBERON:0001242!1.01e-14!13;UBERON:0000060!1.01e-14!13;UBERON:0001262!1.01e-14!13;UBERON:0004786!1.01e-14!13;UBERON:0003350!4.68e-10!9;UBERON:0004808!4.68e-10!9;UBERON:0001277!4.68e-10!9;UBERON:0004923!8.29e-10!24;UBERON:0000485!8.99e-08!11|ontology_enrichment_uberon_v019_2=UBERON:0000160,6.28e-62,31;UBERON:0005409,8.55e-42,47;UBERON:0000344,1.11e-33,15;UBERON:0001242,6.05e-29,13;UBERON:0001262,6.05e-29,13;UBERON:0004786,6.05e-29,13;UBERON:0004923,9.30e-20,24;UBERON:0003350,3.23e-19,9;UBERON:0004808,3.23e-19,9;UBERON:0001277,3.23e-19,9;UBERON:0001007,1.21e-15,116;UBERON:0001555,1.21e-15,116;UBERON:0007026,1.21e-15,116;UBERON:0000485,1.93e-15,11;UBERON:0004119,2.90e-15,118;UBERON:0000925,2.90e-15,118;UBERON:0006595,2.90e-15,118;UBERON:0004921,2.09e-13,114;UBERON:0002108,2.77e-11,4;UBERON:0000331,5.76e-09,3;UBERON:0002116,5.76e-09,3;UBERON:0001204,5.76e-09,3;UBERON:0001168,5.76e-09,3|phase1_expression=0,14.6569671208532,9.55498402718026,7.56160528267075,9.01612313903425,7.38668796412315,6.77476657727024,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,12.7993938234725,19.4997888907094,18.3754228516806,17.230479846363,14.6520438226405,30.5937705324762,15.8778981748756,19.5122849376668,0,0,0,8.37669697278696,6.31691652362271,5.10423390655923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.842666520790511,0,0,0,0,0,0,0,0,0,0,2.2836775943812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,31.6865994070808,0,0,19.6701932510615,0,0,0,0,0,0,0,0,0,0,0.101839363850316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284163499395593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.5296828002385,9.25576983322405,0,0,1.28867461322093,4.43703754171354,8.00560957841533,9.89173255785308,10.9141684155238,25.6930369369457,13.8234364840148,22.8799942847323,10.7230247915516,12.5834717211591,16.6426298403515,18.9184209591649,0.379335801906163,0,0,0,0.193952487167626,0.280543279561274,0.252946148497029,0.442830443938806,0.31399745568275,0.123397163921801,0,0,0,0,0,0,0.25462585178142,0,0,0,0,0,0.312037673114561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283880170416537,0,0,0,0,0,0,0,0,0,2.58428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21183207086382,0,0,0,0,0,0,16.6144076879015,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216010681643603,0,0.218362563746178,0.134864346384821,0,0,14.1280320888054,0,0,0,0,0,0,0,0,0.13020438484395,0,0,0,0,0,0,0,0,0,0.120195449519969,0,0.100966449948148,0,0,0.0974578807397524,0.288635524920988,0.116876902181569,0,0,0,0,0,0.750729901804728,0.73260649706906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0.666740183404846,0.412070114477788,0,0,0.50695859978048,0,0.280924522409647,0.640251524048693,0.402048282689293,0,0.463537303779422,0.77163688185482,0.412085900803307,0.147198920134397,0.685738504770831,0.354951612318675,0.476872379894642,0.872078499793971,0.564656282491984,0.592302255241736,0.182927972872773,0.526139422875686,0.407412341537585,0.561142271657738,0.237270036248348,0.197008964751127,0.409231043169689,0.464810523557898,0.192906610981141,0,0,0.429742108096597,0,0,0|short_description=p4@Abp1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:76507 | |||
|HGNC= | |||
|MCL_coexpression_id=489 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E9PYN9 | |||
|association_with_transcript=-20bp_to_ENSMUST00000031835_5end | |||
|cluster_id=chr6:48845213..48845232,+ | |||
|description=CAGE_peak_4_at_Abp1_5end | |||
|id=chr6:48845213..48845232,+ | |||
|ontology_enrichment_celltype=CL:0002563!4.68e-10!9;CL:0002251!4.68e-10!9;CL:0000239!2.53e-07!6;CL:0000677!2.53e-07!6;CL:0000212!2.53e-07!6;CL:0000584!2.53e-07!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,3.23e-19,9;CL:0002251,3.23e-19,9;CL:0000239,1.51e-13,6;CL:0000677,1.51e-13,6;CL:0000584,1.51e-13,6;CL:0000075,1.59e-11,7;CL:0000066,2.61e-11,25;CL:0002076,6.57e-11,15;CL:0000682,1.31e-08,3;CL:0000223,8.42e-08,20;CL:0002250,3.05e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!4.50e-20!43;UBERON:0000344!5.49e-17!15;UBERON:0005409!9.71e-16!59;UBERON:0001242!1.01e-14!13;UBERON:0000060!1.01e-14!13;UBERON:0001262!1.01e-14!13;UBERON:0004786!1.01e-14!13;UBERON:0003350!4.68e-10!9;UBERON:0004808!4.68e-10!9;UBERON:0001277!4.68e-10!9;UBERON:0004923!8.29e-10!24;UBERON:0000485!8.99e-08!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,6.28e-62,31;UBERON:0005409,8.55e-42,47;UBERON:0000344,1.11e-33,15;UBERON:0001242,6.05e-29,13;UBERON:0001262,6.05e-29,13;UBERON:0004786,6.05e-29,13;UBERON:0004923,9.30e-20,24;UBERON:0003350,3.23e-19,9;UBERON:0004808,3.23e-19,9;UBERON:0001277,3.23e-19,9;UBERON:0001007,1.21e-15,116;UBERON:0001555,1.21e-15,116;UBERON:0007026,1.21e-15,116;UBERON:0000485,1.93e-15,11;UBERON:0004119,2.90e-15,118;UBERON:0000925,2.90e-15,118;UBERON:0006595,2.90e-15,118;UBERON:0004921,2.09e-13,114;UBERON:0002108,2.77e-11,4;UBERON:0000331,5.76e-09,3;UBERON:0002116,5.76e-09,3;UBERON:0001204,5.76e-09,3;UBERON:0001168,5.76e-09,3 | |||
|phase1_expression=0,14.6569671208532,9.55498402718026,7.56160528267075,9.01612313903425,7.38668796412315,6.77476657727024,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,12.7993938234725,19.4997888907094,18.3754228516806,17.230479846363,14.6520438226405,30.5937705324762,15.8778981748756,19.5122849376668,0,0,0,8.37669697278696,6.31691652362271,5.10423390655923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.842666520790511,0,0,0,0,0,0,0,0,0,0,2.2836775943812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,31.6865994070808,0,0,19.6701932510615,0,0,0,0,0,0,0,0,0,0,0.101839363850316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284163499395593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.5296828002385,9.25576983322405,0,0,1.28867461322093,4.43703754171354,8.00560957841533,9.89173255785308,10.9141684155238,25.6930369369457,13.8234364840148,22.8799942847323,10.7230247915516,12.5834717211591,16.6426298403515,18.9184209591649,0.379335801906163,0,0,0,0.193952487167626,0.280543279561274,0.252946148497029,0.442830443938806,0.31399745568275,0.123397163921801,0,0,0,0,0,0,0.25462585178142,0,0,0,0,0,0.312037673114561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283880170416537,0,0,0,0,0,0,0,0,0,2.58428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21183207086382,0,0,0,0,0,0,16.6144076879015,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216010681643603,0,0.218362563746178,0.134864346384821,0,0,14.1280320888054,0,0,0,0,0,0,0,0,0.13020438484395,0,0,0,0,0,0,0,0,0,0.120195449519969,0,0.100966449948148,0,0,0.0974578807397524,0.288635524920988,0.116876902181569,0,0,0,0,0,0.750729901804728,0.73260649706906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0.666740183404846,0.412070114477788,0,0,0.50695859978048,0,0.280924522409647,0.640251524048693,0.402048282689293,0,0.463537303779422,0.77163688185482,0.412085900803307,0.147198920134397,0.685738504770831,0.354951612318675,0.476872379894642,0.872078499793971,0.564656282491984,0.592302255241736,0.182927972872773,0.526139422875686,0.407412341537585,0.561142271657738,0.237270036248348,0.197008964751127,0.409231043169689,0.464810523557898,0.192906610981141,0,0,0.429742108096597,0,0,0 | |||
|short_description=p4@Abp1 | |||
}} |
Revision as of 20:47, 5 August 2015
Short description: | p4@Abp1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Abp1_5end |
Coexpression cluster: | MCL_coexpression_mm9:489 |
Association with transcript: | -20bp_to_ENSMUST00000031835_5end |
EntrezGene: | 76507 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 3.23e-19 | 9 |
epithelial cell of alimentary canal | 3.23e-19 | 9 |
brush border epithelial cell | 1.51e-13 | 6 |
gut absorptive cell | 1.51e-13 | 6 |
enterocyte | 1.51e-13 | 6 |
columnar/cuboidal epithelial cell | 1.59e-11 | 7 |
epithelial cell | 2.61e-11 | 25 |
endo-epithelial cell | 6.57e-11 | 15 |
M cell of gut | 1.31e-08 | 3 |
endodermal cell | 8.42e-08 | 20 |
intestinal crypt stem cell | 3.05e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
intestine | 6.28e-62 | 31 |
gastrointestinal system | 8.55e-42 | 47 |
mucosa | 1.11e-33 | 15 |
intestinal mucosa | 6.05e-29 | 13 |
wall of intestine | 6.05e-29 | 13 |
gastrointestinal system mucosa | 6.05e-29 | 13 |
organ component layer | 9.30e-20 | 24 |
epithelium of mucosa | 3.23e-19 | 9 |
gastrointestinal system epithelium | 3.23e-19 | 9 |
intestinal epithelium | 3.23e-19 | 9 |
digestive system | 1.21e-15 | 116 |
digestive tract | 1.21e-15 | 116 |
primitive gut | 1.21e-15 | 116 |
simple columnar epithelium | 1.93e-15 | 11 |
endoderm-derived structure | 2.90e-15 | 118 |
endoderm | 2.90e-15 | 118 |
presumptive endoderm | 2.90e-15 | 118 |
subdivision of digestive tract | 2.09e-13 | 114 |
small intestine | 2.77e-11 | 4 |
ileal mucosa | 5.76e-09 | 3 |
ileum | 5.76e-09 | 3 |
mucosa of small intestine | 5.76e-09 | 3 |
wall of small intestine | 5.76e-09 | 3 |