FFCP PHASE1:Hg19::chr9:116279848..116279866,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5998 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9999 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=200bp_to_ENST00000460000_5end | |||
|coexpression_cluster_id=C8 | |||
|description=CAGE_peak_13_at_RGS3_5end | |||
|id=chr9:116279848..116279866,+ | |||
|ontology_enrichment_celltype=CL:0000838!1.24e-21!52;CL:0000542!5.60e-21!53;CL:0000051!5.60e-21!53;CL:0000738!4.69e-20!140;CL:0002087!2.74e-17!119;CL:0000791!4.46e-17!18;CL:0000789!4.46e-17!18;CL:0002420!4.46e-17!18;CL:0002419!4.46e-17!18;CL:0000790!4.46e-17!18;CL:0000988!6.27e-17!182;CL:0000084!2.54e-15!25;CL:0000827!2.54e-15!25;CL:0002031!7.89e-14!124;CL:0000037!9.10e-14!172;CL:0000566!9.10e-14!172;CL:0000625!1.21e-13!11;CL:0002032!5.49e-11!165;CL:0000837!5.49e-11!165;CL:0000080!1.55e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000625;2.97e-25;11!CL:0000791;2.48e-24;18!CL:0000789;2.48e-24;18!CL:0002419;2.48e-24;18!CL:0000084;1.30e-19;25!CL:0000542;4.28e-12;53!CL:0000669;6.26e-12;4!CL:0000623;9.72e-11;3!CL:0000767;3.18e-10;3!CL:0000226;1.01e-09;3!CL:0000842;1.01e-09;3!CL:0000064;7.30e-09;3!CL:0000067;7.30e-09;3!CL:0005012;7.30e-09;3!CL:0002304;7.30e-09;3!CL:0002087;8.15e-07;104!CL:0000650;8.63e-07;2!CL:1000500;8.63e-07;2!CL:1000618;8.63e-07;2!CL:1001318;8.63e-07;2!CL:0002575;8.63e-07;2!CL:0002173;8.63e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,5.45e-27,52;CL:0000542,2.36e-26,53;CL:0000051,2.36e-26,53;CL:0000625,3.51e-25,11;CL:0000791,2.53e-24,18;CL:0000789,2.53e-24,18;CL:0002420,2.53e-24,18;CL:0002419,2.53e-24,18;CL:0000790,2.53e-24,18;CL:0000084,1.31e-19,25;CL:0000827,1.31e-19,25;CL:0000738,8.44e-19,136;CL:0000988,1.57e-18,177;CL:0002087,1.49e-16,115;CL:0000037,1.78e-13,168;CL:0002031,5.72e-12,120;CL:0000669,8.86e-12,4;CL:0000623,9.75e-11,3;CL:0000825,9.75e-11,3;CL:0002032,1.58e-10,161;CL:0000837,1.58e-10,161;CL:0000767,3.05e-10,3;CL:0000226,1.10e-09,3;CL:0000842,1.10e-09,3;CL:0000064,4.05e-09,3;CL:0000067,4.05e-09,3;CL:0005012,4.05e-09,3;CL:0002304,4.05e-09,3 | |||
|ontology_enrichment_development_v019=CL:0000790;2.48e-24;18!CL:0000051;4.28e-12;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.50e-14!15;UBERON:0000179!1.50e-14!15;UBERON:0000463!1.50e-14!15;UBERON:0002390!4.21e-08!102;UBERON:0003061!4.21e-08!102;UBERON:0004177!7.26e-08!7;UBERON:0002193!5.19e-07!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.45e-21;15!UBERON:0000179;1.45e-21;15!UBERON:0000463;1.45e-21;15!UBERON:0002390;9.88e-16;32!UBERON:0001778;7.30e-09;3!UBERON:0001775;7.30e-09;3!UBERON:0002193;8.31e-09;42!UBERON:0004177;9.24e-09;5!UBERON:0005057;9.24e-09;5!UBERON:0001905;1.21e-07;2!UBERON:0002757;1.21e-07;2!UBERON:0010134;1.21e-07;2!UBERON:0005408;1.21e-07;2!UBERON:0001899;1.21e-07;2!UBERON:0003567;8.63e-07;2!UBERON:0003838;8.63e-07;2!UBERON:0003586;8.63e-07;2!UBERON:0005169;8.63e-07;2!UBERON:0002321;8.63e-07;2!UBERON:0005215;8.63e-07;2!UBERON:0002303;8.63e-07;2!UBERON:0002319;8.63e-07;2!UBERON:0000488;9.57e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.60e-21,15;UBERON:0000179,2.60e-21,15;UBERON:0000463,2.60e-21,15;UBERON:0004177,4.79e-13,7;UBERON:0005057,4.79e-13,7;UBERON:0002370,8.44e-11,4;UBERON:0005058,8.44e-11,4;UBERON:0009113,8.44e-11,4;UBERON:0003295,8.44e-11,4;UBERON:0005562,8.44e-11,4;UBERON:0001778,4.05e-09,3;UBERON:0001775,4.05e-09,3;UBERON:0001905,1.21e-07,2;UBERON:0002757,1.21e-07,2;UBERON:0010134,1.21e-07,2;UBERON:0005408,1.21e-07,2;UBERON:0001899,1.21e-07,2;UBERON:0002390,2.50e-07,98;UBERON:0003061,2.50e-07,98;UBERON:0003351,3.18e-07,6;UBERON:0002193,5.13e-07,108;UBERON:0000488,6.20e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,11.1563572392009,8.12795835554463,10.311112352092,6.68719270643137,12.2825407391108,4.95411594611443,0,0,0,0.154934401160603,0.568676929949686,0,4.9859586767869,4.8130667392834,5.20826089718044,0.223915474239924,0.32389366601898,0,0.145398238779565,0,0.242584061187816,0.232429036905685,0,0,0.28769239232215,0.256160706529101,0,0,0,0,0.188242339542605,0,0,0,0.320929027076094,0,0.329851300186716,0,0.426224750532694,1.16083695451434,0.56738522469114,0,0,0,0,0.605399502633369,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0.889509253863555,0,0,0,0,0,0,0,0,0,6.72610275577843,0,0.196709770113833,1.57204305099666,0.411202997999018,0,0,0,0,0.222820913770347,0.294605907474837,0,0.270803863765016,0.128091319725675,0.260118695119756,2.95988228286617,2.76350017785848,2.60822777161547,0,0,0,0.566546713487831,1.14966148080576,0,0.253019692019503,1.27426165729639,2.60433381542567,0.950452044448374,5.42070428679982,5.11946444617674,1.24930726552346,2.36777252044017,1.64225599384209,14.5156855121807,12.0348088102578,6.66192257860875,0,0,0,0,0,0,0.795285947051099,0.486634870302636,1.98523116044542,2.66075276955077,1.49319135678314,0.261958150995425,0,0,0,0,0,0.715471872916026,0.571994910780128,0.371457501329565,0.39752481473341,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0.560677600142307,0,1.97334038733728,0,0,0,0,0,0.234321431833797,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77236972004421,1.32438929824395,0,0,0,0,0,0,0,0,1.44331342025273,0.231860809950154,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68127715990291,36.2536598771546,29.9722329054729,32.2141021062168,0,0,0,0.167516265334349,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,2.54541504701563,2.05886054286514,2.27444828735176,5.1771408196468,3.52200940751366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451199612907412,0.0770153371044148,0.784349769176855,1.46139224653261,0.633309773357254,0,0,0.863663664408557,0,2.16757150035082,2.50844886927427,0.254876273045038,0,0.895499018888713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170453254832202,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,4.56702848308952,3.0585488285695,0.569647187174163,3.09701308095126,2.46817363851717,4.53931317834902,3.24018862342869,0.79312517629427,0,0,0,0,0,0.782560276832555,0.159426272728822,0.798317485731266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0.293016358543788,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0.19924798825107,1.38141957765574,0.251932747854276,0,1.84627208191604,0,0.0898683511473268,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52581736317083,0.221158519862449,0.295547618953547,0.87754158861589,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.353830258013357,0,1.18608451472249,1.11207545051853,0.313265848516366,0.134802265961354,0,0.702793337176017,0.182454789215666,0,0,0,0,0,0.63186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0967563312890851,0,0,0,0,1.35588444468319,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.134366944973453,0,0,0,0.164831716762333,0,0,2.87889329023667,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0.211200673038813,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.640724475406168,0,0,0,0.592834895693833,0.60896299190448,0,0,0.5013797880454,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0.256241518587947,0,0.303859956177382,0.138258436151731,0,0.132864840313363,0,0.327609848846413,0,0,8.39947062590706,0,0,0,0,0,0.622077260032973,0,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,23.5708807786446,20.1770233331294,0,0,0.0887023701626388,5.41599741512163,0.342976018874837,0,0,0,0,0,0,0,0,0.215927591218621,0,0.214429632529969,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219881033490858,0,0.231522474323834,0.218559560503957,0,0,0,0.196308467114945,0,0,0,0.187967835959707,1.48253142339228,1.09935271517422,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0.23806443146374,1.22718928688412,1.30356900021302,0.112131862580613,0.0636471582781649,0.404234377916439,0,0,1.68380132536469,0,0,0,0,0,0,0,0.366724332548599,0,0,0.402547587182052,3.20568492303233 | |||
|short_description=p13@RGS3 | |||
}} |
Revision as of 02:53, 23 January 2014
Short description: | p13@RGS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_RGS3_5end |
Coexpression cluster: | C8_Natural_CD8_Basophils_CD4_CD14_Peripheral_CD34 |
Association with transcript: | 200bp_to_ENST00000460000_5end |
EntrezGene: | RGS3 |
HGNC: | 9999 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 5.45e-27 | 52 |
lymphocyte | 2.36e-26 | 53 |
common lymphoid progenitor | 2.36e-26 | 53 |
CD8-positive, alpha-beta T cell | 3.51e-25 | 11 |
mature alpha-beta T cell | 2.53e-24 | 18 |
alpha-beta T cell | 2.53e-24 | 18 |
immature T cell | 2.53e-24 | 18 |
mature T cell | 2.53e-24 | 18 |
immature alpha-beta T cell | 2.53e-24 | 18 |
T cell | 1.31e-19 | 25 |
pro-T cell | 1.31e-19 | 25 |
leukocyte | 8.44e-19 | 136 |
hematopoietic cell | 1.57e-18 | 177 |
nongranular leukocyte | 1.49e-16 | 115 |
hematopoietic stem cell | 1.78e-13 | 168 |
hematopoietic lineage restricted progenitor cell | 5.72e-12 | 120 |
pericyte cell | 8.86e-12 | 4 |
natural killer cell | 9.75e-11 | 3 |
pro-NK cell | 9.75e-11 | 3 |
hematopoietic oligopotent progenitor cell | 1.58e-10 | 161 |
hematopoietic multipotent progenitor cell | 1.58e-10 | 161 |
basophil | 3.05e-10 | 3 |
single nucleate cell | 1.10e-09 | 3 |
mononuclear cell | 1.10e-09 | 3 |
ciliated cell | 4.05e-09 | 3 |
ciliated epithelial cell | 4.05e-09 | 3 |
multi-ciliated epithelial cell | 4.05e-09 | 3 |
non-pigmented ciliary epithelial cell | 4.05e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 2.60e-21 | 15 |
haemolymphatic fluid | 2.60e-21 | 15 |
organism substance | 2.60e-21 | 15 |
hemopoietic organ | 4.79e-13 | 7 |
immune organ | 4.79e-13 | 7 |
thymus | 8.44e-11 | 4 |
hemolymphoid system gland | 8.44e-11 | 4 |
thymic region | 8.44e-11 | 4 |
pharyngeal gland | 8.44e-11 | 4 |
thymus primordium | 8.44e-11 | 4 |
ciliary epithelium | 4.05e-09 | 3 |
ciliary body | 4.05e-09 | 3 |
pineal body | 1.21e-07 | 2 |
regional part of epithalamus | 1.21e-07 | 2 |
secretory circumventricular organ | 1.21e-07 | 2 |
circumventricular organ | 1.21e-07 | 2 |
epithalamus | 1.21e-07 | 2 |
hematopoietic system | 2.50e-07 | 98 |
blood island | 2.50e-07 | 98 |
pharyngeal epithelium | 3.18e-07 | 6 |
hemolymphoid system | 5.13e-07 | 108 |
atypical epithelium | 6.20e-07 | 4 |