FFCP PHASE1:Hg19::chr7:116139450..116139510,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=858 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1528 | |||
|TSSclassifier=strong | |||
|UniProt=P51636 | |||
|association_with_transcript=6bp_to_ENST00000222693,uc003vid.2,uc003vie.2_5end | |||
|description=CAGE_peak_5_at_CAV2_5end | |||
|id=chr7:116139450..116139510,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.25e-35!254;CL:0002076!2.77e-14!43;CL:0000220!4.66e-13!246;CL:0002321!1.68e-12!248;CL:0000076!2.65e-11!62;CL:0000223!8.04e-11!59;CL:1000497!2.82e-08!18;CL:0002518!2.82e-08!18;CL:1000449!3.04e-07!16;CL:0002368!4.73e-07!13;CL:0002251!4.99e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.42e-12;42!CL:1000497;6.12e-10;17!CL:0002518;6.12e-10;17!CL:0002251;1.94e-09;20!CL:0000349;3.24e-09;19!CL:1000449;1.83e-08;15!CL:0002368;4.76e-08;13!CL:1000507;1.96e-07;10!CL:1000494;1.96e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.69e-39,253;CL:0002076,2.32e-15,42;CL:0000076,1.37e-11,63;CL:0000223,3.20e-11,58;CL:1000497,5.49e-10,17;CL:0002518,5.49e-10,17;CL:0002251,2.48e-09,20;CL:0000349,2.50e-09,19;CL:1000449,1.76e-08,15;CL:0002368,2.52e-08,13;CL:0002321,7.58e-08,250;CL:1000507,2.65e-07,10;CL:1000494,2.65e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000223;5.07e-07;58 | |||
|ontology_enrichment_disease=DOID:305!6.66e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.08e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.35e-08,106;DOID:1749,1.05e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!8.51e-16!169;UBERON:0000925!8.51e-16!169;UBERON:0006595!8.51e-16!169;UBERON:0000468!3.76e-13!659;UBERON:0003104!3.53e-12!238;UBERON:0009142!3.53e-12!238;UBERON:0000464!9.73e-12!104;UBERON:0002100!1.49e-11!216;UBERON:0000475!1.80e-11!365;UBERON:0000466!5.86e-11!126;UBERON:0001007!8.29e-11!155;UBERON:0001555!8.29e-11!155;UBERON:0007026!8.29e-11!155;UBERON:0000467!2.50e-10!625;UBERON:0001004!3.64e-10!72;UBERON:0000480!3.96e-10!626;UBERON:0000064!4.97e-10!219;UBERON:0003102!2.45e-09!95;UBERON:0000481!2.82e-09!347;UBERON:0000077!8.75e-09!130;UBERON:0006554!1.23e-08!44;UBERON:0009569!1.72e-08!113;UBERON:0005631!3.44e-08!14;UBERON:0000158!3.44e-08!14;UBERON:0004923!3.76e-08!57;UBERON:0002553!3.99e-08!70;UBERON:0001008!4.35e-08!45;UBERON:0000483!4.76e-08!309;UBERON:0005911!5.04e-08!82;UBERON:0000119!6.60e-08!312;UBERON:0000065!6.96e-08!53;UBERON:0000058!7.77e-08!26;UBERON:0003886!1.69e-07!63;UBERON:0004921!2.39e-07!129;UBERON:0004185!2.39e-07!129;UBERON:0004211!3.04e-07!16;UBERON:0001285!3.04e-07!16;UBERON:0007684!3.04e-07!16;UBERON:0003220!3.04e-07!16;UBERON:0004208!3.04e-07!16;UBERON:0003914!3.80e-07!118;UBERON:0006555!4.34e-07!17;UBERON:0005103!4.34e-07!17;UBERON:0000083!4.34e-07!17;UBERON:0009201!4.34e-07!17;UBERON:0004819!4.34e-07!17;UBERON:0006553!4.34e-07!17;UBERON:0003074!4.34e-07!17;UBERON:0003060!4.34e-07!17;UBERON:0000477!6.30e-07!286;UBERON:0005256!6.39e-07!143;UBERON:0002050!6.48e-07!605;UBERON:0005423!6.48e-07!605;UBERON:0000080!7.29e-07!18;UBERON:0002120!7.29e-07!18;UBERON:0004875!7.29e-07!18;UBERON:0005721!7.29e-07!18;UBERON:0005754!7.29e-07!18;UBERON:0007297!7.29e-07!18;UBERON:0003064!8.37e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;9.37e-09;30!UBERON:0001008;9.37e-09;30!UBERON:0005631;1.73e-08;10!UBERON:0000158;1.73e-08;10!UBERON:0006555;1.83e-08;15!UBERON:0004819;1.83e-08;15!UBERON:0001285;1.83e-08;15!UBERON:0007684;1.83e-08;15!UBERON:0005910;1.85e-07;6!UBERON:0004211;1.96e-07;10!UBERON:0009773;1.96e-07;10!UBERON:0001231;1.96e-07;10!UBERON:0004810;1.96e-07;10!UBERON:0000478;4.08e-07;24!UBERON:0000486;6.01e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,6.74e-12,160;UBERON:0000925,6.74e-12,160;UBERON:0006595,6.74e-12,160;UBERON:0005631,1.10e-10,14;UBERON:0000158,1.10e-10,14;UBERON:0006554,2.27e-09,47;UBERON:0001008,5.49e-09,48;UBERON:0004211,1.76e-08,15;UBERON:0009773,1.76e-08,15;UBERON:0001231,1.76e-08,15;UBERON:0001285,1.76e-08,15;UBERON:0007684,1.76e-08,15;UBERON:0004208,1.76e-08,15;UBERON:0001004,2.66e-08,74;UBERON:0006555,1.06e-07,16;UBERON:0004819,1.06e-07,16;UBERON:0005911,1.67e-07,82;UBERON:0000065,1.82e-07,54;UBERON:0004923,1.83e-07,66;UBERON:0005910,2.01e-07,6;UBERON:0004810,2.65e-07,10;UBERON:0000478,4.21e-07,24;UBERON:0001007,5.10e-07,145;UBERON:0001555,5.10e-07,145;UBERON:0007026,5.10e-07,145;UBERON:0009569,8.27e-07,112 | |||
|phase1_expression=2.36181893051724,1.71280419112787,2.11431606143957,2.00146596706261,1.34088328328186,0,2.53299878168311,0.631719873426831,1.56711376919903,1.96587149201207,2.09340350391728,9.61142037372758,6.59417445571134,0.123766352960047,0.662794751455832,1.34465029290355,1.20538905604795,0,1.95173119516203,0.738726348460727,0.204000691244253,0.313454721478088,0,0.410623275218653,0.251085279189606,0,0.0821005894499457,0,0,0,0,0.919421224478927,3.31326510656075,2.9580320813343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511450247374121,1.0843174571537,0,0.579386075843295,0,0,1.22895262313288,0.443458794925128,0.614843499851882,0.458426764241994,2.91436230634034,3.70784442784429,0,0,0,0,0,0,0.993812036833525,0,2.08284300964557,1.69592382577203,0.838998872419812,1.6507082516404,0.835979866147242,2.06733407335463,1.77883131343355,2.00832367658802,2.41697590265488,2.28081631715554,3.90499292077071,0.735326160691737,1.62028389576352,1.51809538082936,0.44905874525234,0.337834441449967,1.53316637465883,0,1.28241220751285,0,0,3.48875241714027,0,1.13967460498122,0.397227542439656,0.286836620748814,1.06400514659507,0,0,1.48000529050296,0.933633106199299,0.404132016209064,0.653847612453835,0.151357427644931,0,0,1.5608003841516,1.71141546463335,0.896692083310806,1.52664848236894,0.323745888736263,0.842704840213491,0.408308342509787,0.245668634623536,0.413303124703062,0,0.494533858557114,0,0,0.168336113954066,0,1.38532057742091,1.31693286264251,0.919463387397059,0.600952235626387,1.36118619792025,0.179389635688862,0.640672166455702,0.423863802319124,1.50045548042201,0.721367704669072,1.03056216018252,1.11670113798954,0.675105328965065,0.974370051611986,0.504867548488229,0.460249493211497,0.161646056818812,1.42003837006646,1.10827308050404,0.67824236924195,7.73043412653187,5.72766853240753,5.73609190778008,0,0,0.116193942869518,0.207322110030741,0,0,0,0.643240938192885,0,0.928735856063958,0,1.8929088006375,2.36018566109342,1.44606617930089,1.54411561825352,1.52515610864684,1.18635309555548,1.75280700608214,0.784885860501384,1.15424147083917,0.738155454624648,0,2.057870056657,0,1.26755034821831,0,0.590789906681404,0,1.72183813960359,2.23038153388083,12.2920319657661,1.1240175325762,7.03702806881416,7.87001783847502,0,1.03993478527958,1.44331342025273,0.579652024875384,0.939269553886573,1.44366447761074,3.70388410061289,2.28304982681518,1.58040879591855,0.858486162094873,0,0,0,13.1227367581488,8.56708853814184,5.52922879245307,13.0755443146159,4.94077695473735,4.60059214998253,0,0,0,0.144119953416961,0,0.253991577168676,0,0,0,0.102827492703324,0,1.14330573052231,0.448524337381443,0,0.4400297149257,0,3.57656445851882,2.535908257668,0.531876233169741,2.08014873822732,0.257207374262142,1.41849132023278,0.799266537048298,0.714889968290738,0,0.823240336780769,1.62868092146868,0.710783897485092,1.58390374586686,1.50719688529793,0.871533458600294,2.99918973546171,0,0,0,1.91699884393266,2.29723871668228,0,0.723906533337896,0.61642896765115,1.61154866915906,0,0,0,0,0.254094624222463,0,0.773288812777695,0,0,0,0,0,0.12269149171914,0,0.542530047399471,1.66376689224646,1.07057393278297,1.26161932027148,0.35142424497814,0.601892199455438,0,0,0,0.368738337083406,0.695068915744663,0,0.343143423810856,0,0,0,3.33440328590885,3.32870879020994,2.72151263996712,1.73675465473144,0.920771839728375,3.36792113319688,1.15325234330131,0.511707249066704,1.12597744800525,1.48418066444991,0.771048469013278,0.532685175939381,0.98552587216571,0.519254429183621,0.697262270759755,0.483437798366489,9.62431057455767,6.81399318125633,0.34444334449382,0.364182336013434,0.262248829918848,2.25599806453706,5.2370429231002,3.13739907670742,2.92278449306521,3.27210049567915,2.27466768141793,0.680374821106063,1.94324324491925,1.54227252690289,0.541892875087706,5.01689773854853,3.05851527654046,5.81753206250107,2.0148727924996,0,0,0.512900250232778,0,0,0.412164046590889,0.183138929636687,0,1.14853107599234,4.55042172225565,0,0.290012154876366,1.54048617114644,0.460511024178389,0.964856007391714,0.429680979473094,0.580066775656914,1.10794615640931,0.0890320356467374,8.76010051413184,4.99694175149276,4.33883222481586,4.4509423576442,0.464845549297286,0.62962469366128,1.3940745403212,1.23213432070436,0.532306030317022,0.869932992075073,0.55597265731176,0.429374660225974,0.372158369359667,0.316379424718726,0.38126038784765,0.767693373934002,0.855877976067841,0,1.56989728039846,0.539617372749944,0.274537029736055,0.706874414074119,0.202182481573316,0,0.421258456238981,1.46290121726877,0.731140468893853,0,0.272999822815972,0.424216295861138,2.26016233240486,0,0,0.438450885253763,0.578775534266688,0,0.608731130888112,0.6196469961995,0.281695602532241,0.430234056612155,1.17898849215745,0,0.709522128141196,0.633322905892992,0.329294892959902,0.379473173765715,0,5.09977197445214,2.68120910214315,4.3556393944529,0.4707190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| |||
|short_description=p5@CAV2 | |||
}} |
Revision as of 18:55, 22 January 2014
Short description: | p5@CAV2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_CAV2_5end |
Coexpression cluster: | NA |
Association with transcript: | 6bp_to_ENST00000222693, uc003vid.2, uc003vie.2_5end |
EntrezGene: | CAV2 |
HGNC: | 1528 |
UniProt: | P51636 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.69e-39 | 253 |
endo-epithelial cell | 2.32e-15 | 42 |
squamous epithelial cell | 1.37e-11 | 63 |
endodermal cell | 3.20e-11 | 58 |
kidney cell | 5.49e-10 | 17 |
kidney epithelial cell | 5.49e-10 | 17 |
epithelial cell of alimentary canal | 2.48e-09 | 20 |
extraembryonic cell | 2.50e-09 | 19 |
epithelial cell of nephron | 1.76e-08 | 15 |
respiratory epithelial cell | 2.52e-08 | 13 |
embryonic cell | 7.58e-08 | 250 |
kidney tubule cell | 2.65e-07 | 10 |
nephron tubule epithelial cell | 2.65e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 6.74e-12 | 160 |
endoderm | 6.74e-12 | 160 |
presumptive endoderm | 6.74e-12 | 160 |
extraembryonic membrane | 1.10e-10 | 14 |
membranous layer | 1.10e-10 | 14 |
urinary system structure | 2.27e-09 | 47 |
renal system | 5.49e-09 | 48 |
nephron epithelium | 1.76e-08 | 15 |
renal tubule | 1.76e-08 | 15 |
nephron tubule | 1.76e-08 | 15 |
nephron | 1.76e-08 | 15 |
uriniferous tubule | 1.76e-08 | 15 |
nephrogenic mesenchyme | 1.76e-08 | 15 |
respiratory system | 2.66e-08 | 74 |
excretory tube | 1.06e-07 | 16 |
kidney epithelium | 1.06e-07 | 16 |
endo-epithelium | 1.67e-07 | 82 |
respiratory tract | 1.82e-07 | 54 |
organ component layer | 1.83e-07 | 66 |
transitional epithelium | 2.01e-07 | 6 |
nephron tubule epithelium | 2.65e-07 | 10 |
extraembryonic structure | 4.21e-07 | 24 |
digestive system | 5.10e-07 | 145 |
digestive tract | 5.10e-07 | 145 |
primitive gut | 5.10e-07 | 145 |
subdivision of trunk | 8.27e-07 | 112 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.35e-08 | 106 |
squamous cell carcinoma | 1.05e-07 | 14 |