FFCP PHASE1:Hg19::chr6:123958371..123958380,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=10345 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12261 | |||
|TSSclassifier=not | |||
|UniProt=Q5SWK9,Q13061,Q8IVK2 | |||
|association_with_transcript=-133bp_to_ENST00000334268,NM_001251987,NM_006073_5end | |||
|coexpression_cluster_id=C72 | |||
|description=CAGE_peak_12_at_TRDN_5end | |||
|id=chr6:123958371..123958380,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003104;3.39e-10;31 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000341!5.37e-19!2;UBERON:0001630!6.43e-19!2;UBERON:0005090!6.43e-19!2;UBERON:0001723!9.95e-13!3;UBERON:0001033!9.95e-13!3;UBERON:0010056!9.95e-13!3;UBERON:0007023!1.74e-10!115;UBERON:0005418!1.98e-10!1;UBERON:0001389!1.98e-10!1;UBERON:0000026!1.98e-10!1;UBERON:0008784!1.98e-10!1;UBERON:0006058!1.98e-10!1;UBERON:0003663!1.98e-10!1;UBERON:0001383!1.98e-10!1;UBERON:0004256!1.98e-10!1;UBERON:0002529!1.98e-10!1;UBERON:0004708!1.98e-10!1;UBERON:0002101!1.98e-10!1;UBERON:0004709!1.98e-10!1;UBERON:0003661!1.98e-10!1;UBERON:0002471!1.98e-10!1;UBERON:0004357!1.98e-10!1;UBERON:0009872!1.98e-10!1;UBERON:0004347!1.98e-10!1;UBERON:0005420!1.98e-10!1;UBERON:0005732!1.98e-10!1;UBERON:0006057!1.98e-10!1;UBERON:0000978!1.98e-10!1;UBERON:0002103!1.98e-10!1;UBERON:0001665!1.98e-10!1;UBERON:0003823!1.98e-10!1;UBERON:0000154!1.98e-10!1;UBERON:0005733!1.98e-10!1;UBERON:0005730!1.98e-10!1;UBERON:0000989!2.84e-10!1;UBERON:0008811!2.84e-10!1;UBERON:0006258!2.84e-10!1;UBERON:0005876!2.84e-10!1;UBERON:0004874!2.84e-10!1;UBERON:0002426!3.10e-10!1;UBERON:0003831!3.10e-10!1;UBERON:0003898!3.10e-10!1;UBERON:0004830!3.10e-10!1;UBERON:0001774!3.10e-10!1;UBERON:0003830!3.10e-10!1;UBERON:0005175!3.10e-10!1;UBERON:0003897!3.10e-10!1;UBERON:0001103!3.10e-10!1;UBERON:0010084!3.10e-10!1;UBERON:0002084!3.71e-10!1;UBERON:0002082!3.71e-10!1;UBERON:0004706!3.71e-10!1;UBERON:0007029!4.44e-10!1;UBERON:0001301!6.33e-10!1;UBERON:0002372!1.07e-09!1;UBERON:0001961!1.07e-09!1;UBERON:0001744!1.07e-09!1;UBERON:0001735!1.07e-09!1;UBERON:0002022!1.17e-09!1;UBERON:0001042!2.34e-08!10;UBERON:0009145!2.34e-08!10;UBERON:0006562!1.22e-07!11;UBERON:0003103!5.26e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0000341;7.72e-66;2!UBERON:0001389;3.61e-34;1!UBERON:0000026;3.61e-34;1!UBERON:0008784;3.61e-34;1!UBERON:0006058;3.61e-34;1!UBERON:0003663;3.61e-34;1!UBERON:0004256;3.61e-34;1!UBERON:0004708;3.61e-34;1!UBERON:0002101;3.61e-34;1!UBERON:0004709;3.61e-34;1!UBERON:0002529;3.61e-34;1!UBERON:0010538;3.61e-34;1!UBERON:0003661;3.61e-34;1!UBERON:0010890;3.61e-34;1!UBERON:0002471;3.61e-34;1!UBERON:0001383;3.61e-34;1!UBERON:0010758;3.61e-34;1!UBERON:0010707;3.61e-34;1!UBERON:0000978;3.61e-34;1!UBERON:0002103;3.61e-34;1!UBERON:0001665;3.61e-34;1!UBERON:0003823;3.61e-34;1!UBERON:0000154;3.61e-34;1!UBERON:0010709;3.61e-34;1!UBERON:0000974;8.47e-23;6!UBERON:0001134;2.06e-19;16!UBERON:0002036;2.06e-19;16!UBERON:0005090;7.67e-18;2!UBERON:0001630;7.67e-18;2!UBERON:0001723;2.89e-12;3!UBERON:0001033;2.89e-12;3!UBERON:0002385;9.89e-11;31!UBERON:0001015;9.89e-11;31!UBERON:0000383;9.89e-11;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000341,5.53e-66,2;UBERON:0005418,3.61e-34,1;UBERON:0001389,3.61e-34,1;UBERON:0000026,3.61e-34,1;UBERON:0008784,3.61e-34,1;UBERON:0006058,3.61e-34,1;UBERON:0003663,3.61e-34,1;UBERON:0004256,3.61e-34,1;UBERON:0004708,3.61e-34,1;UBERON:0002101,3.61e-34,1;UBERON:0004709,3.61e-34,1;UBERON:0002529,3.61e-34,1;UBERON:0010538,3.61e-34,1;UBERON:0003661,3.61e-34,1;UBERON:0010890,3.61e-34,1;UBERON:0002471,3.61e-34,1;UBERON:0001383,3.61e-34,1;UBERON:0004357,3.61e-34,1;UBERON:0004347,3.61e-34,1;UBERON:0005420,3.61e-34,1;UBERON:0005732,3.61e-34,1;UBERON:0010758,3.61e-34,1;UBERON:0010707,3.61e-34,1;UBERON:0000978,3.61e-34,1;UBERON:0002103,3.61e-34,1;UBERON:0001665,3.61e-34,1;UBERON:0003823,3.61e-34,1;UBERON:0000154,3.61e-34,1;UBERON:0010709,3.61e-34,1;UBERON:0005733,3.61e-34,1;UBERON:0005730,3.61e-34,1;UBERON:0005090,7.67e-18,2;UBERON:0001630,7.67e-18,2;UBERON:0000974,3.71e-14,10;UBERON:0001723,3.24e-12,3;UBERON:0001033,3.24e-12,3;UBERON:0010056,3.24e-12,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0.677942222341597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.403100834920358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0.662091970365432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0.992422356778588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.23714418593947,5.13314034281235,4.6392577253528,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49263787330687,1.42838658878244,0,0,0,0,0,0.435433495793923,1.02669990325584,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p12@TRDN | |||
}} |
Revision as of 13:42, 22 January 2014
Short description: | p12@TRDN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | No |
Description: | CAGE_peak_12_at_TRDN_5end |
Coexpression cluster: | C72_skeletal_tongue_throat_heart_diaphragm_penis_left |
Association with transcript: | -133bp_to_ENST00000334268, NM_001251987, NM_006073_5end |
EntrezGene: | TRDN |
HGNC: | 12261 |
UniProt: | Q5SWK9Q13061Q8IVK2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
throat | 5.53e-66 | 2 |
hindlimb bud | 3.61e-34 | 1 |
soleus muscle | 3.61e-34 | 1 |
appendage | 3.61e-34 | 1 |
lower limb segment | 3.61e-34 | 1 |
multi-limb segment region | 3.61e-34 | 1 |
hindlimb muscle | 3.61e-34 | 1 |
hindlimb zeugopod muscle | 3.61e-34 | 1 |
paired limb/fin | 3.61e-34 | 1 |
limb | 3.61e-34 | 1 |
pelvic appendage | 3.61e-34 | 1 |
limb segment | 3.61e-34 | 1 |
paired limb/fin segment | 3.61e-34 | 1 |
limb muscle | 3.61e-34 | 1 |
pelvic complex muscle | 3.61e-34 | 1 |
zeugopod | 3.61e-34 | 1 |
muscle of leg | 3.61e-34 | 1 |
paired limb/fin bud | 3.61e-34 | 1 |
limb bud | 3.61e-34 | 1 |
pelvic appendage bud | 3.61e-34 | 1 |
limb/fin field | 3.61e-34 | 1 |
subdivision of organism along appendicular axis | 3.61e-34 | 1 |
appendage girdle complex | 3.61e-34 | 1 |
leg | 3.61e-34 | 1 |
hindlimb | 3.61e-34 | 1 |
triceps surae | 3.61e-34 | 1 |
hindlimb zeugopod | 3.61e-34 | 1 |
posterior region of body | 3.61e-34 | 1 |
pelvic complex | 3.61e-34 | 1 |
limb field | 3.61e-34 | 1 |
hindlimb/pelvic fin field | 3.61e-34 | 1 |
muscle structure | 7.67e-18 | 2 |
muscle organ | 7.67e-18 | 2 |
neck | 3.71e-14 | 10 |
tongue | 3.24e-12 | 3 |
gustatory system | 3.24e-12 | 3 |
future tongue | 3.24e-12 | 3 |