FFCP PHASE1:Hg19::chr4:83812268..83812401,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22872 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17052 | |||
|TSSclassifier=strong | |||
|UniProt=O94979,B7ZL00,D6RAB3,D6RHE8,D6RHZ5,B4DIW6 | |||
|association_with_transcript=0bp_to_ENST00000311785,ENST00000326950,ENST00000348405,ENST00000432794,ENST00000436790,ENST00000443462,ENST00000448323,ENST00000503058,ENST00000505984,ENST00000506497,ENST00000507340,ENST00000507816,ENST00000507867,ENST00000508479,ENST00000508502,ENST00000509142,ENST00000511975,ENST00000513858,NM_001191049,uc003hnf.2,uc003hng.2,uc003hnh.2,uc003hni.2,uc003hnj.2,uc003hnk.2,uc003hnl.2,uc003hnn.1,uc003hno.2,uc011ccl.1,uc011ccm.1,uc011ccn.1_5end | |||
|coexpression_cluster_id=C1465 | |||
|description=CAGE_peak_1_at_SEC31A_5end | |||
|id=chr4:83812268..83812401,- | |||
|ontology_enrichment_celltype=CL:0000055!5.43e-24!180;CL:0000057!2.30e-16!75;CL:0000680!4.71e-16!57;CL:0000056!4.71e-16!57;CL:0000355!4.71e-16!57;CL:0000187!4.50e-15!54;CL:0000048!7.50e-15!430;CL:0000723!2.27e-14!436;CL:0000034!4.20e-13!444;CL:0000359!1.26e-12!32;CL:0000192!1.38e-12!42;CL:0000514!1.38e-12!42;CL:0000183!1.89e-11!59;CL:0002371!2.59e-11!591;CL:0000393!3.62e-11!60;CL:0000211!3.62e-11!60;CL:0000144!5.23e-11!625;CL:0000222!6.36e-11!119;CL:0002620!2.27e-10!23 | |||
|ontology_enrichment_celltype_v019=CL:0000359;7.51e-12;32!CL:0002620;2.23e-10;23!CL:0000192;1.75e-09;43!CL:0000134;1.46e-08;55!CL:0000187;2.80e-08;55!CL:0000723;7.27e-08;61!CL:0000048;9.55e-08;58!CL:0000057;2.30e-07;73!CL:0000393;5.58e-07;61!CL:0000211;5.58e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,9.49e-17,76;CL:0000048,2.34e-16,427;CL:0000680,2.38e-16,58;CL:0000056,2.38e-16,58;CL:0000355,2.38e-16,58;CL:0000723,7.58e-16,433;CL:0000187,2.28e-15,55;CL:0000034,1.67e-14,441;CL:0000192,7.08e-13,43;CL:0000514,7.08e-13,43;CL:0000359,1.26e-12,32;CL:0000393,1.91e-11,61;CL:0000211,1.91e-11,61;CL:0000222,6.64e-11,121;CL:0002620,2.27e-10,23 | |||
|ontology_enrichment_development_v019=CL:0000514;1.75e-09;43!CL:0000355;1.74e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.92e-20!83;UBERON:0002329!1.92e-20!83;UBERON:0003077!1.92e-20!83;UBERON:0003059!1.92e-20!83;UBERON:0007282!1.92e-20!83;UBERON:0009618!1.92e-20!83;UBERON:0007285!1.92e-20!83;UBERON:0004290!2.60e-17!70;UBERON:0004872!8.46e-16!84;UBERON:0002385!2.23e-15!63;UBERON:0001015!2.23e-15!63;UBERON:0000383!2.23e-15!63;UBERON:0001134!3.46e-15!61;UBERON:0002036!3.46e-15!61;UBERON:0003082!3.46e-15!61;UBERON:0000486!1.04e-14!82;UBERON:0001637!3.78e-13!42;UBERON:0003509!3.78e-13!42;UBERON:0004572!3.78e-13!42;UBERON:0002049!6.07e-13!79;UBERON:0007798!6.07e-13!79;UBERON:0001981!2.22e-12!60;UBERON:0007500!2.22e-12!60;UBERON:0004537!2.22e-12!60;UBERON:0006965!2.22e-12!60;UBERON:0000055!7.85e-12!69;UBERON:0000490!9.28e-12!138;UBERON:0005256!2.35e-11!143;UBERON:0004573!4.24e-11!33;UBERON:0004571!4.24e-11!33;UBERON:0004535!1.56e-10!110;UBERON:0001009!4.33e-10!113;UBERON:0002199!5.89e-09!45;UBERON:0002416!5.89e-09!45;UBERON:0003102!6.80e-09!95;UBERON:0002097!5.87e-08!40;UBERON:0003914!6.32e-08!118;UBERON:0000947!4.64e-07!21;UBERON:0010191!4.64e-07!21;UBERON:0002100!6.69e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;4.19e-10;33!UBERON:0004571;4.19e-10;33!UBERON:0001637;1.56e-09;42!UBERON:0003509;1.56e-09;42!UBERON:0004572;1.56e-09;42!UBERON:0002385;1.79e-07;31!UBERON:0001015;1.79e-07;31!UBERON:0000383;1.79e-07;31!UBERON:0007500;2.37e-07;56!UBERON:0001981;2.37e-07;56!UBERON:0004537;2.37e-07;56!UBERON:0000947;4.73e-07;21!UBERON:0010191;4.73e-07;21!UBERON:0002097;8.07e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,1.30e-17,71;UBERON:0003059,1.30e-17,71;UBERON:0007282,1.30e-17,71;UBERON:0004290,1.30e-17,71;UBERON:0009618,1.30e-17,71;UBERON:0007524,2.39e-17,73;UBERON:0003077,6.98e-17,72;UBERON:0007285,6.98e-17,72;UBERON:0002385,1.13e-15,64;UBERON:0001015,1.13e-15,64;UBERON:0000383,1.13e-15,64;UBERON:0001134,1.76e-15,62;UBERON:0002036,1.76e-15,62;UBERON:0003082,1.76e-15,62;UBERON:0004872,1.99e-15,83;UBERON:0000486,5.39e-15,83;UBERON:0000490,6.58e-14,148;UBERON:0001637,3.78e-13,42;UBERON:0003509,3.78e-13,42;UBERON:0004572,3.78e-13,42;UBERON:0007503,6.10e-13,78;UBERON:0002049,1.37e-12,78;UBERON:0007798,1.37e-12,78;UBERON:0007500,5.17e-12,59;UBERON:0001981,5.17e-12,59;UBERON:0004537,5.17e-12,59;UBERON:0006965,5.17e-12,59;UBERON:0005256,1.27e-11,122;UBERON:0000055,1.76e-11,68;UBERON:0004573,4.24e-11,33;UBERON:0004571,4.24e-11,33;UBERON:0000926,2.64e-10,315;UBERON:0004120,2.64e-10,315;UBERON:0006603,2.64e-10,315;UBERON:0004535,3.10e-10,109;UBERON:0003104,3.19e-10,160;UBERON:0009142,3.19e-10,160;UBERON:0003102,8.23e-10,99;UBERON:0001009,8.48e-10,112;UBERON:0002199,2.05e-09,46;UBERON:0002416,2.05e-09,46;UBERON:0002097,2.06e-08,41;UBERON:0003914,1.02e-07,117;UBERON:0002204,1.60e-07,167;UBERON:0000947,4.64e-07,21;UBERON:0010191,4.64e-07,21;UBERON:0004923,8.78e-07,66 | |||
|phase1_expression=172.412781927758,137.23843581412,170.977692168413,138.10115172732,117.997728928804,136.084809759658,83.5889597955425,150.981049749013,98.2057962031393,33.9112832372082,18.1428303672831,71.2118873144362,49.3244249287208,156.935735553339,137.198513551357,131.775728704548,126.565850885035,126.343645637016,121.983199697627,49.371544288792,36.7201244239655,26.6436513256375,65.834277040143,52.6966536530604,74.3212426401233,51.731875691363,54.514791394764,53.7594636372429,57.0378201430911,71.0084386479843,59.139759106741,33.0991640812414,46.3857114918505,54.3538394945178,38.7336002901508,41.2290774213522,43.1592645822225,79.2213434200585,80.4183234355268,71.830598206947,56.202784034221,56.0336042212835,61.5605606645706,39.402922709262,45.7229891863459,40.9967063407409,47.183094491854,55.0964969949247,47.3850747469508,35.6738566479467,39.4487488054815,57.2286996330376,62.398968213328,58.7391062061282,63.6504486993406,38.0249525876062,59.4935407126104,59.7764468623925,68.8688757834531,76.7020374711864,79.9171407248802,34.6343865196052,40.4911224971913,40.9175760511386,48.4649428509735,43.1212770765266,68.5104473895132,37.4360511232547,43.2830822288767,46.9127904563052,55.0913547396366,58.9244217580103,60.7607783886498,60.2077565989034,56.1275351907715,54.7209064776861,62.6793761797443,52.1113818160027,74.0944954673539,46.1720644860823,42.7670855978044,52.9726045917438,43.9990611153307,43.6910889009705,42.6964441854506,40.9661013663847,42.4419746258173,40.2326707968138,46.9341859677252,38.1621501814146,50.6599542507409,54.6130586114973,52.3714322531564,72.6942307184642,70.6240789356735,39.7709968010366,53.5050574709626,47.5543022926489,57.7740212188621,38.1185209490746,43.9995059955347,38.8227200702481,46.7584148178987,45.6782873229212,39.4771916016282,36.1100248171302,55.7855959355932,28.8205469382769,31.2142434143708,42.5894172923521,43.3869527923782,53.6135708609847,49.5277120961282,50.0301348527763,40.7688542839409,42.7176221969825,45.9864592322306,38.8299013395372,72.8696713016168,44.5991580053735,41.0182575929544,36.1171776890382,47.5817376285762,59.5137741868046,47.4736760898914,49.0128911731115,38.5930158552892,59.6755959945208,47.3369146536808,56.0470443026432,97.5227465255847,123.408958185469,130.675538204088,150.720126544364,146.892007816316,124.133466749426,236.995212221228,150.856809793817,94.3457475297397,102.660711025167,102.327525332492,58.8750944362218,20.4005361443824,28.9211865371855,46.4102772926197,43.7065640621161,52.252478483914,95.6347403464421,80.0792875092179,98.4362378523347,105.54283831172,102.367916817629,68.7338193183037,97.2329660109297,99.8408658179576,90.5138357982822,116.410196361003,115.253874589521,144.085336388118,166.356144544041,88.6224497640123,127.72571376071,61.9917626172351,111.401913344798,98.8373176415747,102.158889156987,69.1550467688603,66.6659964461268,81.2578178569181,116.75967612688,82.6239865126137,96.1997047283262,81.4338554711483,29.2183014935498,152.073417218767,152.463136044154,327.712722512717,221.724707838833,115.267224214466,122.788394431165,178.270822868607,106.313713367796,177.079079142467,110.462751097144,105.923313217521,126.080737228228,149.22956444032,32.1020361612301,109.256026890612,112.382948844257,101.176756733569,105.691048779388,95.8287830659339,105.619006640091,171.693658025365,105.391844253497,131.017090530871,160.380385733077,132.040540234749,45.5080680969013,21.5585442544872,130.797160542309,103.22277889437,178.429290371814,144.862614890677,140.371410475951,111.025925531975,110.709810764181,330.97387784595,226.797946925319,197.732463781871,255.377522767826,221.769042921121,445.975774818984,256.655144881262,297.721450073594,230.243643195912,381.427432882857,211.530667080004,275.283234762437,370.630014587345,214.299712930191,180.412470218359,81.362819181748,117.826324095241,74.569194801141,38.299743724693,36.313156520087,45.0832498333731,59.9160897988841,38.1004484822199,46.3521246026304,186.174943472481,167.24264393015,114.651984722559,191.783954277207,178.304231972388,35.4920400119532,35.9085389866357,40.007830960658,33.4190737379154,34.860711054785,34.6415103902201,33.5729957318809,40.4216218158213,38.0899685376926,29.5262181849859,40.6701144029993,62.5592497223728,47.0427876433734,101.404027857465,74.6948684674996,92.163225442299,26.487785964879,82.279265385343,141.543443496284,101.080012861344,69.6890870197241,48.2539067575828,88.7923189070299,30.6259806991705,38.4775870553444,88.0421186354167,80.3397706477282,168.481476228404,103.077643701407,52.317362921157,65.4474283687018,32.3983803163303,30.9055018354154,55.152609363577,65.2871899738473,50.2373328535901,85.297788927967,156.223379224939,109.87570036285,67.2584505498391,63.6488325345577,62.8747593830946,620.263016510993,97.9098586227074,105.944667041335,112.701803572064,94.8080675032113,53.719218571175,62.6461017915575,69.1582938539277,61.5860805681739,51.0024363808485,47.454203139339,62.8818151787272,83.4255267529484,91.1156543861555,121.374863033672,177.619337451187,3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| |||
|short_description=p1@SEC31A | |||
}} |
Revision as of 01:59, 22 January 2014
Short description: | p1@SEC31A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SEC31A_5end |
Coexpression cluster: | C1465_Mast_Preadipocyte_Fibroblast_Smooth_Chondrocyte_basal_Osteoblast |
Association with transcript: | 0bp_to_ENST00000311785, ENST00000326950, ENST00000348405, ENST00000432794, ENST00000436790, ENST00000443462, ENST00000448323, ENST00000503058, ENST00000505984, ENST00000506497, ENST00000507340, ENST00000507816, ENST00000507867, ENST00000508479, ENST00000508502, ENST00000509142, ENST00000511975, ENST00000513858, NM_001191049, uc003hnf.2, uc003hng.2, uc003hnh.2, uc003hni.2, uc003hnj.2, uc003hnk.2, uc003hnl.2, uc003hnn.1, uc003hno.2, uc011ccl.1, uc011ccm.1, uc011ccn.1_5end |
EntrezGene: | SEC31A |
HGNC: | 17052 |
UniProt: | O94979B7ZL00D6RAB3D6RHE8D6RHZ5B4DIW6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.49e-17 | 76 |
multi fate stem cell | 2.34e-16 | 427 |
muscle precursor cell | 2.38e-16 | 58 |
myoblast | 2.38e-16 | 58 |
multi-potent skeletal muscle stem cell | 2.38e-16 | 58 |
somatic stem cell | 7.58e-16 | 433 |
muscle cell | 2.28e-15 | 55 |
stem cell | 1.67e-14 | 441 |
smooth muscle cell | 7.08e-13 | 43 |
smooth muscle myoblast | 7.08e-13 | 43 |
vascular associated smooth muscle cell | 1.26e-12 | 32 |
electrically responsive cell | 1.91e-11 | 61 |
electrically active cell | 1.91e-11 | 61 |
mesodermal cell | 6.64e-11 | 121 |
skin fibroblast | 2.27e-10 | 23 |