FFCP PHASE1:Hg19::chr4:25679338..25679349,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C95 | |||
|description=CAGE_peak_at_chr4:25679338..25679349,+ | |||
|id=chr4:25679338..25679349,+ | |||
|ontology_enrichment_celltype=CL:0002149!1.34e-08!6;CL:0002255!1.34e-08!6;CL:0000313!6.59e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:0000313;1.56e-19;1!CL:0002149;4.80e-13;6!CL:0002255;4.80e-13;6!CL:0000159;1.89e-10;2!CL:0000047;2.99e-10;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000313,1.56e-19,1;CL:0002149,5.11e-13,6;CL:0002255,5.11e-13,6;CL:0000159,1.89e-10,2 | |||
|ontology_enrichment_development_v019=UBERON:0005754;2.25e-19;1!UBERON:0007297;2.27e-10;2!UBERON:0005795;3.37e-08;10!UBERON:0003918;3.90e-08;10!UBERON:0007687;3.90e-08;10 | |||
|ontology_enrichment_disease=DOID:3001!1.34e-08!6;DOID:2152!6.59e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:2152;1.56e-19;1!DOID:3001;4.80e-13;6!DOID:299;3.80e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,1.56e-19,1;DOID:3001,5.11e-13,6;DOID:299,3.88e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0001255!1.12e-10!2;UBERON:0001556!1.12e-10!2;UBERON:0000489!4.18e-09!32;UBERON:0006947!3.55e-08!3;UBERON:0004054!3.55e-08!3;UBERON:0005177!9.98e-08!107;UBERON:0004175!4.46e-07!25;UBERON:0002171!5.58e-07!1;UBERON:0006518!5.58e-07!1;UBERON:0008949!5.58e-07!1;UBERON:0000101!5.58e-07!1;UBERON:0002167!5.58e-07!1;UBERON:0000464!6.26e-07!104;UBERON:0004911!6.59e-07!1;UBERON:0000998!7.35e-07!1;UBERON:0006868!7.35e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0002171;8.95e-20;1!UBERON:0006518;8.95e-20;1!UBERON:0008949;8.95e-20;1!UBERON:0000101;8.95e-20;1!UBERON:0002167;8.95e-20;1!UBERON:0004911;1.56e-19;1!UBERON:0000998;2.25e-19;1!UBERON:0006868;2.25e-19;1!UBERON:0004909;1.89e-10;2!UBERON:0004175;2.21e-08;21!UBERON:0002048;4.78e-08;22!UBERON:0000117;4.78e-08;22!UBERON:0000171;4.78e-08;22!UBERON:0000170;4.78e-08;22!UBERON:0006947;2.47e-07;3!UBERON:0004054;2.47e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002171,8.95e-20,1;UBERON:0006518,8.95e-20,1;UBERON:0008949,8.95e-20,1;UBERON:0000101,8.95e-20,1;UBERON:0002167,8.95e-20,1;UBERON:0004911,1.56e-19,1;UBERON:0000998,2.25e-19,1;UBERON:0006868,2.25e-19,1;UBERON:0004909,1.89e-10,2;UBERON:0000080,4.80e-09,9;UBERON:0002120,4.80e-09,9;UBERON:0004875,4.80e-09,9;UBERON:0005721,4.80e-09,9;UBERON:0005754,4.80e-09,9;UBERON:0007297,4.80e-09,9;UBERON:0002048,4.55e-08,22;UBERON:0000117,4.55e-08,22;UBERON:0000171,4.55e-08,22;UBERON:0000170,4.55e-08,22;UBERON:0005597,4.55e-08,22;UBERON:0000118,4.55e-08,22;UBERON:0004876,1.46e-07,11;UBERON:0006947,2.47e-07,3;UBERON:0004054,2.47e-07,3;UBERON:0004175,4.05e-07,25;UBERON:0003887,5.31e-07,12;UBERON:0002113,7.12e-07,26;UBERON:0003918,7.12e-07,26;UBERON:0011143,7.12e-07,26;UBERON:0005095,7.12e-07,26;UBERON:0007687,7.12e-07,26 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,5.58240934377942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.847294206991012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0.538545866458633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0.789168805698781,0,0,0,0,0,0,0,0,0,0.284609546029793,0,8.85154665509168,0,0,0,0,0,0,0,0,0,1.12990370390266,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315222829196793,0.104909176269996,0,0,0,0,0,1.5256112259285,0,0,0,0,0,0,0,0,0,0,0,0,0,3.31040978959853,1.72924735609633,14.0841278818046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33946505990805,0,0.743614585554013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.894336993477167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.54032230114557,1.14553434272025,0,0,4.3623618401139,0.294450700845729,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.534434810531121,0,0,0,0,0,0,0,0,0,0,0,0.763765899337979,0,0,0,0,0.502055437748735,0,0.0814032686109745,0,0,0,0,0,0.406896178315738,0,0,0 | |||
|short_description=p@chr4:25679338..25679349,+ | |||
}} |
Revision as of 00:32, 22 January 2014
Short description: | p@chr4:25679338..25679349, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:25679338..25679349, + |
Coexpression cluster: | C95_lung_aorta_trachea_penis_Alveolar_throat_endometrioid |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
serous secreting cell | 1.56e-19 | 1 |
epithelial cell of uterus | 5.11e-13 | 6 |
stromal cell of endometrium | 5.11e-13 | 6 |
seromucus secreting cell | 1.89e-10 | 2 |
Ontology term | p-value | n |
---|---|---|
lower lobe of right lung | 8.95e-20 | 1 |
right lung lobe | 8.95e-20 | 1 |
lower lobe of lung | 8.95e-20 | 1 |
lobe of lung | 8.95e-20 | 1 |
right lung | 8.95e-20 | 1 |
epithelium of female gonad | 1.56e-19 | 1 |
seminal vesicle | 2.25e-19 | 1 |
seminal fluid secreting gland | 2.25e-19 | 1 |
epithelium of gonad | 1.89e-10 | 2 |
mesonephros | 4.80e-09 | 9 |
pronephros | 4.80e-09 | 9 |
nephrogenic cord | 4.80e-09 | 9 |
pronephric mesoderm | 4.80e-09 | 9 |
rostral part of nephrogenic cord | 4.80e-09 | 9 |
presumptive pronephric mesoderm | 4.80e-09 | 9 |
lung | 4.55e-08 | 22 |
respiratory tube | 4.55e-08 | 22 |
respiration organ | 4.55e-08 | 22 |
pair of lungs | 4.55e-08 | 22 |
lung primordium | 4.55e-08 | 22 |
lung bud | 4.55e-08 | 22 |
urogenital ridge | 1.46e-07 | 11 |
male genital duct | 2.47e-07 | 3 |
internal male genitalia | 2.47e-07 | 3 |
internal genitalia | 4.05e-07 | 25 |
intraembryonic coelom | 5.31e-07 | 12 |
kidney | 7.12e-07 | 26 |
kidney mesenchyme | 7.12e-07 | 26 |
upper urinary tract | 7.12e-07 | 26 |
kidney rudiment | 7.12e-07 | 26 |
kidney field | 7.12e-07 | 26 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 1.56e-19 | 1 |
female reproductive endometrioid cancer | 5.11e-13 | 6 |
adenocarcinoma | 3.88e-07 | 25 |