FFCP PHASE1:Hg19::chr3:52705394..52705398,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C461 | |||
|description=CAGE_peak_at_chr3:52705394..52705398,+ | |||
|id=chr3:52705394..52705398,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000307;5.07e-09;3!CL:0002127;3.50e-07;1!CL:0000037;3.50e-07;1!CL:0000911;3.50e-07;1!CL:1001319;3.50e-07;1!CL:1000600;3.50e-07;1!CL:0001024;3.50e-07;1!CL:0000814;3.50e-07;1!CL:0002327;5.76e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000068,4.99e-09,3;CL:0000069,4.99e-09,3;CL:0000307,4.99e-09,3;CL:0000377,4.99e-09,3;CL:1001319,2.84e-07,1;CL:1000600,2.84e-07,1;CL:0002327,4.35e-07,4;CL:0001024,4.60e-07,1;CL:0002127,5.50e-07,1;CL:0000914,5.50e-07,1;CL:0000911,5.50e-07,1;CL:0000814,5.50e-07,1;CL:0002042,5.50e-07,1;CL:0002039,5.50e-07,1;CL:0002040,5.50e-07,1;CL:0002041,5.50e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000377;5.07e-09;3!UBERON:0009847;9.37e-09;3!UBERON:0003353;9.37e-09;3 | |||
|ontology_enrichment_disease=DOID:14566!5.03e-25!239;DOID:162!1.59e-24!235;DOID:1749!5.77e-16!14;DOID:0050686!1.82e-14!137;DOID:0050687!1.21e-12!143;DOID:305!2.61e-12!106;DOID:2531!1.70e-09!51;DOID:0060083!1.70e-09!51 | |||
|ontology_enrichment_disease_v019=DOID:1749;6.00e-15;14!DOID:0060085;3.50e-07;1!DOID:3165;3.50e-07;1!DOID:0060121;3.50e-07;1!DOID:2438;3.50e-07;1!DOID:4418;3.50e-07;1!DOID:3112;3.50e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,3.01e-15,14;DOID:162,1.44e-09,235;DOID:14566,2.88e-09,239;DOID:0050687,1.76e-08,143;DOID:305,3.20e-08,106;DOID:3112,1.85e-07,1;DOID:0060085,4.34e-07,1;DOID:3165,4.34e-07,1;DOID:0060121,4.34e-07,1;DOID:2438,4.34e-07,1;DOID:4418,4.34e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0003729!4.09e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0004913;1.35e-07;1!UBERON:0003703;1.35e-07;1!UBERON:0001174;1.35e-07;1!UBERON:0004914;1.35e-07;1!UBERON:0004645;3.50e-07;1!UBERON:0001282;3.50e-07;1!UBERON:0007195;3.50e-07;1!UBERON:0009842;3.50e-07;1!UBERON:0003704;3.50e-07;1!UBERON:0001171;3.50e-07;1!UBERON:0001256;3.50e-07;1!UBERON:0001172;3.50e-07;1!UBERON:0001259;3.50e-07;1!UBERON:0003343;4.96e-07;4!UBERON:0004785;4.96e-07;4!UBERON:0001911;5.76e-07;4!UBERON:0002394;5.76e-07;4!UBERON:0003928;5.76e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004913,1.20e-07,1;UBERON:0003703,1.20e-07,1;UBERON:0001174,1.20e-07,1;UBERON:0004914,1.20e-07,1;UBERON:0000076,2.50e-07,8;UBERON:0004645,2.84e-07,1;UBERON:0001256,2.84e-07,1;UBERON:0001259,2.84e-07,1;UBERON:0003343,4.09e-07,4;UBERON:0004785,4.09e-07,4;UBERON:0001911,4.35e-07,4;UBERON:0005333,4.35e-07,4;UBERON:0008425,4.35e-07,4;UBERON:0005311,4.35e-07,4;UBERON:0007195,5.84e-07,1;UBERON:0001282,7.40e-07,1;UBERON:0009842,7.40e-07,1;UBERON:0003704,7.40e-07,1;UBERON:0001171,7.40e-07,1;UBERON:0001172,7.40e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0,0,0,0.464448369948228,0.919421224478927,0,0,0,0.142169232487422,1.17440175733939,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0.286836620748814,0,0,1.06748995729705,0,0,0,0.163461903113459,0,0,0,0.312160076830321,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.710019185033229,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.32852159027406,1.74380363108377,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0,0,0,1.12085143993527,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308419387605311,0,0,0,0.464841513839837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0.256450125116389,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0.638063562472921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,1.34060455107157,2.17781969722645,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,1.22520107990516,0,0,0,0.318852545457645,0,0.383010740264733,0.211673582723883,0,0,0,0.156679895773023,0,0,0.1605880751037,0.201799707191048,2.12923118845163,1.37402137902306,0.307240764308458,0,0,0.19538809540204,0,0,0,0.33307196799782,0,0,0,0,0.111443384277478,1.70481688083848,0,0,0,0,0,0,0.659215496907038,0.211125408127993,0,0,0,0,0.615424027305347,0,0.988551862620595,0,0,0,0,1.11136990144637,0,0,0,0,0,0,0.568967241427498,0.508507300585533,0.236387681767936,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,1.02547850262301,0,0.0897576444097721,0,0,0,0,0,0,0.166211681900156,0,0,0,1.89753732724185,0,0.210998064528027,0.652931232636591,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45668227720456,0,0,0.30607276163049,0,0,0,0,0.330991955875499,0,0,0,0,0,0.195984794828755,3.5694274697965,0,0.171986032471617,0,0,0,0,0,0,4.11125773940253,1.19228767021794,0,0,0.480952921509202,0,0.599428828746391,0,0,0,0.864328787928898,0.99402028452346,0.471388069233591,0.951329442515298,0.209205692624666,0.815985741090574,0.288950589901519,0,0,0,0.429765441419957,1.31443677139657,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0.2249738915515,2.32140586367385,0,0,0,0,0,0,0.575745591958336,0,0,0,0,0,0,1.19730191562487,0.492555124496034,0,0.226624183040251,0,0,0,0,0,0,0,0,0,0,0.197611631897944,0,1.91502377331055,0,0,0,0,0,0,0,0,0,0,0,0,0.624902039810533,1.06154382279153,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0.155262956876259,0,0,0,0,0,1.22061219961398,0.181848659202559,0.214821114084977,0,0,0.400027764663154,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0.192914038270915,0.168942440653073,0,0,0,0,0,0,0,0,0,0.422624246717254,0.19998739585493,0.960225567247268,0.172214979660816,1.13503190713367,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0.954013051960256,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.11796972334774,1.65085738669511,12.3612462780862,0,0,0,0,0.40341013740704,0,0,1.80149109261106,2.36569737947272,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0,0.460935950223117,0.171488009437418,0,0,1.06374456795571,1.4460082245969,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0.0852134047591577,0,0.68732060563215,0,0.955538938977433,0,0,0.121917924982269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,0.399764623699716,0,1.76447435857846,0.160482733378337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12131862580613,0,0,0,0,0,0,0,1.38385556638657,0.106727345877715,0,0.538951212639521,0,0,0,0,0,0 | |||
|short_description=p@chr3:52705394..52705398,+ | |||
}} |
Revision as of 19:12, 21 January 2014
Short description: | p@chr3:52705394..52705398, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:52705394..52705398, + |
Coexpression cluster: | C461_oral_chorionic_squamous_amniotic_epidermoid_gall_bronchogenic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 4.99e-09 | 3 |
branched duct epithelial cell | 4.99e-09 | 3 |
tracheal epithelial cell | 4.99e-09 | 3 |
tracheoblast | 4.99e-09 | 3 |
bladder cell | 2.84e-07 | 1 |
lower urinary tract cell | 2.84e-07 | 1 |
mammary gland epithelial cell | 4.35e-07 | 4 |
CD34-positive, CD38-negative hematopoietic stem cell | 4.60e-07 | 1 |
innate effector T cell | 5.50e-07 | 1 |
immature NK T cell | 5.50e-07 | 1 |
effector T cell | 5.50e-07 | 1 |
mature NK T cell | 5.50e-07 | 1 |
immature NK T cell stage IV | 5.50e-07 | 1 |
immature NK T cell stage I | 5.50e-07 | 1 |
immature NK T cell stage II | 5.50e-07 | 1 |
immature NK T cell stage III | 5.50e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
hepatopancreatic ampulla | 1.20e-07 | 1 |
extrahepatic bile duct | 1.20e-07 | 1 |
common bile duct | 1.20e-07 | 1 |
duodenal papilla | 1.20e-07 | 1 |
external ectoderm | 2.50e-07 | 8 |
urinary bladder urothelium | 2.84e-07 | 1 |
wall of urinary bladder | 2.84e-07 | 1 |
mucosa of urinary bladder | 2.84e-07 | 1 |
mucosa of oral region | 4.09e-07 | 4 |
respiratory system mucosa | 4.09e-07 | 4 |
mammary gland | 4.35e-07 | 4 |
mammary bud | 4.35e-07 | 4 |
mammary ridge | 4.35e-07 | 4 |
mammary placode | 4.35e-07 | 4 |
stroma of bone marrow | 5.84e-07 | 1 |
intralobular bile duct | 7.40e-07 | 1 |
acinus | 7.40e-07 | 1 |
intrahepatic bile duct | 7.40e-07 | 1 |
portal lobule | 7.40e-07 | 1 |
hepatic acinus | 7.40e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 3.01e-15 | 14 |
cancer | 1.44e-09 | 235 |
disease of cellular proliferation | 2.88e-09 | 239 |
cell type cancer | 1.76e-08 | 143 |
carcinoma | 3.20e-08 | 106 |
papillary adenocarcinoma | 1.85e-07 | 1 |
organ system benign neoplasm | 4.34e-07 | 1 |
skin benign neoplasm | 4.34e-07 | 1 |
integumentary system benign neoplasm | 4.34e-07 | 1 |
dermis tumor | 4.34e-07 | 1 |
cutaneous fibrous histiocytoma | 4.34e-07 | 1 |