FFCP PHASE1:Mm9::chr13:21272031..21272045,+: Difference between revisions
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{{FFCP|EntrezGene=19720|HGNC=|UniProt=Q62158|association_with_transcript=-36bp_to_ENSMUST00000021761_5end|description=CAGE_peak_3_at_Trim27_5end|id=chr13:21272031..21272045,+|ontology_enrichment_celltype=CL:0000988!4.62e-09!32;CL:0002032!4.62e-09!32;CL:0000037!4.62e-09!32;CL:0000566!4.62e-09!32;CL:0000837!4.62e-09!32;CL:0000144!3.40e-07!121;CL:0000012!3.40e-07!121|ontology_enrichment_celltype_v019_2=CL:0000988,2.17e-09,32;CL:0002032,2.17e-09,32;CL:0000037,2.17e-09,32;CL:0000837,2.17e-09,32;CL:0000049,9.44e-07,19|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!4.72e-15!45;UBERON:0003061!4.72e-15!45;UBERON:0002193!4.49e-13!48;UBERON:0002405!1.73e-12!70;UBERON:0004177!5.20e-11!29;UBERON:0000072!8.02e-10!27;UBERON:0005057!1.09e-09!51;UBERON:0002370!3.14e-09!23;UBERON:0000974!3.14e-09!23;UBERON:0004807!3.14e-09!23;UBERON:0005058!3.14e-09!23;UBERON:0003351!3.14e-09!23;UBERON:0009113!3.14e-09!23;UBERON:0003295!3.14e-09!23;UBERON:0009722!3.14e-09!23;UBERON:0005562!3.14e-09!23;UBERON:0007690!3.14e-09!23;UBERON:0003408!3.88e-09!24;UBERON:0006562!9.16e-09!24;UBERON:0001557!9.16e-09!24;UBERON:0001042!9.16e-09!24;UBERON:0008814!9.16e-09!24;UBERON:0009145!9.16e-09!24;UBERON:0000926!8.57e-08!193;UBERON:0004120!8.57e-08!193;UBERON:0006603!8.57e-08!193;UBERON:0000077!2.20e-07!97;UBERON:0003929!2.60e-07!55;UBERON:0003081!3.46e-07!88;UBERON:0001041!6.37e-07!92;UBERON:0000490!8.39e-07!66;UBERON:0001004!9.64e-07!42|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.66e-15,45;UBERON:0003061,4.66e-15,45;UBERON:0002193,6.03e-13,48;UBERON:0002405,6.03e-13,48;UBERON:0004177,3.51e-11,29;UBERON:0005057,3.51e-11,29;UBERON:0000077,3.79e-10,35;UBERON:0000072,5.70e-10,27;UBERON:0002370,2.28e-09,23;UBERON:0000974,2.28e-09,23;UBERON:0004807,2.28e-09,23;UBERON:0005058,2.28e-09,23;UBERON:0003351,2.28e-09,23;UBERON:0009113,2.28e-09,23;UBERON:0003295,2.28e-09,23;UBERON:0009722,2.28e-09,23;UBERON:0005562,2.28e-09,23;UBERON:0007690,2.28e-09,23;UBERON:0003408,2.84e-09,24;UBERON:0006562,6.79e-09,24;UBERON:0001557,6.79e-09,24;UBERON:0001042,6.79e-09,24;UBERON:0008814,6.79e-09,24;UBERON:0009145,6.79e-09,24;UBERON:0000926,1.30e-07,120;UBERON:0004120,1.30e-07,120;UBERON:0006603,1.30e-07,120;UBERON:0003081,1.50e-07,87;UBERON:0003929,3.28e-07,55;UBERON:0001004,6.07e-07,42;UBERON:0000065,6.40e-07,41|phase1_expression=1.12104192973356,1.04692622291808,2.72999543633722,0.60492842261366,1.50268718983904,1.6787927191189,1.86890112476421,2.7115897922731,3.23814060948833,2.80877431586392,3.08192342805909,3.35043067780413,2.39681021903688,1.83582845079895,4.66353666541928,3.64455481301687,7.69518065940961,2.68142840554502,1.50825876966313,2.54633791078818,0.765389611359628,2.38298282882125,2.08959831311148,1.43993180514066,0.91763712426868,0,3.01533397311352,1.29282739611533,0.760093677825496,0.756090389279792,1.55211357458713,3.81018404075779,8.61090702618398,0,2.59966457776147,3.32469290716985,1.63335485009895,2.09265815368454,3.1253413780952,4.18818995179039,1.17646297606203,0.683045484958446,0.971020706062307,1.25896817975577,1.72340783073175,1.83546752161682,2.34717403304412,2.18025156380447,1.09843091367236,0.777719596297134,1.25987779462826,2.87505128729943,1.51004345451963,2.17608642603403,1.68046899571232,3.08711323243136,0.85960031981627,0.515672092277442,1.61853168687678,1.05798195854407,1.26766280701236,1.69422266034566,1.77858959222228,2.6996991518442,0.988866362566974,2.1314403448383,1.79760066311043,3.45796474789399,2.07379224616955,1.75507719831198,2.3135745748652,1.14260393761521,1.10434270475807,2.44981598429908,2.1086003624012,1.83843757322004,1.10115880999389,1.0214987046815,0.768032666281217,1.18697658957174,2.10421580285542,1.56274011167028,0.279182999001381,1.12552522006336,0.916789486660861,1.47314292736834,1.28134512719193,2.05039390407831,1.96888102666279,1.058001841495,0.579728977403356,0,3.39985666853875,2.15881276655127,0.649776417447669,0.896053774194671,1.26399978118577,1.02258193546835,1.55871602761721,0.70667914902068,0.985903938436763,2.56652954828636,2.54805239706646,7.11066703153331,2.38140145112336,2.53359865475099,4.54972000513305,0.68510327831436,0.517875767294343,0.742210695324124,2.60227990149204,1.21786191324856,2.07553947530453,1.95939432718409,0.587943535678524,1.63366568728578,1.97755974187499,0.144599356919912,0.884610551949874,1.29413479957927,3.09178125844551,2.42437626567611,0,0.292780797011547,0.41889341362691,1.27728527604296,2.03685711660064,6.59893004092748,3.43089613097275,0.599162557619291,0,0.879580464790051,0.695297280769106,1.27857728665165,0.20778804455956,0.486723789203273,2.44414473240759,2.11491850037158,1.76905930903572,1.47309299120532,1.95180664444056,2.5289231487682,1.62055916824814,1.35634336052144,1.56483948048054,0.896796041993948,1.3118241438362,0,2.15567992932842,2.64748512234947,1.75951124163949,2.6303487891309,1.39023624612799,1.39300866608867,0.61734640922383,2.9855140022774,4.21327912387941,3.08817488537658,3.40996199274711,1.8641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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:19720 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q62158 | |||
|association_with_transcript=-36bp_to_ENSMUST00000021761_5end | |||
|cluster_id=chr13:21272031..21272045,+ | |||
|description=CAGE_peak_3_at_Trim27_5end | |||
|id=chr13:21272031..21272045,+ | |||
|ontology_enrichment_celltype=CL:0000988!4.62e-09!32;CL:0002032!4.62e-09!32;CL:0000037!4.62e-09!32;CL:0000566!4.62e-09!32;CL:0000837!4.62e-09!32;CL:0000144!3.40e-07!121;CL:0000012!3.40e-07!121 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.17e-09,32;CL:0002032,2.17e-09,32;CL:0000037,2.17e-09,32;CL:0000837,2.17e-09,32;CL:0000049,9.44e-07,19 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.72e-15!45;UBERON:0003061!4.72e-15!45;UBERON:0002193!4.49e-13!48;UBERON:0002405!1.73e-12!70;UBERON:0004177!5.20e-11!29;UBERON:0000072!8.02e-10!27;UBERON:0005057!1.09e-09!51;UBERON:0002370!3.14e-09!23;UBERON:0000974!3.14e-09!23;UBERON:0004807!3.14e-09!23;UBERON:0005058!3.14e-09!23;UBERON:0003351!3.14e-09!23;UBERON:0009113!3.14e-09!23;UBERON:0003295!3.14e-09!23;UBERON:0009722!3.14e-09!23;UBERON:0005562!3.14e-09!23;UBERON:0007690!3.14e-09!23;UBERON:0003408!3.88e-09!24;UBERON:0006562!9.16e-09!24;UBERON:0001557!9.16e-09!24;UBERON:0001042!9.16e-09!24;UBERON:0008814!9.16e-09!24;UBERON:0009145!9.16e-09!24;UBERON:0000926!8.57e-08!193;UBERON:0004120!8.57e-08!193;UBERON:0006603!8.57e-08!193;UBERON:0000077!2.20e-07!97;UBERON:0003929!2.60e-07!55;UBERON:0003081!3.46e-07!88;UBERON:0001041!6.37e-07!92;UBERON:0000490!8.39e-07!66;UBERON:0001004!9.64e-07!42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.66e-15,45;UBERON:0003061,4.66e-15,45;UBERON:0002193,6.03e-13,48;UBERON:0002405,6.03e-13,48;UBERON:0004177,3.51e-11,29;UBERON:0005057,3.51e-11,29;UBERON:0000077,3.79e-10,35;UBERON:0000072,5.70e-10,27;UBERON:0002370,2.28e-09,23;UBERON:0000974,2.28e-09,23;UBERON:0004807,2.28e-09,23;UBERON:0005058,2.28e-09,23;UBERON:0003351,2.28e-09,23;UBERON:0009113,2.28e-09,23;UBERON:0003295,2.28e-09,23;UBERON:0009722,2.28e-09,23;UBERON:0005562,2.28e-09,23;UBERON:0007690,2.28e-09,23;UBERON:0003408,2.84e-09,24;UBERON:0006562,6.79e-09,24;UBERON:0001557,6.79e-09,24;UBERON:0001042,6.79e-09,24;UBERON:0008814,6.79e-09,24;UBERON:0009145,6.79e-09,24;UBERON:0000926,1.30e-07,120;UBERON:0004120,1.30e-07,120;UBERON:0006603,1.30e-07,120;UBERON:0003081,1.50e-07,87;UBERON:0003929,3.28e-07,55;UBERON:0001004,6.07e-07,42;UBERON:0000065,6.40e-07,41 | |||
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| |||
|short_description=p3@Trim27 | |||
}} |
Revision as of 18:37, 5 August 2015
Short description: | p3@Trim27 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Trim27_5end |
Coexpression cluster: | NA |
Association with transcript: | -36bp_to_ENSMUST00000021761_5end |
EntrezGene: | 19720 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.17e-09 | 32 |
hematopoietic oligopotent progenitor cell | 2.17e-09 | 32 |
hematopoietic stem cell | 2.17e-09 | 32 |
hematopoietic multipotent progenitor cell | 2.17e-09 | 32 |
common myeloid progenitor | 9.44e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.66e-15 | 45 |
blood island | 4.66e-15 | 45 |
hemolymphoid system | 6.03e-13 | 48 |
immune system | 6.03e-13 | 48 |
hemopoietic organ | 3.51e-11 | 29 |
immune organ | 3.51e-11 | 29 |
mixed endoderm/mesoderm-derived structure | 3.79e-10 | 35 |
segment of respiratory tract | 5.70e-10 | 27 |
thymus | 2.28e-09 | 23 |
neck | 2.28e-09 | 23 |
respiratory system epithelium | 2.28e-09 | 23 |
hemolymphoid system gland | 2.28e-09 | 23 |
pharyngeal epithelium | 2.28e-09 | 23 |
thymic region | 2.28e-09 | 23 |
pharyngeal gland | 2.28e-09 | 23 |
entire pharyngeal arch endoderm | 2.28e-09 | 23 |
thymus primordium | 2.28e-09 | 23 |
early pharyngeal endoderm | 2.28e-09 | 23 |
gland of gut | 2.84e-09 | 24 |
pharynx | 6.79e-09 | 24 |
upper respiratory tract | 6.79e-09 | 24 |
chordate pharynx | 6.79e-09 | 24 |
pharyngeal arch system | 6.79e-09 | 24 |
pharyngeal region of foregut | 6.79e-09 | 24 |
mesoderm | 1.30e-07 | 120 |
mesoderm-derived structure | 1.30e-07 | 120 |
presumptive mesoderm | 1.30e-07 | 120 |
lateral plate mesoderm | 1.50e-07 | 87 |
gut epithelium | 3.28e-07 | 55 |
respiratory system | 6.07e-07 | 42 |
respiratory tract | 6.40e-07 | 41 |