FFCP PHASE1:Mm9::chr11:61267392..61267412,-: Difference between revisions
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{{FFCP|EntrezGene=22671|HGNC=|MCL_coexpression_id=39|UniProt=Q96DY5,Q8JZT5,Q5NCN2|association_with_transcript=-4bp_to_NM_009548,uc007jhj.1,uc007jhk.1,uc007jhl.1_5end|description=CAGE_peak_3_at_Rnf112_5end|id=chr11:61267392..61267412,-|ontology_enrichment_celltype=CL:0000117!1.45e-11!23;CL:0000337!1.45e-11!23;CL:0000540!2.02e-08!33;CL:0000047!2.02e-08!33;CL:0000031!2.02e-08!33;CL:0000404!2.02e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,3.79e-17,23;CL:0000337,3.79e-17,23;CL:0000540,8.09e-11,33;CL:0000047,8.09e-11,33;CL:0000031,8.09e-11,33;CL:0000404,8.09e-11,33;CL:0000393,1.33e-08,39;CL:0000211,1.33e-08,39;CL:0002319,1.77e-07,43;CL:0000221,3.14e-07,44;CL:0000133,3.14e-07,44;CL:0002610,7.47e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.84e-25!52;UBERON:0005068!1.84e-25!52;UBERON:0006241!1.84e-25!52;UBERON:0007135!1.84e-25!52;UBERON:0000955!4.98e-24!50;UBERON:0006238!4.98e-24!50;UBERON:0001017!7.74e-24!73;UBERON:0005743!7.74e-24!73;UBERON:0002616!1.09e-23!49;UBERON:0000073!1.45e-22!75;UBERON:0001016!1.45e-22!75;UBERON:0003080!7.80e-20!40;UBERON:0000033!1.00e-19!63;UBERON:0002780!3.72e-19!39;UBERON:0001890!3.72e-19!39;UBERON:0006240!3.72e-19!39;UBERON:0002346!8.00e-18!71;UBERON:0003075!8.00e-18!71;UBERON:0007284!8.00e-18!71;UBERON:0002020!1.30e-17!34;UBERON:0003056!2.41e-17!49;UBERON:0004121!1.58e-15!102;UBERON:0000924!1.58e-15!102;UBERON:0006601!1.58e-15!102;UBERON:0002791!3.03e-14!29;UBERON:0003528!3.03e-14!29;UBERON:0001893!3.03e-14!29;UBERON:0007811!6.46e-10!86;UBERON:0002021!6.81e-10!10;UBERON:0000411!6.81e-10!10;UBERON:0001950!6.81e-10!10;UBERON:0000956!3.87e-09!21;UBERON:0001869!3.87e-09!21;UBERON:0000203!3.87e-09!21;UBERON:0002619!7.56e-09!17;UBERON:0000153!4.35e-08!94|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.56e-42,54;UBERON:0001049,2.15e-36,52;UBERON:0005068,2.15e-36,52;UBERON:0006241,2.15e-36,52;UBERON:0007135,2.15e-36,52;UBERON:0001017,7.11e-35,73;UBERON:0001016,1.05e-33,75;UBERON:0002020,9.15e-30,34;UBERON:0002616,9.51e-30,46;UBERON:0000955,5.84e-29,47;UBERON:0006238,5.84e-29,47;UBERON:0002346,4.88e-28,64;UBERON:0003075,4.88e-28,64;UBERON:0007284,4.88e-28,64;UBERON:0003080,6.62e-25,40;UBERON:0004121,1.01e-24,95;UBERON:0000924,1.01e-24,95;UBERON:0006601,1.01e-24,95;UBERON:0010371,1.42e-23,73;UBERON:0002780,1.56e-23,39;UBERON:0001890,1.56e-23,39;UBERON:0006240,1.56e-23,39;UBERON:0003528,2.50e-22,29;UBERON:0002791,2.50e-22,29;UBERON:0001893,2.50e-22,29;UBERON:0002021,2.79e-21,10;UBERON:0000411,2.79e-21,10;UBERON:0001950,2.79e-21,10;UBERON:0003056,3.62e-19,49;UBERON:0010314,5.01e-17,92;UBERON:0002619,3.62e-14,17;UBERON:0000025,2.93e-13,114;UBERON:0000956,3.25e-13,21;UBERON:0001869,3.25e-13,21;UBERON:0000203,3.25e-13,21;UBERON:0004111,7.49e-12,122;UBERON:0003076,1.05e-11,12;UBERON:0003057,1.05e-11,12;UBERON:0002420,7.50e-11,8;UBERON:0007245,7.50e-11,8;UBERON:0010009,7.50e-11,8;UBERON:0010011,7.50e-11,8;UBERON:0000454,7.50e-11,8;UBERON:0000369,3.76e-09,5;UBERON:0002435,3.76e-09,5;UBERON:0000204,3.76e-09,5;UBERON:0010082,3.76e-09,5;UBERON:0001948,4.27e-09,5;UBERON:0002315,4.27e-09,5;UBERON:0002240,1.59e-07,6;UBERON:0005174,1.59e-07,6;UBERON:0001137,1.59e-07,6;UBERON:0011216,1.69e-07,194;UBERON:0004684,7.47e-07,3;UBERON:0002275,7.47e-07,3|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.23164502574065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01158230429799,1.05798195854407,3.1691570175309,0,0,0,0,0,0,0,0.103689612308478,0,0.420649922702764,1.71390590642282,2.42955395046775,0.489963196859816,0.575072826109418,0,4.40463523997555,8.81042632787795,8.60196586234964,1.18697658957174,2.28719109006024,1.04182674111352,6.42120897703176,0.56276261003168,3.81995619442025,2.65165726926301,2.42031857358475,1.86399445825301,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.5709193985953,0,0,0.520455980298408,0,0,0,0,0,0,0,0,0,0,0,0,36.3048188294318,31.4170060220183,0,0,0,0,2.09706895166752,11.8950156732843,2.76439574648302,14.0797699355744,18.4115129277838,6.44142938134636,11.6813709408785,0.101839363850316,0,0,0,0,0,0,0.150704817835715,0.0680364991513279,0.12811372028485,0.281105173679186,0.258703370739016,0,0,0.175951124163949,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0.154267112887378,0,0.268273401399619,0,0,0,0,0.146199987425332,0,0.134206418760372,20.6084149592845,0.92614151141356,0,0,0,0,0.128867461322093,0.403367049246685,0,0,0,0,0,0,0.38992817423824,0,0,0,0,0,0,0.203651327845314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0.169745085775188,0.234690248288502,0.167506257441816,0,0,0,0,0.159454768657487,0,0,0,0,0,0,0,2.24770825982909,1.40654023910644,0,0,0,0,0,0,0.222798674082394,0.283076530788832,0,0.292255857911312,0,0.321321316421807,2.2710413633323,0.712262414669021,0.162886959353576,4.45419332025846,0,0.242780636154981,0,1.13163047853539,0.295301892880773,0.922305443831782,0,0,0,0,0,0,0.340439605753788,0.18006109403131,0.129358683782755,0.428674070063185,5.67488747655275,3.56737635204141,0.822745103010605,0.608929898229199,0,0,0.441056796109924,0,0,0,0.119372344003136,0.820704498725306,0,0.741701208042039,0,0.206386867963223,0.185194527369712,0,0,0,0,0,0,0,0.474503990371703,0.203319467126849,0.108005340821801,0.418176592028937,0.218362563746178,0.134864346384821,0.0826534557253359,0,0,0,0,0.149516546043979,0.165458490457098,0,0.129159823477731,0.168956125490778,0,0,0,0,0,0,0,0,0.129920822977795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19318959403219,0,0.36630324853453,0,0,12.9892923801925,13.8097570952153,16.0410743763031,13.4045482228076,13.7016503954128,23.4172108190807,12.8254275044043,15.3109209096235,13.1411298605419,11.9084871702919,0.207574695168353,0.399024873401031,0.341467211508268,0,0.419226325255965,0.183843508450014,0.222246727801615,0.412070114477788,0.64183841918363,1.26348605881899,0.25347929989024,0.377252682772152,0.280924522409647,0.640251524048693,0.804096565378586,0,0.231768651889711,0.38581844092741,0.824171801606613,0.441596760403192,0.342869252385415,0.177475806159338,1.1921809497366,0.436039249896986,0.564656282491984,0.507687647350059,0.182927972872773,0.526139422875686,0,0.561142271657738,0.830445126869219,0,0.409231043169689,0.619747364743864,0,0.249810577937946,0.233931608445408,0.429742108096597,0.191288332068843,0.220591419119515,0.463735671240843|short_description=p3@Rnf112}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:22671 | |||
|HGNC= | |||
|MCL_coexpression_id=39 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q96DY5,uniprot:Q8JZT5,uniprot:Q5NCN2 | |||
|association_with_transcript=-4bp_to_NM_009548,uc007jhj.1,uc007jhk.1,uc007jhl.1_5end | |||
|cluster_id=chr11:61267392..61267412,- | |||
|description=CAGE_peak_3_at_Rnf112_5end | |||
|id=chr11:61267392..61267412,- | |||
|ontology_enrichment_celltype=CL:0000117!1.45e-11!23;CL:0000337!1.45e-11!23;CL:0000540!2.02e-08!33;CL:0000047!2.02e-08!33;CL:0000031!2.02e-08!33;CL:0000404!2.02e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.79e-17,23;CL:0000337,3.79e-17,23;CL:0000540,8.09e-11,33;CL:0000047,8.09e-11,33;CL:0000031,8.09e-11,33;CL:0000404,8.09e-11,33;CL:0000393,1.33e-08,39;CL:0000211,1.33e-08,39;CL:0002319,1.77e-07,43;CL:0000221,3.14e-07,44;CL:0000133,3.14e-07,44;CL:0002610,7.47e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.84e-25!52;UBERON:0005068!1.84e-25!52;UBERON:0006241!1.84e-25!52;UBERON:0007135!1.84e-25!52;UBERON:0000955!4.98e-24!50;UBERON:0006238!4.98e-24!50;UBERON:0001017!7.74e-24!73;UBERON:0005743!7.74e-24!73;UBERON:0002616!1.09e-23!49;UBERON:0000073!1.45e-22!75;UBERON:0001016!1.45e-22!75;UBERON:0003080!7.80e-20!40;UBERON:0000033!1.00e-19!63;UBERON:0002780!3.72e-19!39;UBERON:0001890!3.72e-19!39;UBERON:0006240!3.72e-19!39;UBERON:0002346!8.00e-18!71;UBERON:0003075!8.00e-18!71;UBERON:0007284!8.00e-18!71;UBERON:0002020!1.30e-17!34;UBERON:0003056!2.41e-17!49;UBERON:0004121!1.58e-15!102;UBERON:0000924!1.58e-15!102;UBERON:0006601!1.58e-15!102;UBERON:0002791!3.03e-14!29;UBERON:0003528!3.03e-14!29;UBERON:0001893!3.03e-14!29;UBERON:0007811!6.46e-10!86;UBERON:0002021!6.81e-10!10;UBERON:0000411!6.81e-10!10;UBERON:0001950!6.81e-10!10;UBERON:0000956!3.87e-09!21;UBERON:0001869!3.87e-09!21;UBERON:0000203!3.87e-09!21;UBERON:0002619!7.56e-09!17;UBERON:0000153!4.35e-08!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.56e-42,54;UBERON:0001049,2.15e-36,52;UBERON:0005068,2.15e-36,52;UBERON:0006241,2.15e-36,52;UBERON:0007135,2.15e-36,52;UBERON:0001017,7.11e-35,73;UBERON:0001016,1.05e-33,75;UBERON:0002020,9.15e-30,34;UBERON:0002616,9.51e-30,46;UBERON:0000955,5.84e-29,47;UBERON:0006238,5.84e-29,47;UBERON:0002346,4.88e-28,64;UBERON:0003075,4.88e-28,64;UBERON:0007284,4.88e-28,64;UBERON:0003080,6.62e-25,40;UBERON:0004121,1.01e-24,95;UBERON:0000924,1.01e-24,95;UBERON:0006601,1.01e-24,95;UBERON:0010371,1.42e-23,73;UBERON:0002780,1.56e-23,39;UBERON:0001890,1.56e-23,39;UBERON:0006240,1.56e-23,39;UBERON:0003528,2.50e-22,29;UBERON:0002791,2.50e-22,29;UBERON:0001893,2.50e-22,29;UBERON:0002021,2.79e-21,10;UBERON:0000411,2.79e-21,10;UBERON:0001950,2.79e-21,10;UBERON:0003056,3.62e-19,49;UBERON:0010314,5.01e-17,92;UBERON:0002619,3.62e-14,17;UBERON:0000025,2.93e-13,114;UBERON:0000956,3.25e-13,21;UBERON:0001869,3.25e-13,21;UBERON:0000203,3.25e-13,21;UBERON:0004111,7.49e-12,122;UBERON:0003076,1.05e-11,12;UBERON:0003057,1.05e-11,12;UBERON:0002420,7.50e-11,8;UBERON:0007245,7.50e-11,8;UBERON:0010009,7.50e-11,8;UBERON:0010011,7.50e-11,8;UBERON:0000454,7.50e-11,8;UBERON:0000369,3.76e-09,5;UBERON:0002435,3.76e-09,5;UBERON:0000204,3.76e-09,5;UBERON:0010082,3.76e-09,5;UBERON:0001948,4.27e-09,5;UBERON:0002315,4.27e-09,5;UBERON:0002240,1.59e-07,6;UBERON:0005174,1.59e-07,6;UBERON:0001137,1.59e-07,6;UBERON:0011216,1.69e-07,194;UBERON:0004684,7.47e-07,3;UBERON:0002275,7.47e-07,3 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.23164502574065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01158230429799,1.05798195854407,3.1691570175309,0,0,0,0,0,0,0,0.103689612308478,0,0.420649922702764,1.71390590642282,2.42955395046775,0.489963196859816,0.575072826109418,0,4.40463523997555,8.81042632787795,8.60196586234964,1.18697658957174,2.28719109006024,1.04182674111352,6.42120897703176,0.56276261003168,3.81995619442025,2.65165726926301,2.42031857358475,1.86399445825301,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.5709193985953,0,0,0.520455980298408,0,0,0,0,0,0,0,0,0,0,0,0,36.3048188294318,31.4170060220183,0,0,0,0,2.09706895166752,11.8950156732843,2.76439574648302,14.0797699355744,18.4115129277838,6.44142938134636,11.6813709408785,0.101839363850316,0,0,0,0,0,0,0.150704817835715,0.0680364991513279,0.12811372028485,0.281105173679186,0.258703370739016,0,0,0.175951124163949,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0.154267112887378,0,0.268273401399619,0,0,0,0,0.146199987425332,0,0.134206418760372,20.6084149592845,0.92614151141356,0,0,0,0,0.128867461322093,0.403367049246685,0,0,0,0,0,0,0.38992817423824,0,0,0,0,0,0,0.203651327845314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0.169745085775188,0.234690248288502,0.167506257441816,0,0,0,0,0.159454768657487,0,0,0,0,0,0,0,2.24770825982909,1.40654023910644,0,0,0,0,0,0,0.222798674082394,0.283076530788832,0,0.292255857911312,0,0.321321316421807,2.2710413633323,0.712262414669021,0.162886959353576,4.45419332025846,0,0.242780636154981,0,1.13163047853539,0.295301892880773,0.922305443831782,0,0,0,0,0,0,0.340439605753788,0.18006109403131,0.129358683782755,0.428674070063185,5.67488747655275,3.56737635204141,0.822745103010605,0.608929898229199,0,0,0.441056796109924,0,0,0,0.119372344003136,0.820704498725306,0,0.741701208042039,0,0.206386867963223,0.185194527369712,0,0,0,0,0,0,0,0.474503990371703,0.203319467126849,0.108005340821801,0.418176592028937,0.218362563746178,0.134864346384821,0.0826534557253359,0,0,0,0,0.149516546043979,0.165458490457098,0,0.129159823477731,0.168956125490778,0,0,0,0,0,0,0,0,0.129920822977795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19318959403219,0,0.36630324853453,0,0,12.9892923801925,13.8097570952153,16.0410743763031,13.4045482228076,13.7016503954128,23.4172108190807,12.8254275044043,15.3109209096235,13.1411298605419,11.9084871702919,0.207574695168353,0.399024873401031,0.341467211508268,0,0.419226325255965,0.183843508450014,0.222246727801615,0.412070114477788,0.64183841918363,1.26348605881899,0.25347929989024,0.377252682772152,0.280924522409647,0.640251524048693,0.804096565378586,0,0.231768651889711,0.38581844092741,0.824171801606613,0.441596760403192,0.342869252385415,0.177475806159338,1.1921809497366,0.436039249896986,0.564656282491984,0.507687647350059,0.182927972872773,0.526139422875686,0,0.561142271657738,0.830445126869219,0,0.409231043169689,0.619747364743864,0,0.249810577937946,0.233931608445408,0.429742108096597,0.191288332068843,0.220591419119515,0.463735671240843 | |||
|short_description=p3@Rnf112 | |||
}} |
Revision as of 06:00, 6 August 2015
Short description: | p3@Rnf112 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Rnf112_5end |
Coexpression cluster: | MCL_coexpression_mm9:39 |
Association with transcript: | -4bp_to_NM_009548, uc007jhj.1, uc007jhk.1, uc007jhl.1_5end |
EntrezGene: | 22671 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.79e-17 | 23 |
neuroblast (sensu Vertebrata) | 3.79e-17 | 23 |
neuron | 8.09e-11 | 33 |
neuronal stem cell | 8.09e-11 | 33 |
neuroblast | 8.09e-11 | 33 |
electrically signaling cell | 8.09e-11 | 33 |
electrically responsive cell | 1.33e-08 | 39 |
electrically active cell | 1.33e-08 | 39 |
neural cell | 1.77e-07 | 43 |
ectodermal cell | 3.14e-07 | 44 |
neurectodermal cell | 3.14e-07 | 44 |
raphe nuclei neuron | 7.47e-07 | 3 |