FFCP PHASE1:Hg19::chr2:20403746..20403774,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C572 | |||
|description=CAGE_peak_at_chr2:20403746..20403774,+ | |||
|id=chr2:20403746..20403774,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.21e-15!254;CL:0002076!6.38e-12!43;CL:0000223!2.85e-11!59;CL:0002368!2.54e-10!13 | |||
|ontology_enrichment_celltype_v019=CL:0002327;7.42e-21;4!CL:0002076;7.86e-14;42!CL:0002621;3.05e-13;3!CL:0002328;5.46e-13;3!CL:0002623;5.46e-13;3!CL:0002251;3.01e-11;20!CL:0000244;2.13e-10;4!CL:0000731;2.13e-10;4!CL:0002252;2.28e-10;1!CL:0002202;1.37e-09;9!CL:0002632;1.37e-09;9!CL:0000312;2.44e-08;5!CL:0000622;3.78e-08;5!CL:0000240;4.38e-07;6!CL:0000311;4.38e-07;6!CL:0000079;4.38e-07;6!CL:0000237;4.38e-07;6!CL:0000154;6.28e-07;6!CL:0002368;8.70e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002327,3.51e-21,4;CL:0002076,4.24e-16,42;CL:0002621,3.57e-13,3;CL:0002328,4.84e-13,3;CL:0002623,1.35e-12,3;CL:0000223,2.56e-11,58;CL:0002251,4.52e-11,20;CL:0000244,2.18e-10,4;CL:0000731,2.18e-10,4;CL:0002252,2.50e-10,1;CL:0002202,1.37e-09,9;CL:0002632,1.37e-09,9;CL:0000066,9.09e-09,253;CL:0000312,2.19e-08,5;CL:0000622,6.47e-08,5;CL:0000240,4.00e-07,6;CL:0000311,4.00e-07,6;CL:0000079,4.00e-07,6;CL:0000237,4.00e-07,6;CL:0000036,4.00e-07,6;CL:0000357,4.00e-07,6;CL:0000114,4.00e-07,6;CL:0002368,8.71e-07,13;CL:0000154,9.81e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0009143;2.28e-10;1!UBERON:0003124;2.28e-10;1!CL:0000223;7.89e-08;58!CL:0000357;4.38e-07;6!CL:0000114;4.38e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3151;2.28e-10;1!DOID:3149;2.28e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,1.43e-10,1;DOID:3149,1.43e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.08e-20!169;UBERON:0000925!1.08e-20!169;UBERON:0006595!1.08e-20!169;UBERON:0001007!4.13e-13!155;UBERON:0001555!4.13e-13!155;UBERON:0007026!4.13e-13!155;UBERON:0005911!2.19e-12!82;UBERON:0001004!1.20e-11!72;UBERON:0000077!2.93e-11!130;UBERON:0004921!5.08e-11!129;UBERON:0004185!5.08e-11!129;UBERON:0000161!2.64e-10!35;UBERON:0005153!1.06e-09!37;UBERON:0000065!4.66e-09!53;UBERON:0005910!4.83e-07!6;UBERON:0005157!5.43e-07!51;UBERON:0003929!5.74e-07!54 | |||
|ontology_enrichment_uberon_v019=UBERON:0001911;7.42e-21;4!UBERON:0001949;3.05e-13;3!UBERON:0001043;5.46e-13;3!UBERON:0004815;5.46e-13;3!UBERON:0002031;5.46e-13;3!UBERON:0000486;1.19e-12;12!UBERON:0001041;1.58e-10;14!UBERON:0005911;2.12e-10;36!UBERON:0004807;3.27e-10;22!UBERON:0001987;5.70e-10;4!UBERON:0000365;1.72e-08;5!UBERON:0002185;3.78e-08;5!UBERON:0000161;7.10e-08;19!UBERON:0000166;7.10e-08;19!UBERON:0005910;3.28e-07;6!UBERON:0001044;6.28e-07;6!UBERON:0003293;6.28e-07;6!UBERON:0003294;6.28e-07;6!UBERON:0010047;6.28e-07;6!UBERON:0003408;6.28e-07;6!UBERON:0000167;6.28e-07;6!UBERON:0002365;6.62e-07;31!UBERON:0002330;6.62e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001911,3.51e-21,4;UBERON:0005333,3.51e-21,4;UBERON:0008425,3.51e-21,4;UBERON:0005311,3.51e-21,4;UBERON:0001949,3.57e-13,3;UBERON:0004815,4.84e-13,3;UBERON:0002031,4.84e-13,3;UBERON:0001043,5.47e-13,3;UBERON:0009143,5.47e-13,3;UBERON:0005157,1.92e-11,47;UBERON:0005153,2.32e-11,37;UBERON:0000076,6.95e-11,8;UBERON:0001987,5.97e-10,4;UBERON:0004340,5.97e-10,4;UBERON:0004119,1.10e-08,160;UBERON:0000925,1.10e-08,160;UBERON:0006595,1.10e-08,160;UBERON:0000365,1.76e-08,5;UBERON:0002185,3.52e-08,5;UBERON:0004807,5.67e-08,28;UBERON:0005910,3.34e-07,6;UBERON:0002365,4.05e-07,31;UBERON:0002330,4.05e-07,31;UBERON:0001044,9.81e-07,6;UBERON:0003293,9.81e-07,6;UBERON:0003294,9.81e-07,6;UBERON:0010047,9.81e-07,6;UBERON:0000167,9.81e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0.263766978228454,0,0,0,0.602694528023977,0,0.975865597581014,0,0.204000691244253,0,0,0.273748850145768,0,0,0,0.0787107813136792,0,0,0,1.83884244895785,0.90361775633475,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,0,0,0,0,0,0,0.087834785693126,0.0654895377488563,0.364295288292542,1.85392221392215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0.132409180813219,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0.161646056818812,0,0,0,2.70565194428616,0.818238361772504,1.14721838155602,0.121973706129595,0,0,0,0,0,0,0.643240938192885,0,0,0,0.118306800039844,0.168584690078102,0.241011029883482,0.220587945464788,0.217879444092406,0.237270619111097,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0.245976877086227,0.171567810298526,1.53650399572076,0,3.82010095164197,0.740707561268237,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.425325291727159,1.61205340865127,1.45316969256981,1.91691339582606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36669142910475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.479249710983165,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0.356857977594324,0.157702415033935,0.234282829985426,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0.606255142892519,1.66435439510497,0.30239029332968,0,0.153461973288062,0,0,0,0,0,0.154209693802656,0.532685175939381,0.164254312027618,0,1.04589340613963,0,0.40101294060657,3.22283461275637,0.229628896329213,0.182091168006717,0.262248829918848,0,0.15403067420883,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0.671624264166535,0,0,0.256450125116389,0,0.325378394664303,0.412164046590889,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0.0852266274161009,0,0.661139661443912,0.960950336825531,0.255225424989168,0.6069466851333,0,0.31481234683064,0,0,0.532306030317022,0,0,0,0,0,0,0,0,0,0.78494864019923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0.0962221127255121,0.670302275535787,0,0.376575203107117,0.43050537267123,3.36942951335251,2.66058092122005,0.689170200620878,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0.23874448473769,0.296964680832639,0,0,0,0,0,0.211125408127993,0,0,0,0.102268682502155,0,0,0,0.358042349351218,0,0.0986434056369336,0,0,0,0,0,0,0.174919999992391,0,0.568967241427498,1.27126825146383,0,0,0,0.173624994933292,0,0,0,0,0,0,0.10893846351899,0.83654246567162,0.0769502585037971,0.113942055847001,0.23056390438806,0.0897576444097721,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313932918407225,0,0,0,0,0.195984794828755,0,0.34945333648406,0,0,0,0,1.45483524732629,0,0,0,0.397429223405979,0,0.195551382734803,0,0.213452994739353,0,0,0,0,0.288109595976299,0,0,0.271808412147228,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0.360299883542404,0,0.0787831823072236,0.576911008668165,0.13480708770837,0.196854963029498,0,0,0,0,0,0,0,0,0,1.67717343799633,0.709251365692784,0.0524545881349981,0,0,0,0,0,0.25426853765475,0,0,0.326587360109409,0,0,0.170388021785422,0,0.732761168390412,0,0,0,0.171086837884329,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0.499921631848426,0,0,0,0,0,0.149254802886874,0.233713309847224,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0.521745061811734,0,0,0,0.181848659202559,0,0,0,0.400027764663154,0,0.336749488765919,0,0,0,0,0,0,0,0.71635536432595,0.308801447160972,0.219284049578707,0.176689145945881,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0.184105950251841,0.839277046316667,0.622077260032973,0,0,0,0,0,0,0,0,0.318004350653419,0.0788617450012534,0,0.705351887381368,0,0,0,0,0,0,0,0,0,0.196295437002051,0,0.183428598521679,0.115525666150338,0,0,0,0.0752103283492573,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,1.06442844195167,0,0,0,0,0.472775363535873,0.222462803784138,0.156986185701028,0,0.280272163313789,0,0,0,0,0,0,0,0,1.03608082081518,1.0243108625637,0,0.430227358820278,0,0.0852134047591577,0,0,0,0,0.559277158988962,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0.231522474323834,0.437119121007915,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0.160482733378337,0,0,0,0.157771562193185,0,0,0.5290268405154,0,0,0.432626562123789,0.126166424835079,0,0.253397002022874,0.101988829741982,0,0,0,0.151557396436479,0,0,0,0.213233981900981,0,0,0,0,0.0636471582781649,0.202117188958219,0.435433495793923,0.342233301085281,0.26940821205835,0.358611026963382,0.332660356546013,0.0814032686109745,0.106727345877715,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr2:20403746..20403774,+ | |||
}} |
Revision as of 01:56, 21 January 2014
Short description: | p@chr2:20403746..20403774, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:20403746..20403774, + |
Coexpression cluster: | C572_Urothelial_Prostate_Keratinocyte_Corneal_Mammary_Bronchial_Gingival |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mammary gland epithelial cell | 3.51e-21 | 4 |
endo-epithelial cell | 4.24e-16 | 42 |
gingival epithelial cell | 3.57e-13 | 3 |
bronchial epithelial cell | 4.84e-13 | 3 |
acinar cell of salivary gland | 1.35e-12 | 3 |
endodermal cell | 2.56e-11 | 58 |
epithelial cell of alimentary canal | 4.52e-11 | 20 |
transitional epithelial cell | 2.18e-10 | 4 |
urothelial cell | 2.18e-10 | 4 |
epithelial cell of esophagus | 2.50e-10 | 1 |
epithelial cell of tracheobronchial tree | 1.37e-09 | 9 |
epithelial cell of lower respiratory tract | 1.37e-09 | 9 |
epithelial cell | 9.09e-09 | 253 |
keratinocyte | 2.19e-08 | 5 |
acinar cell | 6.47e-08 | 5 |
stratified squamous epithelial cell | 4.00e-07 | 6 |
keratin accumulating cell | 4.00e-07 | 6 |
stratified epithelial cell | 4.00e-07 | 6 |
keratinizing barrier epithelial cell | 4.00e-07 | 6 |
epithelial fate stem cell | 4.00e-07 | 6 |
stratified epithelial stem cell | 4.00e-07 | 6 |
surface ectodermal cell | 4.00e-07 | 6 |
respiratory epithelial cell | 8.71e-07 | 13 |
protein secreting cell | 9.81e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
mammary gland | 3.51e-21 | 4 |
mammary bud | 3.51e-21 | 4 |
mammary ridge | 3.51e-21 | 4 |
mammary placode | 3.51e-21 | 4 |
gingival epithelium | 3.57e-13 | 3 |
lower respiratory tract epithelium | 4.84e-13 | 3 |
epithelium of bronchus | 4.84e-13 | 3 |
esophagus | 5.47e-13 | 3 |
esophageal region | 5.47e-13 | 3 |
epithelial fold | 1.92e-11 | 47 |
epithelial bud | 2.32e-11 | 37 |
external ectoderm | 6.95e-11 | 8 |
placenta | 5.97e-10 | 4 |
allantois | 5.97e-10 | 4 |
endoderm-derived structure | 1.10e-08 | 160 |
endoderm | 1.10e-08 | 160 |
presumptive endoderm | 1.10e-08 | 160 |
urothelium | 1.76e-08 | 5 |
bronchus | 3.52e-08 | 5 |
respiratory system epithelium | 5.67e-08 | 28 |
transitional epithelium | 3.34e-07 | 6 |
exocrine gland | 4.05e-07 | 31 |
exocrine system | 4.05e-07 | 31 |
saliva-secreting gland | 9.81e-07 | 6 |
gland of oral region | 9.81e-07 | 6 |
gland of foregut | 9.81e-07 | 6 |
oral gland | 9.81e-07 | 6 |
oral cavity | 9.81e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 1.43e-10 | 1 |
keratoacanthoma | 1.43e-10 | 1 |