FFCP PHASE1:Hg19::chr22:25615600..25615611,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=1415 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2398 | |||
|TSSclassifier=weak | |||
|UniProt=P43320 | |||
|association_with_transcript=0bp_to_NM_000496,uc003abp.1_5end | |||
|coexpression_cluster_id=C40 | |||
|description=CAGE_peak_1_at_CRYBB2_5end | |||
|id=chr22:25615600..25615611,+ | |||
|ontology_enrichment_celltype=CL:0000306!3.16e-38!4;CL:0002222!3.16e-38!4;CL:0002224!3.16e-38!4;CL:0002322!3.86e-30!5;CL:0000075!1.63e-15!27;CL:0000325!9.24e-11!39;CL:0000148!1.42e-07!10;CL:0000541!1.42e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000306;3.32e-74;4!CL:0002222;3.32e-74;4!CL:0002224;3.32e-74;4!CL:0000075;4.75e-20;27!CL:0002322;7.49e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000306,3.32e-74,4;CL:0002222,3.32e-74,4;CL:0002224,3.32e-74,4;CL:0000075,4.75e-20,27;CL:0002322,7.49e-08,5 | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.59e-12;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0010077!3.16e-38!4;UBERON:0005389!3.16e-38!4;UBERON:0000484!3.16e-38!4;UBERON:0002546!3.16e-38!4;UBERON:0000965!3.16e-38!4;UBERON:0001803!3.16e-38!4;UBERON:0003073!3.16e-38!4;UBERON:0005426!3.16e-38!4;UBERON:0000970!4.82e-21!20;UBERON:0002104!4.76e-20!21;UBERON:0000076!1.66e-19!8;UBERON:0000020!2.56e-18!23;UBERON:0001032!1.47e-17!24;UBERON:0004456!1.47e-17!24;UBERON:0000019!1.85e-14!19;UBERON:0000047!1.85e-14!19;UBERON:0004088!1.85e-14!19;UBERON:0003072!1.85e-14!19;UBERON:0003071!1.85e-14!19;UBERON:0004128!1.85e-14!19;UBERON:0007625!2.25e-14!11;UBERON:0001456!4.10e-13!21;UBERON:0001801!1.98e-11!14;UBERON:0005085!1.40e-09!29;UBERON:0002148!1.57e-09!2;UBERON:0009662!1.57e-09!2;UBERON:0000988!9.12e-07!3;UBERON:0006331!9.12e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0010077;3.32e-74;4!UBERON:0005389;3.32e-74;4!UBERON:0000484;3.32e-74;4!UBERON:0000965;3.32e-74;4!UBERON:0001803;3.32e-74;4!UBERON:0000970;1.68e-41;20!UBERON:0002104;1.47e-39;21!UBERON:0000020;3.48e-36;23!UBERON:0001032;1.05e-34;24!UBERON:0004456;1.05e-34;24!UBERON:0000019;3.07e-28;19!UBERON:0000047;3.07e-28;19!UBERON:0004088;3.07e-28;19!UBERON:0010230;3.07e-28;19!UBERON:0007625;1.17e-27;11!UBERON:0001456;1.27e-25;21!UBERON:0001801;6.21e-22;14!UBERON:0010371;3.84e-10;31!UBERON:0000490;5.10e-08;33!UBERON:0001444;5.41e-08;48!UBERON:0000966;6.55e-08;5!UBERON:0005388;6.55e-08;5!UBERON:0001802;6.55e-08;5!UBERON:0000033;4.62e-07;50!UBERON:0000153;6.22e-07;54 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010077,3.32e-74,4;UBERON:0005389,3.32e-74,4;UBERON:0000484,3.32e-74,4;UBERON:0002546,3.32e-74,4;UBERON:0000965,3.32e-74,4;UBERON:0001803,3.32e-74,4;UBERON:0003073,3.32e-74,4;UBERON:0005426,3.32e-74,4;UBERON:0000970,1.47e-39,21;UBERON:0002104,1.47e-39,21;UBERON:0000076,1.18e-37,8;UBERON:0000020,1.05e-34,24;UBERON:0001032,1.05e-34,24;UBERON:0004456,1.05e-34,24;UBERON:0007625,1.17e-27,11;UBERON:0000019,7.25e-27,20;UBERON:0000047,7.25e-27,20;UBERON:0010312,7.25e-27,20;UBERON:0004088,7.25e-27,20;UBERON:0010230,7.25e-27,20;UBERON:0003072,7.25e-27,20;UBERON:0004128,7.25e-27,20;UBERON:0003071,7.25e-27,20;UBERON:0001456,1.71e-24,22;UBERON:0001801,6.21e-22,14;UBERON:0005085,1.37e-17,31;UBERON:0001444,2.34e-11,49;UBERON:0000033,5.25e-10,56;UBERON:0000153,4.34e-09,62;UBERON:0007811,4.34e-09,62;UBERON:0003056,4.34e-09,61;UBERON:0003075,6.53e-07,82;UBERON:0007284,6.53e-07,82;UBERON:0000966,8.48e-07,6;UBERON:0005388,8.48e-07,6;UBERON:0001802,8.48e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.232387885739037,1.45125477021519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.7630744632855,242.06268558796,4.93116515790451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,915.447980901937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.0060445662587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@CRYBB2 | |||
}} |
Revision as of 15:00, 21 January 2014
Short description: | p1@CRYBB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | No |
Description: | CAGE_peak_1_at_CRYBB2_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | 0bp_to_NM_000496, uc003abp.1_5end |
EntrezGene: | CRYBB2 |
HGNC: | 2398 |
UniProt: | P43320 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
crystallin accumulating cell | 3.32e-74 | 4 |
vertebrate lens cell | 3.32e-74 | 4 |
lens epithelial cell | 3.32e-74 | 4 |
columnar/cuboidal epithelial cell | 4.75e-20 | 27 |
embryonic stem cell | 7.49e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
cuboidal epithelium | 3.32e-74 | 4 |
transparent eye structure | 3.32e-74 | 4 |
simple cuboidal epithelium | 3.32e-74 | 4 |
cranial placode | 3.32e-74 | 4 |
lens of camera-type eye | 3.32e-74 | 4 |
epithelium of lens | 3.32e-74 | 4 |
lens placode | 3.32e-74 | 4 |
lens vesicle | 3.32e-74 | 4 |
eye | 1.47e-39 | 21 |
visual system | 1.47e-39 | 21 |
external ectoderm | 1.18e-37 | 8 |
sense organ | 1.05e-34 | 24 |
sensory system | 1.05e-34 | 24 |
entire sense organ system | 1.05e-34 | 24 |
pigment epithelium of eye | 1.17e-27 | 11 |
camera-type eye | 7.25e-27 | 20 |
simple eye | 7.25e-27 | 20 |
immature eye | 7.25e-27 | 20 |
ocular region | 7.25e-27 | 20 |
eyeball of camera-type eye | 7.25e-27 | 20 |
optic cup | 7.25e-27 | 20 |
optic vesicle | 7.25e-27 | 20 |
eye primordium | 7.25e-27 | 20 |
face | 1.71e-24 | 22 |
anterior segment of eyeball | 6.21e-22 | 14 |
ectodermal placode | 1.37e-17 | 31 |
subdivision of head | 2.34e-11 | 49 |
head | 5.25e-10 | 56 |
anterior region of body | 4.34e-09 | 62 |
craniocervical region | 4.34e-09 | 62 |
pre-chordal neural plate | 4.34e-09 | 61 |
neural plate | 6.53e-07 | 82 |
presumptive neural plate | 6.53e-07 | 82 |
retina | 8.48e-07 | 6 |
photoreceptor array | 8.48e-07 | 6 |
posterior segment of eyeball | 8.48e-07 | 6 |