FFCP PHASE1:Hg19::chr20:6034557..6034560,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=164312 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16208 | |||
|TSSclassifier=strong | |||
|UniProt=Q8WUT4,Q6ZMD1 | |||
|association_with_transcript=133bp_to_NM_152611,uc002wmo.2,uc002wmp.2_5end | |||
|coexpression_cluster_id=C548 | |||
|description=CAGE_peak_10_at_LRRN4_5end | |||
|id=chr20:6034557..6034560,- | |||
|ontology_enrichment_celltype=CL:1000507!5.28e-39!12;CL:1000494!5.28e-39!12;CL:1000449!1.13e-35!16;CL:1000497!1.63e-31!18;CL:0002518!1.63e-31!18;CL:0002681!1.13e-21!13;CL:0002584!1.13e-21!13;CL:0000077!4.87e-19!19;CL:0000239!8.07e-19!3;CL:1000615!8.07e-19!3;CL:0002306!8.07e-19!3;CL:0000632!1.15e-13!2;CL:0000650!5.40e-09!3;CL:1000618!5.40e-09!3;CL:1001318!5.40e-09!3;CL:0002173!5.40e-09!3;CL:1000500!5.40e-09!3;CL:1000612!2.78e-08!7;CL:1000746!2.78e-08!7;CL:0000213!4.87e-07!57;CL:0000215!4.87e-07!57;CL:0000222!5.91e-07!119;CL:0002557!6.97e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:0000632;5.50e-34;3!CL:0000077;1.81e-12;19!CL:1000507;7.12e-11;10!CL:1000494;7.12e-11;10!CL:0000239;1.24e-09;3!CL:1000615;1.24e-09;3!CL:0002306;1.24e-09;3!CL:0000327;1.31e-07;15!CL:1000449;1.47e-07;15!CL:1000497;8.97e-07;17!CL:0002518;8.97e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000632,4.66e-34,3;CL:0000077,1.70e-12,19;CL:1000507,8.06e-11,10;CL:1000494,8.06e-11,10;CL:0000239,1.41e-09,3;CL:1000615,1.41e-09,3;CL:0002306,1.41e-09,3;CL:0000327,1.27e-07,15;CL:1000449,1.59e-07,15;CL:1000497,9.65e-07,17;CL:0002518,9.65e-07,17 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0009773!5.28e-39!12;UBERON:0001231!5.28e-39!12;UBERON:0004810!5.28e-39!12;UBERON:0004211!1.13e-35!16;UBERON:0001285!1.13e-35!16;UBERON:0007684!1.13e-35!16;UBERON:0003220!1.13e-35!16;UBERON:0004208!1.13e-35!16;UBERON:0006555!1.80e-33!17;UBERON:0005103!1.80e-33!17;UBERON:0000083!1.80e-33!17;UBERON:0009201!1.80e-33!17;UBERON:0004819!1.80e-33!17;UBERON:0006553!1.80e-33!17;UBERON:0003074!1.80e-33!17;UBERON:0003060!1.80e-33!17;UBERON:0000080!1.63e-31!18;UBERON:0002120!1.63e-31!18;UBERON:0004875!1.63e-31!18;UBERON:0005721!1.63e-31!18;UBERON:0005754!1.63e-31!18;UBERON:0007297!1.63e-31!18;UBERON:0002113!2.56e-29!27;UBERON:0003918!2.56e-29!27;UBERON:0005095!2.56e-29!27;UBERON:0007687!2.56e-29!27;UBERON:0004876!3.45e-28!20;UBERON:0003887!9.21e-27!21;UBERON:0000489!2.26e-24!32;UBERON:0001851!1.38e-22!16;UBERON:0001225!1.13e-21!13;UBERON:0008987!1.13e-21!13;UBERON:0005172!2.83e-21!55;UBERON:0005173!2.83e-21!55;UBERON:0000058!2.83e-21!26;UBERON:0002417!7.11e-19!61;UBERON:0000916!7.11e-19!61;UBERON:0006853!8.07e-19!3;UBERON:0007685!8.07e-19!3;UBERON:0004134!8.07e-19!3;UBERON:0003064!1.93e-17!37;UBERON:0006554!4.34e-17!44;UBERON:0001008!1.17e-16!45;UBERON:0000353!2.25e-16!17;UBERON:0003103!7.63e-14!69;UBERON:0005177!1.83e-12!107;UBERON:0009569!1.29e-11!113;UBERON:0003886!2.55e-11!63;UBERON:0002553!5.86e-10!70;UBERON:0003567!5.40e-09!3;UBERON:0003838!5.40e-09!3;UBERON:0005169!5.40e-09!3;UBERON:0002321!5.40e-09!3;UBERON:0005215!5.40e-09!3;UBERON:0002303!5.40e-09!3;UBERON:0002319!5.40e-09!3;UBERON:0000466!8.05e-09!126;UBERON:0000464!2.31e-08!104;UBERON:0000074!2.78e-08!7;UBERON:0001229!2.78e-08!7;UBERON:0001230!2.78e-08!7;UBERON:0005749!2.78e-08!7;UBERON:0004199!2.78e-08!7;UBERON:0004209!2.78e-08!7;UBERON:0004198!2.78e-08!7;UBERON:0003914!3.03e-08!118 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;7.12e-11;10!UBERON:0009773;7.12e-11;10!UBERON:0001231;7.12e-11;10!UBERON:0004810;7.12e-11;10!UBERON:0006853;1.24e-09;3!UBERON:0007685;1.24e-09;3!UBERON:0004134;1.24e-09;3!UBERON:0005172;4.72e-08;52!UBERON:0005173;4.72e-08;52!UBERON:0006555;1.47e-07;15!UBERON:0004819;1.47e-07;15!UBERON:0001285;1.47e-07;15!UBERON:0007684;1.47e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,8.06e-11,10;UBERON:0006853,1.41e-09,3;UBERON:0007685,1.41e-09,3;UBERON:0004134,1.41e-09,3;UBERON:0005172,9.09e-08,54;UBERON:0005173,9.09e-08,54;UBERON:0004211,1.59e-07,15;UBERON:0009773,1.59e-07,15;UBERON:0001231,1.59e-07,15;UBERON:0001285,1.59e-07,15;UBERON:0007684,1.59e-07,15;UBERON:0004208,1.59e-07,15;UBERON:0006555,4.14e-07,16;UBERON:0004819,4.14e-07,16;UBERON:0002417,5.02e-07,60;UBERON:0000916,5.02e-07,60 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.057870056657,2.94017422771084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.01439377059586,1.74306691720059,2.49932477955143,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15403067420883,0.784349769176855,1.46139224653261,0.73886140225013,0,0,0.647747748306418,0,0.812839312631559,0.501689773854853,0.254876273045038,0.831076008928724,2.0148727924996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.314727528809989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310525913752519,0,0,0,1.50257608997218,0,0,0,0.751873899297419,0,0,0,0,0,0,0,0.214441591374926,0,0.226705925512272,0,0,0,0.308801447160972,0.438568099157414,0,0.38582807654183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.813689977576877,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p10@LRRN4 | |||
}} |
Revision as of 10:10, 21 January 2014
Short description: | p10@LRRN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_LRRN4_5end |
Coexpression cluster: | C548_Mesothelial_mesenchymal_rhabdomyosarcoma_Renal_mesothelioma_Hepatic_clear |
Association with transcript: | 133bp_to_NM_152611, uc002wmo.2, uc002wmp.2_5end |
EntrezGene: | LRRN4 |
HGNC: | 16208 |
UniProt: | Q8WUT4Q6ZMD1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatic stellate cell | 4.66e-34 | 3 |
mesothelial cell | 1.70e-12 | 19 |
kidney tubule cell | 8.06e-11 | 10 |
nephron tubule epithelial cell | 8.06e-11 | 10 |
brush border epithelial cell | 1.41e-09 | 3 |
kidney cortex tubule cell | 1.41e-09 | 3 |
epithelial cell of proximal tubule | 1.41e-09 | 3 |
extracellular matrix secreting cell | 1.27e-07 | 15 |
epithelial cell of nephron | 1.59e-07 | 15 |
kidney cell | 9.65e-07 | 17 |
kidney epithelial cell | 9.65e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 8.06e-11 | 10 |
renal cortex tubule | 1.41e-09 | 3 |
region of nephron tubule | 1.41e-09 | 3 |
proximal tubule | 1.41e-09 | 3 |
abdomen element | 9.09e-08 | 54 |
abdominal segment element | 9.09e-08 | 54 |
nephron epithelium | 1.59e-07 | 15 |
renal tubule | 1.59e-07 | 15 |
nephron tubule | 1.59e-07 | 15 |
nephron | 1.59e-07 | 15 |
uriniferous tubule | 1.59e-07 | 15 |
nephrogenic mesenchyme | 1.59e-07 | 15 |
excretory tube | 4.14e-07 | 16 |
kidney epithelium | 4.14e-07 | 16 |
abdominal segment of trunk | 5.02e-07 | 60 |
abdomen | 5.02e-07 | 60 |