FFCP PHASE1:Hg19::chr12:8975144..8975169,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=144568 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23336 | |||
|TSSclassifier=strong | |||
|UniProt=F5H2W3,B3KVV6 | |||
|association_with_transcript=0bp_to_ENST00000539161,NM_144670,uc001quz.3_5end | |||
|coexpression_cluster_id=C68 | |||
|description=CAGE_peak_2_at_A2ML1_5end | |||
|id=chr12:8975144..8975169,+ | |||
|ontology_enrichment_celltype=CL:0002076!3.49e-11!43;CL:0000039!7.43e-11!7;CL:0000586!7.43e-11!7;CL:0002159!9.99e-11!13;CL:0002251!5.10e-09!21;CL:0000349!1.04e-08!3;CL:0002577!1.04e-08!3;CL:0000066!1.45e-08!254;CL:0002541!4.59e-08!3;CL:0000622!8.68e-08!5;CL:0002623!1.58e-07!3;CL:0000223!4.41e-07!59;CL:0000240!9.07e-07!6;CL:0000311!9.07e-07!6;CL:0000079!9.07e-07!6;CL:0000237!9.07e-07!6;CL:0000036!9.07e-07!6;CL:0000357!9.07e-07!6;CL:0000114!9.07e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000349;7.83e-24;19!CL:0002577;8.71e-18;3!CL:0002536;4.69e-13;2!CL:0001014;1.44e-12;2!CL:0001016;1.44e-12;2!CL:0002537;1.00e-11;5!CL:0002336;7.08e-07;1!CL:0002261;7.08e-07;1!CL:0002170;7.08e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,6.86e-24,19;CL:0002577,7.13e-18,3;CL:0002536,4.70e-13,2;CL:0001014,2.04e-12,2;CL:0001016,2.04e-12,2;CL:0002537,1.01e-11,5;CL:0002336,7.29e-07,1;CL:0002261,7.29e-07,1;CL:0002170,7.29e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0009143;1.97e-07;1!UBERON:0000358;3.01e-07;1!UBERON:0004874;4.18e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!7.85e-25!14;UBERON:0000158!7.85e-25!14;UBERON:0003124!5.09e-17!7;UBERON:0000478!1.16e-15!24;UBERON:0001987!1.20e-10!4;UBERON:0004340!1.20e-10!4;UBERON:0000305!5.45e-10!7;UBERON:0000166!1.62e-09!21;UBERON:0001004!5.72e-09!72;UBERON:0004871!1.14e-08!8;UBERON:0000161!2.08e-08!35;UBERON:0000165!3.76e-08!28;UBERON:0000930!3.76e-08!28;UBERON:0000476!4.59e-08!3;UBERON:0000920!4.59e-08!3;UBERON:0004119!6.86e-08!169;UBERON:0000925!6.86e-08!169;UBERON:0006595!6.86e-08!169;UBERON:0000974!1.02e-07!10;UBERON:0004923!1.63e-07!57;UBERON:0006562!2.07e-07!11;UBERON:0003135!5.74e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;6.42e-23;24!UBERON:0000305;1.02e-21;7!UBERON:0005631;2.38e-21;10!UBERON:0000158;2.38e-21;10!UBERON:0001987;1.76e-13;4!UBERON:0001723;1.28e-08;3!UBERON:0001033;1.28e-08;3!UBERON:0007029;1.75e-07;1!UBERON:0002372;2.30e-07;1!UBERON:0001961;2.30e-07;1!UBERON:0001744;2.30e-07;1!UBERON:0001042;2.30e-07;1!UBERON:0001735;2.30e-07;1!UBERON:0000989;4.18e-07;1!UBERON:0008811;4.18e-07;1!UBERON:0005795;7.08e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,5.85e-33,14;UBERON:0000158,5.85e-33,14;UBERON:0000478,5.72e-23,24;UBERON:0000305,1.03e-21,7;UBERON:0004871,5.63e-19,8;UBERON:0001987,1.52e-13,4;UBERON:0004340,1.52e-13,4;UBERON:0003124,1.95e-13,7;UBERON:0004923,9.51e-09,66;UBERON:0001723,1.06e-08,3;UBERON:0001033,1.06e-08,3;UBERON:0010056,1.06e-08,3;UBERON:0007029,1.75e-07,1;UBERON:0002372,2.23e-07,1;UBERON:0001961,2.23e-07,1;UBERON:0001744,2.23e-07,1;UBERON:0001735,2.23e-07,1;UBERON:0000989,4.06e-07,1;UBERON:0008811,4.06e-07,1;UBERON:0006258,4.06e-07,1;UBERON:0005876,4.06e-07,1;UBERON:0004874,4.06e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,6.77168253603534,6.06664049925443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23852898652861,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,1.48313777113772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0,0,0,0.57978255948989,0.818238361772504,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.98775256867763,1.1240175325762,0.301586917234893,1.29623823221941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.51183915378974,0.141775097242386,0.0895585227028483,0.581267877027924,0.383382679165211,0,0,0,0.432359860250884,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42502057157008,3.32870879020994,1.5119514666484,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552485933615378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14853107599234,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0.576570202095319,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,1.08890984861323,0,0,0,3.10401107475673,0.229723400206959,0,0,0,0,0,0,0,0,0,0,1.71528151186722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.5006378058836,23.7571744666111,39.9308912729002,0,0,0,0,0,0,0,0,0,0,0,1.16828856491525,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.697118721393016,3.07801034015188,0,0.23056390438806,0.0897576444097721,0,3.82801391678303,0.366390373607449,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0.17472666824203,0,0,0,0,7.75912131907355,0,1.80784592624426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,1.1248694577575,6.1904156364636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.63852017853338,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.699397538597222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0.183428598521679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48105589194647,0,0.127762427639595,0,0,0,0,0.354809480650555,0,0,0,0,0,0,0.156986185701028,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0.17071847709395,1.38251932362818,0,0,0,0,0,0,0,0,0,12.5575462731738,0,0,0,13.1141968125968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535661815816973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203977659483963,0.26721740526556,0.36757959813938,0.250707539292375,0,0,0,0,1.91910583710883,0.952257725854961,0.129177819672012,0.31037357147929,0,0,0,1.74173398317569,5.4757328173645,6.60050119542958,0.717222053926764,0.332660356546013,0,0,0,0,4.69281884806909,0,1.22068853494722,0,0,0 | |||
|short_description=p2@A2ML1 | |||
}} |
Revision as of 11:58, 11 January 2014
Short description: | p2@A2ML1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_A2ML1_5end |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | 0bp_to_ENST00000539161, NM_144670, uc001quz.3_5end |
EntrezGene: | A2ML1 |
HGNC: | 23336 |
UniProt: | F5H2W3B3KVV6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 6.86e-24 | 19 |
placental epithelial cell | 7.13e-18 | 3 |
amniotic epithelial cell | 4.70e-13 | 2 |
CD1a-positive Langerhans cell | 2.04e-12 | 2 |
immature CD1a-positive Langerhans cell | 2.04e-12 | 2 |
amnion mesenchymal stem cell | 1.01e-11 | 5 |
buccal mucosa cell | 7.29e-07 | 1 |
endothelial cell of viscerocranial mucosa | 7.29e-07 | 1 |
keratinized cell of the oral mucosa | 7.29e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 5.85e-33 | 14 |
membranous layer | 5.85e-33 | 14 |
extraembryonic structure | 5.72e-23 | 24 |
amnion | 1.03e-21 | 7 |
somatic layer of lateral plate mesoderm | 5.63e-19 | 8 |
placenta | 1.52e-13 | 4 |
allantois | 1.52e-13 | 4 |
chorion | 1.95e-13 | 7 |
organ component layer | 9.51e-09 | 66 |
tongue | 1.06e-08 | 3 |
gustatory system | 1.06e-08 | 3 |
future tongue | 1.06e-08 | 3 |
surface | 1.75e-07 | 1 |
tonsil | 2.23e-07 | 1 |
mucosa-associated lymphoid tissue | 2.23e-07 | 1 |
lymphoid tissue | 2.23e-07 | 1 |
tonsillar ring | 2.23e-07 | 1 |
penis | 4.06e-07 | 1 |
intromittent organ | 4.06e-07 | 1 |
lateral plate mesenchyme | 4.06e-07 | 1 |
undifferentiated genital tubercle | 4.06e-07 | 1 |
somatopleure | 4.06e-07 | 1 |