FFCP PHASE1:Hg19::chr11:1946100..1946117,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7140 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11950 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-30bp_to_ENST00000492075_5end | |||
|coexpression_cluster_id=C3127 | |||
|description=CAGE_peak_3_at_TNNT3_5end | |||
|id=chr11:1946100..1946117,+ | |||
|ontology_enrichment_celltype=CL:0002541!1.34e-08!3;CL:0000349!1.48e-08!3;CL:0002577!1.48e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.87e-41;19!CL:0002541;2.99e-18;3!CL:0002577;3.17e-18;3!CL:0002536;5.04e-12;2!CL:0002537;2.53e-11;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.40e-41,19;CL:0002541,2.59e-18,3;CL:0002577,3.27e-18,3;CL:0002536,3.70e-12,2;CL:0002537,2.53e-11,5;CL:1001319,9.51e-07,1;CL:1000600,9.51e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0000358;3.57e-07;1!UBERON:0003124;4.92e-07;1 | |||
|ontology_enrichment_disease=DOID:1749!2.91e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:1799;3.78e-07;1!DOID:10165;3.78e-07;1!DOID:1798;3.78e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,3.78e-07,1;DOID:10165,3.78e-07,1;DOID:1798,3.78e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!2.22e-24!14;UBERON:0000158!2.22e-24!14;UBERON:0000478!8.31e-18!24;UBERON:0003124!1.14e-17!7;UBERON:0000974!1.69e-13!10;UBERON:0004923!1.21e-11!57;UBERON:0001987!9.06e-11!4;UBERON:0004340!9.06e-11!4;UBERON:0003343!1.64e-09!4;UBERON:0004785!1.64e-09!4;UBERON:0000305!3.80e-09!7;UBERON:0006562!7.19e-09!11;UBERON:0000476!1.34e-08!3;UBERON:0000920!1.34e-08!3;UBERON:0000344!2.82e-08!12;UBERON:0004871!6.25e-08!8;UBERON:0000161!6.75e-08!35;UBERON:0003729!1.35e-07!5;UBERON:0001723!1.75e-07!3;UBERON:0001033!1.75e-07!3;UBERON:0010056!1.75e-07!3;UBERON:0001042!2.60e-07!10;UBERON:0009145!2.60e-07!10;UBERON:0006947!2.79e-07!3;UBERON:0004054!2.79e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;3.09e-44;24!UBERON:0005631;5.70e-36;10!UBERON:0000158;5.70e-36;10!UBERON:0001987;1.55e-23;4!UBERON:0000305;1.66e-20;7!UBERON:0003124;2.99e-18;3!UBERON:0000920;2.99e-18;3!UBERON:0000341;5.04e-12;2!UBERON:0001255;6.67e-12;2!UBERON:0001556;6.67e-12;2!UBERON:0000974;9.57e-09;6!UBERON:0000077;4.82e-07;27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.40e-57,14;UBERON:0000158,2.40e-57,14;UBERON:0000478,2.50e-44,24;UBERON:0003124,5.21e-40,7;UBERON:0001987,1.74e-23,4;UBERON:0004340,1.74e-23,4;UBERON:0000305,1.33e-20,7;UBERON:0000920,2.59e-18,3;UBERON:0004871,5.28e-18,8;UBERON:0004923,4.48e-14,66;UBERON:0000341,4.39e-12,2;UBERON:0001255,6.14e-12,2;UBERON:0001556,6.14e-12,2;UBERON:0004645,9.51e-07,1;UBERON:0001256,9.51e-07,1;UBERON:0001259,9.51e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,4.80571018686379,1.58260186937072,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.2511385896376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.414644220061482,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.25572963234866,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00034104211935,0,0,0,0,0,0,0,1.03473071292505,0,0.184369168541703,0,0,0,0,0,0,22.1283127155769,8.32177197552485,42.3346410661552,0,0,0,0.256278298511402,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470719003883896,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0.106824071127473,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30.3205495616866,97.7013799939381,32.8661951246178,0,0,0,0,0,0.796991953004279,0,0,0,0,0,0,0,0,3.05794557474494,0,0,0,0,0,0,0,0,0.227586896570999,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0.46112780877612,2.33369875465408,0.434589487688032,53.9111959946944,3.93869651628008,74.0918338665902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0.978323094660449,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39781334593624,0,0,0,0,0,0,3.38971111170799,0,0,0,0,0,0,8.39200360244947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0.670869375198532,0.0788057072991982,0.524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427149650270779,0.943225830597996,0.828478110694391,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.11038630016486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.687034029507179,0.707818340086442,1.10057159113007,0.693153996902029,0,0,0,0.225630985047772,0,0,10.4762677792569,0,0,0,0,0,0,0,0,1.48863353516788,0,0.638812138197976,0,0,0,0,4.52382087829458,0,0,0,0,0,0,0.941917114206168,0,51.2898058864234,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0.430227358820278,0,0,0.423387050190929,0,0,0,0,0,0,0,0.102662806856247,1.1598144313382,0,0,0,0,0,0,0,0,0,0,2.94177986104687,0,0,0,0,0,0,0,0,28.2115222996939,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218531143927391,0,0.305966489225945,0,0,0,0.227336094654718,0,0,0,1.49263787330687,4.76128862927481,0.193766729508018,0.496597714366863,0,0.0636471582781649,0,0.435433495793923,1.36893320434112,0.336760265072938,0.358611026963382,4.9899053481902,1.54666210360852,0,0,0,11.7320471201727,0,0,0.665756774185513,0,0 | |||
|short_description=p3@TNNT3 | |||
}} |
Revision as of 06:05, 11 January 2014
Short description: | p3@TNNT3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TNNT3_5end |
Coexpression cluster: | C3127_amniotic_chorionic_rectal_Placental_squamous_umbilical_pancreatic |
Association with transcript: | -30bp_to_ENST00000492075_5end |
EntrezGene: | TNNT3 |
HGNC: | 11950 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.40e-41 | 19 |
chorionic membrane mesenchymal stem cell | 2.59e-18 | 3 |
placental epithelial cell | 3.27e-18 | 3 |
amniotic epithelial cell | 3.70e-12 | 2 |
amnion mesenchymal stem cell | 2.53e-11 | 5 |
bladder cell | 9.51e-07 | 1 |
lower urinary tract cell | 9.51e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.40e-57 | 14 |
membranous layer | 2.40e-57 | 14 |
extraembryonic structure | 2.50e-44 | 24 |
chorion | 5.21e-40 | 7 |
placenta | 1.74e-23 | 4 |
allantois | 1.74e-23 | 4 |
amnion | 1.33e-20 | 7 |
egg chorion | 2.59e-18 | 3 |
somatic layer of lateral plate mesoderm | 5.28e-18 | 8 |
organ component layer | 4.48e-14 | 66 |
throat | 4.39e-12 | 2 |
urinary bladder | 6.14e-12 | 2 |
lower urinary tract | 6.14e-12 | 2 |
urinary bladder urothelium | 9.51e-07 | 1 |
wall of urinary bladder | 9.51e-07 | 1 |
mucosa of urinary bladder | 9.51e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 3.78e-07 | 1 |
endocrine pancreas cancer | 3.78e-07 | 1 |
pancreatic endocrine carcinoma | 3.78e-07 | 1 |