FFCP PHASE1:Hg19::chr10:95242044..95242072,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26509 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3656 | |||
|TSSclassifier=strong | |||
|UniProt=F8W8J4,C9JCN0,Q9NZM1 | |||
|association_with_transcript=1bp_to_ENST00000371489,ENST00000371501,ENST00000371502,NM_013451,NM_133337,uc001kin.2,uc001kio.2,uc001kip.3,uc009xuf.2_5end | |||
|coexpression_cluster_id=C2080 | |||
|description=CAGE_peak_1_at_MYOF_5end | |||
|id=chr10:95242044..95242072,- | |||
|ontology_enrichment_celltype=CL:0000055!8.10e-20!180;CL:0000057!8.66e-17!75;CL:0000220!6.52e-15!246;CL:0002321!2.66e-14!248;CL:0000066!3.67e-13!254;CL:0000222!5.60e-13!119;CL:0000076!3.33e-12!62;CL:0000548!1.74e-11!679;CL:0000004!1.74e-11!679;CL:0000255!1.74e-11!679;CL:0002620!6.52e-11!23;CL:0000012!9.39e-11!682;CL:0000680!5.49e-07!57;CL:0000056!5.49e-07!57;CL:0000355!5.49e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0002620;4.98e-11;23!CL:0000057;2.03e-07;73!CL:0000076;7.40e-07;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.78e-17,76;CL:0002321,7.60e-15,250;CL:0000222,2.57e-13,121;CL:0000066,1.02e-12,253;CL:0000076,1.15e-12,63;CL:0002620,5.32e-11,23;CL:0000680,2.36e-07,58;CL:0000056,2.36e-07,58;CL:0000355,2.36e-07,58;CL:0000187,9.32e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002100!1.71e-16!216;UBERON:0003102!3.53e-16!95;UBERON:0000468!3.94e-15!659;UBERON:0000475!5.24e-14!365;UBERON:0000467!3.47e-13!625;UBERON:0000480!7.19e-13!626;UBERON:0000914!5.62e-12!83;UBERON:0002329!5.62e-12!83;UBERON:0003077!5.62e-12!83;UBERON:0003059!5.62e-12!83;UBERON:0007282!5.62e-12!83;UBERON:0009618!5.62e-12!83;UBERON:0007285!5.62e-12!83;UBERON:0003104!2.16e-11!238;UBERON:0009142!2.16e-11!238;UBERON:0005256!2.50e-11!143;UBERON:0002097!9.27e-11!40;UBERON:0000926!9.37e-11!448;UBERON:0004120!9.37e-11!448;UBERON:0006603!9.37e-11!448;UBERON:0002199!2.02e-10!45;UBERON:0002416!2.02e-10!45;UBERON:0000486!1.09e-09!82;UBERON:0002049!6.18e-09!79;UBERON:0007798!6.18e-09!79;UBERON:0004290!8.84e-09!70;UBERON:0000490!3.92e-08!138;UBERON:0000481!6.73e-08!347;UBERON:0004923!1.89e-07!57;UBERON:0000062!2.76e-07!511;UBERON:0004872!3.05e-07!84;UBERON:0000055!3.53e-07!69;UBERON:0001981!4.55e-07!60;UBERON:0007500!4.55e-07!60;UBERON:0004537!4.55e-07!60;UBERON:0006965!4.55e-07!60 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;5.94e-09;41!UBERON:0002199;4.73e-08;46!UBERON:0002416;4.73e-08;46!UBERON:0004923;5.93e-08;55 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,1.74e-17,99;UBERON:0002100,2.19e-13,199;UBERON:0002097,2.16e-11,41;UBERON:0002199,4.99e-11,46;UBERON:0002416,4.99e-11,46;UBERON:0000490,1.29e-10,148;UBERON:0000486,3.88e-10,83;UBERON:0004923,1.12e-09,66;UBERON:0007524,3.20e-09,73;UBERON:0002329,3.57e-09,71;UBERON:0003059,3.57e-09,71;UBERON:0007282,3.57e-09,71;UBERON:0004290,3.57e-09,71;UBERON:0009618,3.57e-09,71;UBERON:0003104,3.95e-09,160;UBERON:0009142,3.95e-09,160;UBERON:0003077,7.89e-09,72;UBERON:0007285,7.89e-09,72;UBERON:0007503,9.84e-09,78;UBERON:0002049,1.11e-08,78;UBERON:0007798,1.11e-08,78;UBERON:0005256,2.39e-08,122;UBERON:0000055,5.74e-07,68;UBERON:0004872,5.83e-07,83;UBERON:0002385,7.96e-07,64;UBERON:0001015,7.96e-07,64;UBERON:0000383,7.96e-07,64;UBERON:0007500,8.35e-07,59;UBERON:0001981,8.35e-07,59;UBERON:0004537,8.35e-07,59;UBERON:0006965,8.35e-07,59;UBERON:0001134,8.90e-07,62;UBERON:0002036,8.90e-07,62;UBERON:0003082,8.90e-07,62 | |||
|phase1_expression=44.6928813005569,36.1829885375762,52.2940839196053,32.0234554730017,31.7342377043374,34.0212024399144,20.2639902534648,29.6908340510611,10.7086107561934,3.93174298402414,8.37361401566913,17.693751142544,12.1332809985089,34.9021115347332,54.0177722436503,19.4974292471015,11.4511960324556,28.4820935251076,16.5897151588772,12.6814689819092,15.7080532258075,4.70182082217132,8.87331560106276,17.6568008344021,20.7145355331425,0,0,0,0.786728553697808,0.383829398097213,1.08371286321253,22.0661093874943,25.301297177373,35.4963849760116,0,0,0,2.76997704265939,2.20598892217156,0.868043482863407,0.447830948479849,1.6194683300949,0.515151135268373,1.01778767145695,3.02300754951048,0.970336244751265,2.78914844286822,2.87817521615278,5.57471467611186,12.3707728698525,16.1381245113333,9.22280696565482,3.7922024881028,4.51839278508678,0,0.564727018627814,1.09162460023138,1.79778787556068,4.59125838556354,4.8139354061414,3.83602275479425,10.5552416059749,15.9570926097305,6.39337125799041,4.06292934080018,4.53908179752912,3.73693349397345,8.79370328398601,12.5155900420848,7.8187984093842,5.44859552370032,4.41933163185078,4.43047342417238,1.69004229049553,2.55125159958052,1.04829322754188,0.22465726229299,0.150176892841506,1.12507910687956,1.99508920618874,1.59133341759272,1.27864907635244,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0.263384084775077,0,0,0,0.167186495390678,0,0,0,1.11410456885174,0,0,0,1.66518715643378,1.56071217071854,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0.127986611154418,0,0.473554504088034,0,0,0,0,63.38978524163,14.0847180537764,22.7595360081484,46.2642115052245,48.6297773316813,31.2868480955379,13.5198610998687,20.4386645527107,34.1270689962285,27.2727158878954,30.8300097782872,7.40031776562076,13.4789256668241,14.0898088258083,17.2010118636982,14.4527681958392,15.2901654596695,0,0,0.371457501329565,29.4168362902724,36.1298529944572,38.532595678443,50.3124068312369,39.4329470037312,33.0141650328081,44.097937939267,79.0755283058146,69.3744212239085,47.5303270125832,35.4489799056049,32.691700545896,24.1621436972688,45.9578850432336,21.8738325928075,57.062526373527,46.9266388788695,52.7021728661948,15.3316637465883,21.833110170067,26.5642528699091,0,0,11.7745394078484,79.0185403195556,33.4304550794491,109.899620074972,78.0195608436773,29.4374757224636,38.1260768096769,19.2148192313469,25.9000925838018,39.2125904603706,28.5586624787739,27.4615997230611,17.8601764621019,26.5040925260799,13.824964478194,49.0091320623603,31.9464220064892,48.5708211793353,45.7994544710683,33.183953595467,34.1295460286464,67.7791848566246,27.7605557124596,65.198567921908,60.5881457213847,54.8932582998396,15.4727431529464,12.9351265526923,38.5489700954812,34.1573559250462,73.6990547187927,59.2619788189131,68.6532662589804,58.5928429735728,25.8625377604848,124.137627896692,42.9250351525321,54.0426347956883,94.5286952665867,60.3887821337252,172.619161830572,78.3551965155993,98.902930693382,64.7956084321971,128.23635731601,55.5060888813065,42.6745590001663,178.924834628374,68.0076663036572,48.1552082161785,37.106083807353,41.4574103298069,51.9116317654097,0.609868530647977,0.132529768321485,2.78865462886844,4.25010325563019,2.77552935963191,0.36497735907583,51.6283456688393,79.1186353977249,48.3472224733682,49.2230003713898,52.6972021618797,13.7235888046219,13.8239445864043,14.9426838527759,14.7793923461408,15.9051994187456,12.1008015746659,10.9213359609733,11.5770664423954,13.8508976500701,10.3341763647451,15.426595118379,11.5240723172792,17.641045366265,0,1.96565443335525,2.95394953340702,0,9.83907508344908,42.3772491437358,54.4361415626783,29.2244558469811,22.5184898202053,51.2014101726669,12.3807156017923,6.23960871167747,28.8662684050547,19.7081688457631,51.7772341579974,18.9120046567007,12.0376233269919,16.55211124441,12.6432703673484,24.0376125386564,5.66299114001014,48.4388828838222,18.578895286091,24.370796836562,43.3393890753058,40.8312280058073,30.718573287077,24.1226168966588,29.1370836165561,0,0.088048434013226,0,0.576479813667846,0.12624243342638,6.1592957463404,23.6832823846132,9.37739577680376,15.3965201420435,20.1541885698514,14.1161237186641,4.0015700568281,27.1357224115773,22.6699235793306,31.2421097597247,34.1277329600533,32.1890801266694,23.668477071568,69.6757865452361,71.7651314688426,9.51667284769926,14.1849132023278,11.1897315186762,27.3087967887062,4.88359444852299,6.58592269424615,32.8993546136672,23.455868617008,5.543663110534,39.7899977718654,20.9168030064071,21.9940580600525,10.9461402577071,4.01805673145701,14.7583757638122,81.2328260116465,82.700593800562,22.8219048065149,36.9192332002327,49.9307463797432,27.2172664124641,0,0,0.215627574859517,0,3.30323011489202,0,2.31986643833309,1.00509759200609,1.27587750330633,0,0,0,36.4393730405845,16.5056271949693,39.6046934601614,100.657896980911,77.7950391155625,76.3279688764244,78.3676066301251,57.4807050479943,13.6444502433591,19.6598835455759,27.2332495399529,23.2305152362546,84.1033388051042,7.83204629850962,4.46086450954113,0.82707210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| |||
|short_description=p1@MYOF | |||
}} |
Revision as of 04:13, 11 January 2014
Short description: | p1@MYOF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MYOF_5end |
Coexpression cluster: | C2080_mucinous_Fibroblast_epithelioid_Preadipocyte_Olfactory_prostate_acantholytic |
Association with transcript: | 1bp_to_ENST00000371489, ENST00000371501, ENST00000371502, NM_013451, NM_133337, uc001kin.2, uc001kio.2, uc001kip.3, uc009xuf.2_5end |
EntrezGene: | MYOF |
HGNC: | 3656 |
UniProt: | F8W8J4C9JCN0Q9NZM1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.78e-17 | 76 |
embryonic cell | 7.60e-15 | 250 |
mesodermal cell | 2.57e-13 | 121 |
epithelial cell | 1.02e-12 | 253 |
squamous epithelial cell | 1.15e-12 | 63 |
skin fibroblast | 5.32e-11 | 23 |
muscle precursor cell | 2.36e-07 | 58 |
myoblast | 2.36e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.36e-07 | 58 |
muscle cell | 9.32e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
surface structure | 1.74e-17 | 99 |
trunk | 2.19e-13 | 199 |
skin of body | 2.16e-11 | 41 |
integument | 4.99e-11 | 46 |
integumental system | 4.99e-11 | 46 |
unilaminar epithelium | 1.29e-10 | 148 |
multilaminar epithelium | 3.88e-10 | 83 |
organ component layer | 1.12e-09 | 66 |
dense mesenchyme tissue | 3.20e-09 | 73 |
somite | 3.57e-09 | 71 |
presomitic mesoderm | 3.57e-09 | 71 |
presumptive segmental plate | 3.57e-09 | 71 |
dermomyotome | 3.57e-09 | 71 |
trunk paraxial mesoderm | 3.57e-09 | 71 |
mesenchyme | 3.95e-09 | 160 |
entire embryonic mesenchyme | 3.95e-09 | 160 |
paraxial mesoderm | 7.89e-09 | 72 |
presumptive paraxial mesoderm | 7.89e-09 | 72 |
epithelial vesicle | 9.84e-09 | 78 |
vasculature | 1.11e-08 | 78 |
vascular system | 1.11e-08 | 78 |
trunk mesenchyme | 2.39e-08 | 122 |
vessel | 5.74e-07 | 68 |
splanchnic layer of lateral plate mesoderm | 5.83e-07 | 83 |
muscle tissue | 7.96e-07 | 64 |
musculature | 7.96e-07 | 64 |
musculature of body | 7.96e-07 | 64 |
epithelial tube open at both ends | 8.35e-07 | 59 |
blood vessel | 8.35e-07 | 59 |
blood vasculature | 8.35e-07 | 59 |
vascular cord | 8.35e-07 | 59 |
skeletal muscle tissue | 8.90e-07 | 62 |
striated muscle tissue | 8.90e-07 | 62 |
myotome | 8.90e-07 | 62 |