FFCP PHASE1:Hg19::chr9:98279241..98279259,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5727|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9585|TSSclassifier=S|UniProt=Q13635,F5H3A7,Q59FG5|association_with_transcript=0bp_to_ENST00000375274,ENST00000437951,ENST00000544247,NM_001083602,NM_001083603,uc004avm.3,uc004avo.2,uc010mrr.2,uc010mrv.1,uc010mrw.1_5end|description=CAGE_peak_6_at_PTCH1_5end|id=chr9:98279241..98279259,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:1036;7.51e-07;8|ontology_enrichment_disease_v019_2=DOID:1036,7.32e-07,8|ontology_enrichment_uberon=UBERON:0007023!8.71e-29!115;UBERON:0001049!1.63e-19!57;UBERON:0005068!1.63e-19!57;UBERON:0006241!1.63e-19!57;UBERON:0007135!1.63e-19!57;UBERON:0003075!2.88e-19!86;UBERON:0007284!2.88e-19!86;UBERON:0002346!5.55e-19!90;UBERON:0001017!6.67e-17!82;UBERON:0000955!1.79e-16!69;UBERON:0006238!1.79e-16!69;UBERON:0005743!3.04e-16!86;UBERON:0000073!5.10e-16!94;UBERON:0001016!5.10e-16!94;UBERON:0002616!9.79e-16!59;UBERON:0002780!3.20e-15!41;UBERON:0001890!3.20e-15!41;UBERON:0006240!3.20e-15!41;UBERON:0003080!1.49e-14!42;UBERON:0002020!1.73e-14!34;UBERON:0003528!1.73e-14!34;UBERON:0001893!2.81e-14!34;UBERON:0002791!1.15e-13!33;UBERON:0001869!3.31e-13!32;UBERON:0003056!6.08e-12!61;UBERON:0000153!1.62e-11!129;UBERON:0007811!1.62e-11!129;UBERON:0000033!3.94e-11!123;UBERON:0001950!9.77e-11!20;UBERON:0002619!1.11e-10!22;UBERON:0000924!2.80e-10!173;UBERON:0006601!2.80e-10!173;UBERON:0004121!3.28e-10!169;UBERON:0000956!3.68e-10!25;UBERON:0000203!3.68e-10!25;UBERON:0000059!7.92e-07!11|ontology_enrichment_uberon_v019=UBERON:0004907;1.31e-11;5!UBERON:0000160;5.94e-11;17!UBERON:0000059;1.21e-10;11!UBERON:0005409;2.28e-10;22!UBERON:0002619;7.29e-10;22!UBERON:0003528;1.72e-09;34!UBERON:0002020;1.72e-09;34!UBERON:0001052;7.15e-09;4!UBERON:0001950;1.08e-08;20!UBERON:0000956;1.55e-08;25!UBERON:0000203;1.55e-08;25!UBERON:0002791;3.25e-08;32!UBERON:0001869;3.63e-08;32!UBERON:0000073;2.27e-07;53!UBERON:0002616;2.27e-07;53!UBERON:0002771;2.53e-07;2!UBERON:0004921;4.93e-07;33!UBERON:0001893;9.46e-07;34|ontology_enrichment_uberon_v019_2=UBERON:0004907,1.45e-11,5;UBERON:0007023,3.26e-11,114;UBERON:0000160,5.34e-11,17;UBERON:0000059,1.03e-10,11;UBERON:0001049,1.19e-10,56;UBERON:0005068,1.19e-10,56;UBERON:0006241,1.19e-10,56;UBERON:0007135,1.19e-10,56;UBERON:0003075,1.77e-10,82;UBERON:0007284,1.77e-10,82;UBERON:0003528,1.87e-10,34;UBERON:0002020,1.87e-10,34;UBERON:0011216,6.14e-10,223;UBERON:0002619,8.07e-10,22;UBERON:0000073,8.11e-10,53;UBERON:0002616,8.11e-10,53;UBERON:0002346,8.80e-10,86;UBERON:0002791,1.91e-09,32;UBERON:0001869,1.91e-09,32;UBERON:0000955,4.18e-09,68;UBERON:0006238,4.18e-09,68;UBERON:0001016,4.20e-09,89;UBERON:0005409,5.04e-09,25;UBERON:0001052,7.20e-09,4;UBERON:0001893,8.84e-09,34;UBERON:0001950,1.41e-08,20;UBERON:0000956,1.69e-08,25;UBERON:0000203,1.69e-08,25;UBERON:0010371,2.83e-08,104;UBERON:0001017,3.34e-08,81;UBERON:0002780,5.84e-07,41;UBERON:0001890,5.84e-07,41;UBERON:0003080,5.84e-07,41;UBERON:0006240,5.84e-07,41;UBERON:0003056,6.20e-07,61;UBERON:0002771,6.64e-07,2|phase1_expression=0,0,0.140954404095971,0,0.893922188854576,0,0,0,0,0.245733936501509,0,0,0,0.37129905888014,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0,0.136874425072884,0.125542639594803,0,0,0,0,0.383829398097213,0,0,0,0,0,0,0,0,0.200544447470142,0.434021741431704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0.130059347559878,0,0,0.289803085735052,0.14828656316206,0,0,0.113309342697566,0,0,0.253019692019503,0.318565414324097,0,0,0.301150238155546,0.639933055772092,0,0.236777252044017,0,0,0.802320587350522,0.144824403882799,0,0,0.12786256184353,0,0,0,0.795285947051099,0,0,0,0.087834785693126,0.785874452986276,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0.488124115096339,0.367663080345869,0,0.17859945656816,0,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0,0,0,0.354668382198357,0,0,0.24666754841716,0.311211035399766,0.134710672069688,0,0.302714855289863,0,0,0,0,0,0.117434498643765,0.485618833104395,0.280901613404497,0.204154171254893,0,0.516628905878827,0,0,0,0,0.168336113954066,0.125118519871964,0.277064115484183,0,0,0,0,0.179389635688862,0,0,0,0.103052529238439,0,0,0,0.0974370051611986,0.252433774244115,0.0920498986422993,0.646584227275248,0,0,0.169560592310488,0,0,0,0.243947412259191,0.265059536642971,0.116193942869518,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0,0,0.241011029883482,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0.325808305310325,0,0,0.115930404975077,0.234817388471643,0.144366447761074,0.462985512576611,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0.176096868026452,0.207328115540772,0,0.25248486685276,0.063497894292169,0.763976851116555,1.17217447210047,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5727 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9585 | |||
|TSSclassifier=S | |||
|UniProt=Q13635,F5H3A7,Q59FG5 | |||
|association_with_transcript=0bp_to_ENST00000375274,ENST00000437951,ENST00000544247,NM_001083602,NM_001083603,uc004avm.3,uc004avo.2,uc010mrr.2,uc010mrv.1,uc010mrw.1_5end | |||
|description=CAGE_peak_6_at_PTCH1_5end | |||
|id=chr9:98279241..98279259,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1036;7.51e-07;8 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,7.32e-07,8 | |||
|ontology_enrichment_uberon=UBERON:0007023!8.71e-29!115;UBERON:0001049!1.63e-19!57;UBERON:0005068!1.63e-19!57;UBERON:0006241!1.63e-19!57;UBERON:0007135!1.63e-19!57;UBERON:0003075!2.88e-19!86;UBERON:0007284!2.88e-19!86;UBERON:0002346!5.55e-19!90;UBERON:0001017!6.67e-17!82;UBERON:0000955!1.79e-16!69;UBERON:0006238!1.79e-16!69;UBERON:0005743!3.04e-16!86;UBERON:0000073!5.10e-16!94;UBERON:0001016!5.10e-16!94;UBERON:0002616!9.79e-16!59;UBERON:0002780!3.20e-15!41;UBERON:0001890!3.20e-15!41;UBERON:0006240!3.20e-15!41;UBERON:0003080!1.49e-14!42;UBERON:0002020!1.73e-14!34;UBERON:0003528!1.73e-14!34;UBERON:0001893!2.81e-14!34;UBERON:0002791!1.15e-13!33;UBERON:0001869!3.31e-13!32;UBERON:0003056!6.08e-12!61;UBERON:0000153!1.62e-11!129;UBERON:0007811!1.62e-11!129;UBERON:0000033!3.94e-11!123;UBERON:0001950!9.77e-11!20;UBERON:0002619!1.11e-10!22;UBERON:0000924!2.80e-10!173;UBERON:0006601!2.80e-10!173;UBERON:0004121!3.28e-10!169;UBERON:0000956!3.68e-10!25;UBERON:0000203!3.68e-10!25;UBERON:0000059!7.92e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0004907;1.31e-11;5!UBERON:0000160;5.94e-11;17!UBERON:0000059;1.21e-10;11!UBERON:0005409;2.28e-10;22!UBERON:0002619;7.29e-10;22!UBERON:0003528;1.72e-09;34!UBERON:0002020;1.72e-09;34!UBERON:0001052;7.15e-09;4!UBERON:0001950;1.08e-08;20!UBERON:0000956;1.55e-08;25!UBERON:0000203;1.55e-08;25!UBERON:0002791;3.25e-08;32!UBERON:0001869;3.63e-08;32!UBERON:0000073;2.27e-07;53!UBERON:0002616;2.27e-07;53!UBERON:0002771;2.53e-07;2!UBERON:0004921;4.93e-07;33!UBERON:0001893;9.46e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004907,1.45e-11,5;UBERON:0007023,3.26e-11,114;UBERON:0000160,5.34e-11,17;UBERON:0000059,1.03e-10,11;UBERON:0001049,1.19e-10,56;UBERON:0005068,1.19e-10,56;UBERON:0006241,1.19e-10,56;UBERON:0007135,1.19e-10,56;UBERON:0003075,1.77e-10,82;UBERON:0007284,1.77e-10,82;UBERON:0003528,1.87e-10,34;UBERON:0002020,1.87e-10,34;UBERON:0011216,6.14e-10,223;UBERON:0002619,8.07e-10,22;UBERON:0000073,8.11e-10,53;UBERON:0002616,8.11e-10,53;UBERON:0002346,8.80e-10,86;UBERON:0002791,1.91e-09,32;UBERON:0001869,1.91e-09,32;UBERON:0000955,4.18e-09,68;UBERON:0006238,4.18e-09,68;UBERON:0001016,4.20e-09,89;UBERON:0005409,5.04e-09,25;UBERON:0001052,7.20e-09,4;UBERON:0001893,8.84e-09,34;UBERON:0001950,1.41e-08,20;UBERON:0000956,1.69e-08,25;UBERON:0000203,1.69e-08,25;UBERON:0010371,2.83e-08,104;UBERON:0001017,3.34e-08,81;UBERON:0002780,5.84e-07,41;UBERON:0001890,5.84e-07,41;UBERON:0003080,5.84e-07,41;UBERON:0006240,5.84e-07,41;UBERON:0003056,6.20e-07,61;UBERON:0002771,6.64e-07,2 | |||
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| |||
|short_description=p6@PTCH1 | |||
}} |
Revision as of 09:55, 14 September 2013
Short description: | p6@PTCH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_PTCH1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000375274, ENST00000437951, ENST00000544247, NM_001083602, NM_001083603, uc004avm.3, uc004avo.2, uc010mrr.2, uc010mrv.1, uc010mrw.1_5end |
EntrezGene: | PTCH1 |
HGNC: | 9585 |
UniProt: | Q13635F5H3A7Q59FG5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lower digestive tract | 1.45e-11 | 5 |
adult organism | 3.26e-11 | 114 |
intestine | 5.34e-11 | 17 |
large intestine | 1.03e-10 | 11 |
neural tube | 1.19e-10 | 56 |
neural rod | 1.19e-10 | 56 |
future spinal cord | 1.19e-10 | 56 |
neural keel | 1.19e-10 | 56 |
neural plate | 1.77e-10 | 82 |
presumptive neural plate | 1.77e-10 | 82 |
brain grey matter | 1.87e-10 | 34 |
gray matter | 1.87e-10 | 34 |
organ system subdivision | 6.14e-10 | 223 |
regional part of cerebral cortex | 8.07e-10 | 22 |
regional part of nervous system | 8.11e-10 | 53 |
regional part of brain | 8.11e-10 | 53 |
neurectoderm | 8.80e-10 | 86 |
regional part of telencephalon | 1.91e-09 | 32 |
cerebral hemisphere | 1.91e-09 | 32 |
brain | 4.18e-09 | 68 |
future brain | 4.18e-09 | 68 |
nervous system | 4.20e-09 | 89 |
gastrointestinal system | 5.04e-09 | 25 |
rectum | 7.20e-09 | 4 |
telencephalon | 8.84e-09 | 34 |
neocortex | 1.41e-08 | 20 |
cerebral cortex | 1.69e-08 | 25 |
pallium | 1.69e-08 | 25 |
ecto-epithelium | 2.83e-08 | 104 |
central nervous system | 3.34e-08 | 81 |
regional part of forebrain | 5.84e-07 | 41 |
forebrain | 5.84e-07 | 41 |
anterior neural tube | 5.84e-07 | 41 |
future forebrain | 5.84e-07 | 41 |
pre-chordal neural plate | 6.20e-07 | 61 |
middle temporal gyrus | 6.64e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 7.32e-07 | 8 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.