FFCP PHASE1:Hg19::chr6:53013605..53013616,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8521|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4197|TSSclassifier=S|UniProt=Q9NP62|association_with_transcript=7bp_to_NM_003643,uc003pbp.2,uc010jzr.2_5end|coexpression_cluster_id=C50|description=CAGE_peak_2_at_GCM1_5end|id=chr6:53013605..53013616,-|ontology_enrichment_celltype=CL:0002541!1.11e-34!3;CL:0000039!4.81e-15!7;CL:0000586!4.81e-15!7;CL:0002563!7.52e-12!4;CL:0002253!9.02e-07!2|ontology_enrichment_celltype_v019=CL:0002541;3.30e-60;3!CL:0000349;3.93e-17;19!CL:0000039;2.24e-12;7!CL:0000586;2.24e-12;7|ontology_enrichment_celltype_v019_2=CL:0002541,2.98e-60,3;CL:0000349,3.93e-17,19;CL:0000039,2.24e-12,7;CL:0000586,2.24e-12,7|ontology_enrichment_development_v019=UBERON:0003124;1.88e-21;1|ontology_enrichment_disease=DOID:1799!1.96e-12!1;DOID:10165!1.96e-12!1;DOID:1798!1.96e-12!1|ontology_enrichment_disease_v019=DOID:1799;9.43e-21;1!DOID:10165;9.43e-21;1!DOID:1798;9.43e-21;1|ontology_enrichment_disease_v019_2=DOID:1799,9.43e-21,1;DOID:10165,9.43e-21,1;DOID:1798,9.43e-21,1|ontology_enrichment_uberon=UBERON:0000476!1.11e-34!3;UBERON:0000920!1.11e-34!3;UBERON:0003124!2.75e-26!7;UBERON:0005631!3.51e-20!14;UBERON:0000158!3.51e-20!14;UBERON:0001000!2.46e-12!1;UBERON:0005352!2.46e-12!1;UBERON:0001242!7.52e-12!4;UBERON:0001262!7.52e-12!4;UBERON:0004786!7.52e-12!4;UBERON:0004808!7.52e-12!4;UBERON:0001277!7.52e-12!4;UBERON:0000478!9.47e-12!24;UBERON:0003350!1.16e-09!5;UBERON:0004923!5.44e-09!57|ontology_enrichment_uberon_v019=UBERON:0003124;3.30e-60;3!UBERON:0000920;3.30e-60;3!UBERON:0005631;4.32e-32;10!UBERON:0000158;4.32e-32;10!UBERON:0000478;6.87e-21;24|ontology_enrichment_uberon_v019_2=UBERON:0000920,2.98e-60,3;UBERON:0003124,6.29e-46,7;UBERON:0005631,1.36e-35,14;UBERON:0000158,1.36e-35,14;UBERON:0000478,6.87e-21,24;UBERON:0004923,1.12e-07,66|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.87333766392017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.02520324971387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.72986763370456,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.91424788868659,9.42455266302607,0.434589487688032,16.5880603060598,6.41183153813036,27.717808352969,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30953347240711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.3371166954553,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p2@GCM1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=8521 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4197 | |||
|TSSclassifier=S | |||
|UniProt=Q9NP62 | |||
|association_with_transcript=7bp_to_NM_003643,uc003pbp.2,uc010jzr.2_5end | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_2_at_GCM1_5end | |||
|id=chr6:53013605..53013616,- | |||
|ontology_enrichment_celltype=CL:0002541!1.11e-34!3;CL:0000039!4.81e-15!7;CL:0000586!4.81e-15!7;CL:0002563!7.52e-12!4;CL:0002253!9.02e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0002541;3.30e-60;3!CL:0000349;3.93e-17;19!CL:0000039;2.24e-12;7!CL:0000586;2.24e-12;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,2.98e-60,3;CL:0000349,3.93e-17,19;CL:0000039,2.24e-12,7;CL:0000586,2.24e-12,7 | |||
|ontology_enrichment_development_v019=UBERON:0003124;1.88e-21;1 | |||
|ontology_enrichment_disease=DOID:1799!1.96e-12!1;DOID:10165!1.96e-12!1;DOID:1798!1.96e-12!1 | |||
|ontology_enrichment_disease_v019=DOID:1799;9.43e-21;1!DOID:10165;9.43e-21;1!DOID:1798;9.43e-21;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,9.43e-21,1;DOID:10165,9.43e-21,1;DOID:1798,9.43e-21,1 | |||
|ontology_enrichment_uberon=UBERON:0000476!1.11e-34!3;UBERON:0000920!1.11e-34!3;UBERON:0003124!2.75e-26!7;UBERON:0005631!3.51e-20!14;UBERON:0000158!3.51e-20!14;UBERON:0001000!2.46e-12!1;UBERON:0005352!2.46e-12!1;UBERON:0001242!7.52e-12!4;UBERON:0001262!7.52e-12!4;UBERON:0004786!7.52e-12!4;UBERON:0004808!7.52e-12!4;UBERON:0001277!7.52e-12!4;UBERON:0000478!9.47e-12!24;UBERON:0003350!1.16e-09!5;UBERON:0004923!5.44e-09!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;3.30e-60;3!UBERON:0000920;3.30e-60;3!UBERON:0005631;4.32e-32;10!UBERON:0000158;4.32e-32;10!UBERON:0000478;6.87e-21;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,2.98e-60,3;UBERON:0003124,6.29e-46,7;UBERON:0005631,1.36e-35,14;UBERON:0000158,1.36e-35,14;UBERON:0000478,6.87e-21,24;UBERON:0004923,1.12e-07,66 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.87333766392017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.02520324971387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.72986763370456,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.91424788868659,9.42455266302607,0.434589487688032,16.5880603060598,6.41183153813036,27.717808352969,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30953347240711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.3371166954553,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@GCM1 | |||
}} |
Revision as of 21:24, 13 September 2013
Short description: | p2@GCM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_GCM1_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | 7bp_to_NM_003643, uc003pbp.2, uc010jzr.2_5end |
EntrezGene: | GCM1 |
HGNC: | 4197 |
UniProt: | Q9NP62 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 2.98e-60 | 3 |
extraembryonic cell | 3.93e-17 | 19 |
germ line cell | 2.24e-12 | 7 |
germ cell | 2.24e-12 | 7 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 2.98e-60 | 3 |
chorion | 6.29e-46 | 7 |
extraembryonic membrane | 1.36e-35 | 14 |
membranous layer | 1.36e-35 | 14 |
extraembryonic structure | 6.87e-21 | 24 |
organ component layer | 1.12e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 9.43e-21 | 1 |
endocrine pancreas cancer | 9.43e-21 | 1 |
pancreatic endocrine carcinoma | 9.43e-21 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.