FFCP PHASE1:Hg19::chr5:76011801..76011810,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2149|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3537|TSSclassifier=S|UniProt=P25116,Q2TNB2|association_with_transcript=-57bp_to_ENST00000319211,NM_001992,uc003ken.3_5end|description=CAGE_peak_4_at_F2R_5end|id=chr5:76011801..76011810,+|ontology_enrichment_celltype=CL:0000055!2.81e-23!180;CL:0000057!1.19e-17!75;CL:0002371!5.70e-14!591;CL:0000222!2.67e-13!119;CL:0000144!1.23e-12!625;CL:0000220!1.20e-11!246;CL:0002321!3.48e-11!248;CL:0002334!5.30e-09!12;CL:0002139!2.00e-08!24;CL:0000183!2.63e-08!59;CL:0000071!2.82e-08!18;CL:0002546!2.82e-08!18;CL:0000680!5.08e-08!57;CL:0000056!5.08e-08!57;CL:0000355!5.08e-08!57;CL:0000187!1.16e-07!54;CL:0000548!1.27e-07!679;CL:0000004!1.27e-07!679;CL:0000255!1.27e-07!679;CL:0000115!3.34e-07!35;CL:0000012!3.62e-07!682|ontology_enrichment_celltype_v019=CL:0002334;2.35e-14;12!CL:0002556;1.16e-08;6!CL:0000057;1.00e-07;73!CL:0000071;1.43e-07;18!CL:0002543;2.32e-07;6!CL:0000115;5.93e-07;36!CL:0002139;6.94e-07;24|ontology_enrichment_celltype_v019_2=CL:0000057,1.64e-17,76;CL:0002334,1.86e-14,12;CL:0000048,1.09e-09,427;CL:0000723,3.81e-09,433;CL:0002556,1.19e-08,6;CL:0000034,1.88e-08,441;CL:0000222,2.15e-08,121;CL:0000071,4.91e-08,18;CL:0002546,4.91e-08,18;CL:0002543,6.28e-08,6;CL:0000115,1.20e-07,36;CL:0002139,3.02e-07,24;CL:0002552,4.80e-07,5|ontology_enrichment_development_v019=CL:0002546;1.43e-07;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2394;2.03e-08;14|ontology_enrichment_disease_v019_2=DOID:2394,3.99e-09,14|ontology_enrichment_uberon=UBERON:0004872!1.98e-13!84;UBERON:0002049!2.02e-13!79;UBERON:0007798!2.02e-13!79;UBERON:0003914!5.68e-13!118;UBERON:0001009!4.72e-12!113;UBERON:0000914!1.65e-11!83;UBERON:0002329!1.65e-11!83;UBERON:0003077!1.65e-11!83;UBERON:0003059!1.65e-11!83;UBERON:0007282!1.65e-11!83;UBERON:0009618!1.65e-11!83;UBERON:0007285!1.65e-11!83;UBERON:0004535!1.78e-11!110;UBERON:0000055!7.82e-11!69;UBERON:0000490!1.32e-10!138;UBERON:0005256!1.33e-10!143;UBERON:0001981!4.75e-10!60;UBERON:0007500!4.75e-10!60;UBERON:0004537!4.75e-10!60;UBERON:0006965!4.75e-10!60;UBERON:0000475!1.57e-09!365;UBERON:0002100!3.00e-09!216;UBERON:0001444!3.95e-09!48;UBERON:0004290!6.99e-09!70;UBERON:0003102!1.86e-08!95;UBERON:0001986!2.82e-08!18;UBERON:0004638!2.82e-08!18;UBERON:0004852!2.82e-08!18;UBERON:0000119!5.17e-08!312;UBERON:0000486!5.28e-08!82;UBERON:0000483!1.48e-07!309;UBERON:0001134!2.17e-07!61;UBERON:0002036!2.17e-07!61;UBERON:0003082!2.17e-07!61;UBERON:0000487!3.24e-07!22;UBERON:0007100!3.43e-07!27;UBERON:0000477!4.59e-07!286;UBERON:0002385!5.06e-07!63;UBERON:0001015!5.06e-07!63;UBERON:0000383!5.06e-07!63;UBERON:0000481!7.12e-07!347|ontology_enrichment_uberon_v019=UBERON:0003688;4.74e-09;6!UBERON:0002358;4.74e-09;6!UBERON:0003684;4.74e-09;6!UBERON:0001178;4.74e-09;6!UBERON:0001758;1.16e-08;6!UBERON:0003672;1.16e-08;6!UBERON:0004638;1.43e-07;18!UBERON:0001986;1.43e-07;18!UBERON:0004852;1.43e-07;18!UBERON:0003129;3.17e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0004872,9.95e-12,83;UBERON:0003914,7.85e-11,117;UBERON:0004535,2.80e-10,109;UBERON:0001009,2.98e-10,112;UBERON:0002049,5.56e-10,78;UBERON:0007798,5.56e-10,78;UBERON:0003688,6.91e-09,6;UBERON:0002358,6.91e-09,6;UBERON:0003684,6.91e-09,6;UBERON:0001178,6.91e-09,6;UBERON:0004923,6.96e-09,66;UBERON:0001758,1.19e-08,6;UBERON:0003672,1.19e-08,6;UBERON:0007500,2.28e-08,59;UBERON:0001981,2.28e-08,59;UBERON:0004537,2.28e-08,59;UBERON:0006965,2.28e-08,59;UBERON:0000055,2.47e-08,68;UBERON:0000490,2.51e-08,148;UBERON:0002100,3.86e-08,199;UBERON:0004638,4.91e-08,18;UBERON:0001986,4.91e-08,18;UBERON:0004852,4.91e-08,18;UBERON:0007503,1.33e-07,78;UBERON:0003129,3.23e-07,7;UBERON:0000487,6.28e-07,22;UBERON:0000926,7.77e-07,315;UBERON:0004120,7.77e-07,315;UBERON:0006603,7.77e-07,315|phase1_expression=3.45188920614058,1.71280419112787,4.36958652697511,3.00219895059391,4.02264984984559,5.23403114460221,0,0.631719873426831,0,1.22866968250754,0,0,0,0.495065411840187,0.331397375727916,0,0.602694528023977,0,0.487932798790507,0.61560529038394,1.42800483870977,0.940364164434263,0.286235987131057,0.684372125364421,1.12988375635323,0.0764134057479513,0.164201178899891,0.157421562627358,0,0.383829398097213,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0.639337125799041,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954053754535364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.390178042679635,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0.821127996921047,0,0,0,4.87613732627923,1.34140171940727,1.79007586580942,0,0,0.144846518960824,0,0,1.22895262313288,0.886917589850256,1.22968699970376,0.130979075497713,0.728590576585084,0.370784442784429,0,0,0,0,0,0,0.79504962946682,0.860234595106124,3.12426451446835,2.82653970962005,0.838998872419812,1.6507082516404,1.67195973229448,1.29208379584664,0.71153252537342,2.67776490211736,0.805658634218294,0.760272105718513,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2149 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3537 | |||
|TSSclassifier=S | |||
|UniProt=P25116,Q2TNB2 | |||
|association_with_transcript=-57bp_to_ENST00000319211,NM_001992,uc003ken.3_5end | |||
|description=CAGE_peak_4_at_F2R_5end | |||
|id=chr5:76011801..76011810,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.81e-23!180;CL:0000057!1.19e-17!75;CL:0002371!5.70e-14!591;CL:0000222!2.67e-13!119;CL:0000144!1.23e-12!625;CL:0000220!1.20e-11!246;CL:0002321!3.48e-11!248;CL:0002334!5.30e-09!12;CL:0002139!2.00e-08!24;CL:0000183!2.63e-08!59;CL:0000071!2.82e-08!18;CL:0002546!2.82e-08!18;CL:0000680!5.08e-08!57;CL:0000056!5.08e-08!57;CL:0000355!5.08e-08!57;CL:0000187!1.16e-07!54;CL:0000548!1.27e-07!679;CL:0000004!1.27e-07!679;CL:0000255!1.27e-07!679;CL:0000115!3.34e-07!35;CL:0000012!3.62e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:0002334;2.35e-14;12!CL:0002556;1.16e-08;6!CL:0000057;1.00e-07;73!CL:0000071;1.43e-07;18!CL:0002543;2.32e-07;6!CL:0000115;5.93e-07;36!CL:0002139;6.94e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.64e-17,76;CL:0002334,1.86e-14,12;CL:0000048,1.09e-09,427;CL:0000723,3.81e-09,433;CL:0002556,1.19e-08,6;CL:0000034,1.88e-08,441;CL:0000222,2.15e-08,121;CL:0000071,4.91e-08,18;CL:0002546,4.91e-08,18;CL:0002543,6.28e-08,6;CL:0000115,1.20e-07,36;CL:0002139,3.02e-07,24;CL:0002552,4.80e-07,5 | |||
|ontology_enrichment_development_v019=CL:0002546;1.43e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;2.03e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.99e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0004872!1.98e-13!84;UBERON:0002049!2.02e-13!79;UBERON:0007798!2.02e-13!79;UBERON:0003914!5.68e-13!118;UBERON:0001009!4.72e-12!113;UBERON:0000914!1.65e-11!83;UBERON:0002329!1.65e-11!83;UBERON:0003077!1.65e-11!83;UBERON:0003059!1.65e-11!83;UBERON:0007282!1.65e-11!83;UBERON:0009618!1.65e-11!83;UBERON:0007285!1.65e-11!83;UBERON:0004535!1.78e-11!110;UBERON:0000055!7.82e-11!69;UBERON:0000490!1.32e-10!138;UBERON:0005256!1.33e-10!143;UBERON:0001981!4.75e-10!60;UBERON:0007500!4.75e-10!60;UBERON:0004537!4.75e-10!60;UBERON:0006965!4.75e-10!60;UBERON:0000475!1.57e-09!365;UBERON:0002100!3.00e-09!216;UBERON:0001444!3.95e-09!48;UBERON:0004290!6.99e-09!70;UBERON:0003102!1.86e-08!95;UBERON:0001986!2.82e-08!18;UBERON:0004638!2.82e-08!18;UBERON:0004852!2.82e-08!18;UBERON:0000119!5.17e-08!312;UBERON:0000486!5.28e-08!82;UBERON:0000483!1.48e-07!309;UBERON:0001134!2.17e-07!61;UBERON:0002036!2.17e-07!61;UBERON:0003082!2.17e-07!61;UBERON:0000487!3.24e-07!22;UBERON:0007100!3.43e-07!27;UBERON:0000477!4.59e-07!286;UBERON:0002385!5.06e-07!63;UBERON:0001015!5.06e-07!63;UBERON:0000383!5.06e-07!63;UBERON:0000481!7.12e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;4.74e-09;6!UBERON:0002358;4.74e-09;6!UBERON:0003684;4.74e-09;6!UBERON:0001178;4.74e-09;6!UBERON:0001758;1.16e-08;6!UBERON:0003672;1.16e-08;6!UBERON:0004638;1.43e-07;18!UBERON:0001986;1.43e-07;18!UBERON:0004852;1.43e-07;18!UBERON:0003129;3.17e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004872,9.95e-12,83;UBERON:0003914,7.85e-11,117;UBERON:0004535,2.80e-10,109;UBERON:0001009,2.98e-10,112;UBERON:0002049,5.56e-10,78;UBERON:0007798,5.56e-10,78;UBERON:0003688,6.91e-09,6;UBERON:0002358,6.91e-09,6;UBERON:0003684,6.91e-09,6;UBERON:0001178,6.91e-09,6;UBERON:0004923,6.96e-09,66;UBERON:0001758,1.19e-08,6;UBERON:0003672,1.19e-08,6;UBERON:0007500,2.28e-08,59;UBERON:0001981,2.28e-08,59;UBERON:0004537,2.28e-08,59;UBERON:0006965,2.28e-08,59;UBERON:0000055,2.47e-08,68;UBERON:0000490,2.51e-08,148;UBERON:0002100,3.86e-08,199;UBERON:0004638,4.91e-08,18;UBERON:0001986,4.91e-08,18;UBERON:0004852,4.91e-08,18;UBERON:0007503,1.33e-07,78;UBERON:0003129,3.23e-07,7;UBERON:0000487,6.28e-07,22;UBERON:0000926,7.77e-07,315;UBERON:0004120,7.77e-07,315;UBERON:0006603,7.77e-07,315 | |||
|phase1_expression=3.45188920614058,1.71280419112787,4.36958652697511,3.00219895059391,4.02264984984559,5.23403114460221,0,0.631719873426831,0,1.22866968250754,0,0,0,0.495065411840187,0.331397375727916,0,0.602694528023977,0,0.487932798790507,0.61560529038394,1.42800483870977,0.940364164434263,0.286235987131057,0.684372125364421,1.12988375635323,0.0764134057479513,0.164201178899891,0.157421562627358,0,0.383829398097213,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0.639337125799041,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954053754535364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.390178042679635,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0.821127996921047,0,0,0,4.87613732627923,1.34140171940727,1.79007586580942,0,0,0.144846518960824,0,0,1.22895262313288,0.886917589850256,1.22968699970376,0.130979075497713,0.728590576585084,0.370784442784429,0,0,0,0,0,0,0.79504962946682,0.860234595106124,3.12426451446835,2.82653970962005,0.838998872419812,1.6507082516404,1.67195973229448,1.29208379584664,0.71153252537342,2.67776490211736,0.805658634218294,0.760272105718513,0,3.30896772311282,3.24056779152704,1.87529429396568,2.91888184414021,3.71617885594963,3.06633274931766,1.89853131913626,3.66403487860815,0,0,1.3082821564276,2.48485975847659,2.02608818663328,1.58891016975863,6.3104056564739,1.06400514659507,0.560677600142307,1.06748995729705,0.98667019366864,3.42332138939743,1.48181739276657,3.75962377160955,1.36221684880438,0.576175924479999,0.937285727335186,1.5608003841516,1.71141546463335,1.34503812496621,0.704606991862589,0.647491777472526,0.702254033511242,3.0623125688234,1.96534907698829,4.02970546585485,8.31602000097437,1.97813543422845,1.82032272387605,0,2.69337782326506,3.62843707628696,6.09541054065202,5.26773145057006,2.14541457059314,4.5071417671979,1.58805056424029,0.717558542755448,0.427114777637135,0,0,0.206105058476878,0.257640540045629,0.930584281657949,1.35021065793013,0.292311015483596,0,0.0920498986422993,0.323292113637624,1.77504796258307,0.806016785821122,1.18692414617341,0.57978255948989,0.545492241181669,0.573609190778008,0,0,0,0.10366105501537,0,0,1.56449532329816,0.643240938192885,0,1.85747171212792,0,0,0,0,0,0.217879444092406,0,0,0,0,2.21446636387394,1.40241773803446,0.4115740113314,0,0,0,0.590789906681404,0,0,0.857839051492628,0.439001141634502,0,0.100528972411631,0.648119116109707,0.977424915930974,0,1.44331342025273,0.579652024875384,1.52631302506568,0.721832238805369,0,0.190254152234598,0,0,0,0,0,0,0.503946384596579,0.567100388969546,0.0895585227028483,0,0.383382679165211,1.97065295158377,0.352193736052904,0.414656231081544,0,0.12624243342638,0.126995788584338,0,0,0,1.13110241973656,0,0,0.784917590417525,0.87192013766656,1.0267360014933,0.129271715757778,0,2.535908257668,1.86156681609409,1.04007436911366,0.514414748524284,1.41849132023278,0.266422179016099,2.7165818795048,0,0,0.977208552881205,1.77695974371273,0,0.301439377059586,0.871533458600294,0.499864955910285,0,0,0,0.718874566474748,0,1.42636905040718,0.868687840005475,0.821905290201534,0.179060963239896,0.112085143993527,0,0,0.128343036279748,0.508189248444927,0,0.773288812777695,0.335032530668698,0,0,0,0,0.736148950314839,0.500170521059677,1.62759014219841,0.831883446123229,0.713715955188647,0.315404830067869,0.702848489956279,1.20378439891088,4.5481500811197,2.0694614258501,0.664225598535437,1.47495334833363,1.21637060255316,0.195801157462741,0,0,0,0,0,0,0,4.96215615637554,4.29693525206575,4.49056151092918,4.86928767171664,3.07024349440022,6.27330292460069,1.48418066444991,1.69630663182921,2.48586415438378,2.62806899244189,2.07701771673448,2.67283870457906,0,0.601519410909855,0,1.7222167224691,2.73136752010076,1.04899531967539,0.451199612907412,0.924184045252977,0,0,1.16106791782163,1.13733384070897,2.72149928442425,4.75015015424707,0,2.70946437543853,1.00337954770971,0.254876273045038,0,1.11937377361089,0,0,1.28225062558195,4.26419039409617,1.95227036798582,0.412164046590889,0.27470839445503,0.495056999523528,0.574265537996172,0.650060246036521,0,0.96670718292122,1.69453478826109,1.68854042198743,0.551346289938122,0.429680979473094,1.88521702088497,1.27839941124151,0.712256285173899,0.165284915360978,0.384380134730212,0.382838137483752,0.10115778085555,0,2.20368642781448,0.6970372701606,0.924100740528266,1.06461206063404,0,0.9266210955196,1.14499909393593,1.116475108079,1.58189712359363,2.09693213316207,3.32667128704734,8.55877976067841,2.22742273548156,1.56989728039846,0.359744915166629,1.64722217841633,1.41374882814824,0.808729926293264,0,0,0.48763373908959,0.731140468893853,0,1.63799893689583,1.97967604735198,1.13008116620243,1.10273068709225,0,0.876901770507525,2.31510213706675,3.9353685122798,0,0.30982349809975,0,0.430234056612155,0.196498082026242,0.35667105148125,0,0.211107635297664,0,0.379473173765715,0.699869440489966,0.192444225451024,0,0,0.282431402330337,0.86101074534246,0,0.443430153536676,0.229723400206959,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| |||
|short_description=p4@F2R | |||
}} |
Revision as of 16:28, 13 September 2013
Short description: | p4@F2R |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_F2R_5end |
Coexpression cluster: | NA |
Association with transcript: | -57bp_to_ENST00000319211, NM_001992, uc003ken.3_5end |
EntrezGene: | F2R |
HGNC: | 3537 |
UniProt: | P25116Q2TNB2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.64e-17 | 76 |
preadipocyte | 1.86e-14 | 12 |
multi fate stem cell | 1.09e-09 | 427 |
somatic stem cell | 3.81e-09 | 433 |
fibroblast of periodontium | 1.19e-08 | 6 |
stem cell | 1.88e-08 | 441 |
mesodermal cell | 2.15e-08 | 121 |
blood vessel endothelial cell | 4.91e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.91e-08 | 18 |
vein endothelial cell | 6.28e-08 | 6 |
endothelial cell | 1.20e-07 | 36 |
endothelial cell of vascular tree | 3.02e-07 | 24 |
fibroblast of gingiva | 4.80e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
splanchnic layer of lateral plate mesoderm | 9.95e-12 | 83 |
epithelial tube | 7.85e-11 | 117 |
cardiovascular system | 2.80e-10 | 109 |
circulatory system | 2.98e-10 | 112 |
vasculature | 5.56e-10 | 78 |
vascular system | 5.56e-10 | 78 |
omentum | 6.91e-09 | 6 |
peritoneum | 6.91e-09 | 6 |
abdominal cavity | 6.91e-09 | 6 |
visceral peritoneum | 6.91e-09 | 6 |
organ component layer | 6.96e-09 | 66 |
periodontium | 1.19e-08 | 6 |
dentition | 1.19e-08 | 6 |
epithelial tube open at both ends | 2.28e-08 | 59 |
blood vessel | 2.28e-08 | 59 |
blood vasculature | 2.28e-08 | 59 |
vascular cord | 2.28e-08 | 59 |
vessel | 2.47e-08 | 68 |
unilaminar epithelium | 2.51e-08 | 148 |
trunk | 3.86e-08 | 199 |
blood vessel endothelium | 4.91e-08 | 18 |
endothelium | 4.91e-08 | 18 |
cardiovascular system endothelium | 4.91e-08 | 18 |
epithelial vesicle | 1.33e-07 | 78 |
skull | 3.23e-07 | 7 |
simple squamous epithelium | 6.28e-07 | 22 |
mesoderm | 7.77e-07 | 315 |
mesoderm-derived structure | 7.77e-07 | 315 |
presumptive mesoderm | 7.77e-07 | 315 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.99e-09 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.