FFCP PHASE1:Hg19::chr5:71853090..71853107,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C381|description=CAGE_peak_at_chr5:71853090..71853107,+|id=chr5:71853090..71853107,+|ontology_enrichment_celltype=CL:0002139!1.47e-42!24;CL:0000115!1.15e-38!35;CL:0000071!2.08e-30!18;CL:0002546!2.08e-30!18;CL:0002078!5.24e-29!44;CL:0000213!1.67e-20!57;CL:0000215!1.67e-20!57;CL:0000222!7.27e-18!119;CL:0002543!2.00e-14!6;CL:0005020!9.70e-14!6;CL:0002138!9.70e-14!6;CL:0005022!9.70e-14!6;CL:1000413!5.41e-12!9;CL:0002544!6.00e-10!6;CL:0002618!3.37e-08!3;CL:0002144!6.48e-08!3|ontology_enrichment_celltype_v019=CL:0002139;1.55e-97;24!CL:0000115;2.69e-73;36!CL:0000071;1.29e-68;18!CL:0002078;3.00e-45;45!CL:0002543;6.60e-45;6!CL:0000213;8.07e-32;58!CL:0000215;8.07e-32;58!CL:0002138;2.81e-30;6!CL:0002618;8.15e-24;3!CL:1000413;5.45e-21;9!CL:0002544;9.26e-21;6!CL:0000076;4.31e-12;63!CL:0002144;3.27e-11;3|ontology_enrichment_celltype_v019_2=CL:0002139,2.53e-97,24;CL:0000115,1.36e-87,36;CL:0002078,2.31e-69,45;CL:0000071,1.61e-68,18;CL:0002546,1.61e-68,18;CL:0000213,5.24e-53,58;CL:0000215,5.24e-53,58;CL:0002543,6.39e-45,6;CL:0005020,3.72e-30,6;CL:0002138,3.72e-30,6;CL:0005022,3.72e-30,6;CL:0002618,7.29e-24,3;CL:0000222,1.80e-23,121;CL:1000413,6.85e-21,9;CL:0002544,9.28e-21,6;CL:0000076,6.71e-18,63;CL:0002144,3.11e-11,3;CL:0002321,2.96e-09,250;CL:0000066,3.33e-09,253;CL:0002188,8.92e-07,5|ontology_enrichment_development_v019=CL:0002546;1.29e-68;18!CL:0005022;2.81e-30;6!CL:0000222;5.27e-10;121|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001986!2.08e-30!18;UBERON:0004638!2.08e-30!18;UBERON:0004852!2.08e-30!18;UBERON:0000487!5.75e-24!22;UBERON:0006914!1.69e-20!25;UBERON:0002049!6.84e-16!79;UBERON:0007798!6.84e-16!79;UBERON:0000055!2.68e-15!69;UBERON:0004535!6.04e-13!110;UBERON:0001009!2.34e-12!113;UBERON:0003915!5.41e-12!9;UBERON:0004700!5.41e-12!9;UBERON:0001917!5.41e-12!9;UBERON:0004872!6.86e-12!84;UBERON:0001473!4.64e-10!8;UBERON:0004536!4.64e-10!8;UBERON:0006558!4.64e-10!8;UBERON:0000490!5.38e-10!138;UBERON:0001981!5.96e-10!60;UBERON:0007500!5.96e-10!60;UBERON:0004537!5.96e-10!60;UBERON:0006965!5.96e-10!60;UBERON:0001638!2.85e-09!9;UBERON:0003920!2.85e-09!9;UBERON:0004582!2.85e-09!9;UBERON:0003914!6.43e-09!118;UBERON:0000483!1.33e-08!309;UBERON:0000119!2.19e-08!312;UBERON:0001915!6.48e-08!3;UBERON:0001982!6.48e-08!3;UBERON:0002465!7.43e-08!10;UBERON:0000468!9.26e-08!659;UBERON:0004111!3.31e-07!241;UBERON:0000467!3.72e-07!625;UBERON:0000480!4.14e-07!626;UBERON:0000477!5.11e-07!286|ontology_enrichment_uberon_v019=UBERON:0004638;1.29e-68;18!UBERON:0001986;1.29e-68;18!UBERON:0004852;1.29e-68;18!UBERON:0000487;9.92e-56;22!UBERON:0006914;9.09e-49;25!UBERON:0000490;1.50e-32;33!UBERON:0001638;8.02e-30;9!UBERON:0003920;8.02e-30;9!UBERON:0004582;8.02e-30;9!UBERON:0001473;1.06e-22;8!UBERON:0004536;1.06e-22;8!UBERON:0006558;1.06e-22;8!UBERON:0000055;1.42e-22;65!UBERON:0003915;5.45e-21;9!UBERON:0004700;5.45e-21;9!UBERON:0001917;5.45e-21;9!UBERON:0002465;3.80e-18;10!UBERON:0007500;5.64e-16;56!UBERON:0001981;5.64e-16;56!UBERON:0004537;5.64e-16;56!UBERON:0002066;1.59e-14;5!UBERON:0002049;3.98e-14;75!UBERON:0007798;3.98e-14;75!UBERON:0004535;1.43e-12;109!UBERON:0010523;3.27e-11;3!UBERON:0001915;3.27e-11;3!UBERON:0001982;3.27e-11;3!UBERON:0003914;6.46e-11;74!UBERON:0001009;1.11e-09;112!UBERON:0000025;2.66e-09;93!UBERON:0010260;2.76e-08;9!UBERON:0004111;1.04e-07;130|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.61e-68,18;UBERON:0001986,1.61e-68,18;UBERON:0004852,1.61e-68,18;UBERON:0000487,1.19e-55,22;UBERON:0006914,1.07e-48,25;UBERON:0000055,3.00e-36,68;UBERON:0002049,3.70e-31,78;UBERON:0007798,3.70e-31,78;UBERON:0001638,7.85e-30,9;UBERON:0003920,7.85e-30,9;UBERON:0004582,7.85e-30,9;UBERON:0004535,1.99e-26,109;UBERON:0001009,1.28e-25,112;UBERON:0001473,1.30e-22,8;UBERON:0004536,1.30e-22,8;UBERON:0006558,1.30e-22,8;UBERON:0007500,1.47e-22,59;UBERON:0001981,1.47e-22,59;UBERON:0004537,1.47e-22,59;UBERON:0006965,1.47e-22,59;UBERON:0003915,6.85e-21,9;UBERON:0004700,6.85e-21,9;UBERON:0001917,6.85e-21,9;UBERON:0004872,3.36e-20,83;UBERON:0003914,1.47e-19,117;UBERON:0002465,4.48e-18,10;UBERON:0002066,1.49e-14,5;UBERON:0004111,1.08e-13,240;UBERON:0010523,3.11e-11,3;UBERON:0001915,3.11e-11,3;UBERON:0001982,3.11e-11,3;UBERON:0003081,5.57e-11,203;UBERON:0000025,1.89e-10,192;UBERON:0000490,1.22e-08,148;UBERON:0010260,2.66e-08,9|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29096936716765,0,0,0,0,0.306083892370903,0,0,0,0.199463657621632,0,0,0,0,0.251248665256743,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C381 | |||
|description=CAGE_peak_at_chr5:71853090..71853107,+ | |||
|id=chr5:71853090..71853107,+ | |||
|ontology_enrichment_celltype=CL:0002139!1.47e-42!24;CL:0000115!1.15e-38!35;CL:0000071!2.08e-30!18;CL:0002546!2.08e-30!18;CL:0002078!5.24e-29!44;CL:0000213!1.67e-20!57;CL:0000215!1.67e-20!57;CL:0000222!7.27e-18!119;CL:0002543!2.00e-14!6;CL:0005020!9.70e-14!6;CL:0002138!9.70e-14!6;CL:0005022!9.70e-14!6;CL:1000413!5.41e-12!9;CL:0002544!6.00e-10!6;CL:0002618!3.37e-08!3;CL:0002144!6.48e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.55e-97;24!CL:0000115;2.69e-73;36!CL:0000071;1.29e-68;18!CL:0002078;3.00e-45;45!CL:0002543;6.60e-45;6!CL:0000213;8.07e-32;58!CL:0000215;8.07e-32;58!CL:0002138;2.81e-30;6!CL:0002618;8.15e-24;3!CL:1000413;5.45e-21;9!CL:0002544;9.26e-21;6!CL:0000076;4.31e-12;63!CL:0002144;3.27e-11;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,2.53e-97,24;CL:0000115,1.36e-87,36;CL:0002078,2.31e-69,45;CL:0000071,1.61e-68,18;CL:0002546,1.61e-68,18;CL:0000213,5.24e-53,58;CL:0000215,5.24e-53,58;CL:0002543,6.39e-45,6;CL:0005020,3.72e-30,6;CL:0002138,3.72e-30,6;CL:0005022,3.72e-30,6;CL:0002618,7.29e-24,3;CL:0000222,1.80e-23,121;CL:1000413,6.85e-21,9;CL:0002544,9.28e-21,6;CL:0000076,6.71e-18,63;CL:0002144,3.11e-11,3;CL:0002321,2.96e-09,250;CL:0000066,3.33e-09,253;CL:0002188,8.92e-07,5 | |||
|ontology_enrichment_development_v019=CL:0002546;1.29e-68;18!CL:0005022;2.81e-30;6!CL:0000222;5.27e-10;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!2.08e-30!18;UBERON:0004638!2.08e-30!18;UBERON:0004852!2.08e-30!18;UBERON:0000487!5.75e-24!22;UBERON:0006914!1.69e-20!25;UBERON:0002049!6.84e-16!79;UBERON:0007798!6.84e-16!79;UBERON:0000055!2.68e-15!69;UBERON:0004535!6.04e-13!110;UBERON:0001009!2.34e-12!113;UBERON:0003915!5.41e-12!9;UBERON:0004700!5.41e-12!9;UBERON:0001917!5.41e-12!9;UBERON:0004872!6.86e-12!84;UBERON:0001473!4.64e-10!8;UBERON:0004536!4.64e-10!8;UBERON:0006558!4.64e-10!8;UBERON:0000490!5.38e-10!138;UBERON:0001981!5.96e-10!60;UBERON:0007500!5.96e-10!60;UBERON:0004537!5.96e-10!60;UBERON:0006965!5.96e-10!60;UBERON:0001638!2.85e-09!9;UBERON:0003920!2.85e-09!9;UBERON:0004582!2.85e-09!9;UBERON:0003914!6.43e-09!118;UBERON:0000483!1.33e-08!309;UBERON:0000119!2.19e-08!312;UBERON:0001915!6.48e-08!3;UBERON:0001982!6.48e-08!3;UBERON:0002465!7.43e-08!10;UBERON:0000468!9.26e-08!659;UBERON:0004111!3.31e-07!241;UBERON:0000467!3.72e-07!625;UBERON:0000480!4.14e-07!626;UBERON:0000477!5.11e-07!286 | |||
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|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.61e-68,18;UBERON:0001986,1.61e-68,18;UBERON:0004852,1.61e-68,18;UBERON:0000487,1.19e-55,22;UBERON:0006914,1.07e-48,25;UBERON:0000055,3.00e-36,68;UBERON:0002049,3.70e-31,78;UBERON:0007798,3.70e-31,78;UBERON:0001638,7.85e-30,9;UBERON:0003920,7.85e-30,9;UBERON:0004582,7.85e-30,9;UBERON:0004535,1.99e-26,109;UBERON:0001009,1.28e-25,112;UBERON:0001473,1.30e-22,8;UBERON:0004536,1.30e-22,8;UBERON:0006558,1.30e-22,8;UBERON:0007500,1.47e-22,59;UBERON:0001981,1.47e-22,59;UBERON:0004537,1.47e-22,59;UBERON:0006965,1.47e-22,59;UBERON:0003915,6.85e-21,9;UBERON:0004700,6.85e-21,9;UBERON:0001917,6.85e-21,9;UBERON:0004872,3.36e-20,83;UBERON:0003914,1.47e-19,117;UBERON:0002465,4.48e-18,10;UBERON:0002066,1.49e-14,5;UBERON:0004111,1.08e-13,240;UBERON:0010523,3.11e-11,3;UBERON:0001915,3.11e-11,3;UBERON:0001982,3.11e-11,3;UBERON:0003081,5.57e-11,203;UBERON:0000025,1.89e-10,192;UBERON:0000490,1.22e-08,148;UBERON:0010260,2.66e-08,9 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29096936716765,0,0,0,0,0.306083892370903,0,0,0,0.199463657621632,0,0,0,0,0.251248665256743,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,3.7764857399674,3.4409383804245,0.347140501607594,5.08777147731609,0.419499436209906,0,1.04497483268405,1.03366703667732,1.06729878806013,0.66944122552934,3.62546385398232,0.760272105718513,4.39311703586705,4.04429388380456,0,5.00078478390847,3.81699933464489,4.0540132973996,1.53316637465883,2.84779697870439,3.11442964681692,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,1.0776853765575,1.47115712802113,0,0,0,0,0.570471821544449,0,0.23486899728753,0.161872944368132,0.280901613404497,0,0,0.206651562351531,0,0,0,0,0,0,0,0,0,0.300476117813194,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0.368199594569197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.928735856063958,0.721879481669586,0,0,0,0,0,0,0,0,0,4.42893272774789,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58803092537181,3.24089858803628,1.71228737011138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0.57191197463259,0.542621605391443,1.64648067356154,0,1.06617584622764,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315404830067869,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,1.13733384070897,1.87103075804167,0.431831832204279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15350367472613,0,0.751941714077915,0.145016693914229,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0.179872457583315,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0.573409195690071,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443565449968902,0.159296767163702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0.184105950251841,0,0,0.127894371303652,0,0.471797825567689,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0.992422356778588,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0.187967835959707,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0.23806443146374,0,0,0,0,0.404234377916439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr5:71853090..71853107,+ | |||
}} |
Revision as of 16:20, 13 September 2013
Short description: | p@chr5:71853090..71853107, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:71853090..71853107, + |
Coexpression cluster: | C381_Endothelial_Renal_Hepatic_Lymphatic_Fibroblast_squamous_esophagus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 2.53e-97 | 24 |
endothelial cell | 1.36e-87 | 36 |
meso-epithelial cell | 2.31e-69 | 45 |
blood vessel endothelial cell | 1.61e-68 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.61e-68 | 18 |
lining cell | 5.24e-53 | 58 |
barrier cell | 5.24e-53 | 58 |
vein endothelial cell | 6.39e-45 | 6 |
lymphangioblast | 3.72e-30 | 6 |
endothelial cell of lymphatic vessel | 3.72e-30 | 6 |
vascular lymphangioblast | 3.72e-30 | 6 |
endothelial cell of umbilical vein | 7.29e-24 | 3 |
mesodermal cell | 1.80e-23 | 121 |
endothelial cell of artery | 6.85e-21 | 9 |
aortic endothelial cell | 9.28e-21 | 6 |
squamous epithelial cell | 6.71e-18 | 63 |
capillary endothelial cell | 3.11e-11 | 3 |
embryonic cell | 2.96e-09 | 250 |
epithelial cell | 3.33e-09 | 253 |
glomerular endothelial cell | 8.92e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.