FFCP PHASE1:Hg19::chr4:74283279..74283295,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C703|description=CAGE_peak_at_chr4:74283279..74283295,-|id=chr4:74283279..74283295,-|ontology_enrichment_celltype=CL:0000181!1.98e-53!12;CL:0000417!1.98e-53!12;CL:0000668!1.98e-53!12;CL:0000414!1.98e-53!12;CL:0000412!1.98e-53!12;CL:0000182!1.98e-53!12;CL:0000223!1.24e-13!59|ontology_enrichment_celltype_v019=CL:0000182;1.64e-53;12|ontology_enrichment_celltype_v019_2=CL:0000182,1.64e-53,12;CL:0000223,4.70e-11,58|ontology_enrichment_development_v019=UBERON:0004161;6.40e-41;11!UBERON:0009497;1.12e-34;13!UBERON:0001041;3.79e-15;30!UBERON:0003104;1.25e-14;31!CL:0000223;2.44e-08;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002107!1.92e-55!19;UBERON:0006925!1.92e-55!19;UBERON:0008836!1.92e-55!19;UBERON:0008835!8.64e-48!22;UBERON:0003894!8.64e-48!22;UBERON:0009854!1.11e-45!23;UBERON:0007499!5.70e-42!25;UBERON:0009497!5.70e-42!25;UBERON:0000015!5.70e-42!25;UBERON:0002423!5.70e-42!25;UBERON:0006235!5.70e-42!25;UBERON:0004161!5.70e-42!25;UBERON:0005057!2.50e-40!26;UBERON:0009856!2.50e-40!26;UBERON:0002365!1.06e-33!31;UBERON:0002330!1.06e-33!31;UBERON:0002368!9.21e-30!35;UBERON:0000949!2.47e-28!45;UBERON:0003929!1.95e-23!54;UBERON:0005172!5.84e-23!55;UBERON:0005173!5.84e-23!55;UBERON:0002417!1.33e-20!61;UBERON:0000916!1.33e-20!61;UBERON:0002530!2.61e-17!59;UBERON:0005177!2.03e-16!107;UBERON:0005911!4.51e-15!82;UBERON:0001041!1.96e-12!98;UBERON:0004921!4.47e-11!129;UBERON:0004185!4.47e-11!129;UBERON:0009569!1.30e-10!113;UBERON:0000466!2.06e-09!126;UBERON:0000077!4.36e-09!130;UBERON:0001007!5.24e-09!155;UBERON:0001555!5.24e-09!155;UBERON:0007026!5.24e-09!155;UBERON:0000490!1.74e-08!138;UBERON:0002405!2.51e-08!115;UBERON:0003914!3.61e-08!118;UBERON:0004119!3.75e-08!169;UBERON:0000925!3.75e-08!169;UBERON:0006595!3.75e-08!169;UBERON:0002100!2.13e-07!216;UBERON:0001048!9.35e-07!168|ontology_enrichment_uberon_v019=UBERON:0002107;1.01e-59;19!UBERON:0006925;1.01e-59;19!UBERON:0002423;2.35e-45;25!UBERON:0002365;3.85e-35;31!UBERON:0002330;3.85e-35;31!UBERON:0002368;5.81e-31;33!UBERON:0000949;3.77e-27;43!UBERON:0005172;1.62e-13;52!UBERON:0005173;1.62e-13;52!UBERON:0002417;7.60e-12;58!UBERON:0000916;7.60e-12;58!UBERON:0002530;9.67e-12;57!UBERON:0001007;2.74e-08;81|ontology_enrichment_uberon_v019_2=UBERON:0002107,9.69e-60,19;UBERON:0006925,9.69e-60,19;UBERON:0008836,9.69e-60,19;UBERON:0008835,1.41e-51,22;UBERON:0003894,1.41e-51,22;UBERON:0009854,2.51e-49,23;UBERON:0007499,2.28e-45,25;UBERON:0009497,2.28e-45,25;UBERON:0000015,2.28e-45,25;UBERON:0002423,2.28e-45,25;UBERON:0006235,2.28e-45,25;UBERON:0004161,2.28e-45,25;UBERON:0009856,1.29e-43,26;UBERON:0002365,1.51e-36,31;UBERON:0002330,1.51e-36,31;UBERON:0002368,2.41e-32,35;UBERON:0000949,1.16e-31,45;UBERON:0003929,7.40e-21,54;UBERON:0005172,7.40e-21,54;UBERON:0005173,7.40e-21,54;UBERON:0002530,4.65e-19,59;UBERON:0002417,9.79e-19,60;UBERON:0000916,9.79e-19,60;UBERON:0005177,7.63e-14,101;UBERON:0005911,1.34e-13,82;UBERON:0001041,8.63e-13,87;UBERON:0009569,7.97e-10,112;UBERON:0003914,2.21e-09,117;UBERON:0004921,3.24e-09,118;UBERON:0005256,5.63e-09,122;UBERON:0001007,2.09e-07,145;UBERON:0001555,2.09e-07,145;UBERON:0007026,2.09e-07,145;UBERON:0000490,2.68e-07,148|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.4079531339648,4.91413608338813,4.13552934676983,0,0.614942192715568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.2636473079531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28.0548526314802,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.4477428045413,11.9502994652691,14.0199371216705,0.196854963029498,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,22.8621484537809,3.97520666736664,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C703 | |||
|description=CAGE_peak_at_chr4:74283279..74283295,- | |||
|id=chr4:74283279..74283295,- | |||
|ontology_enrichment_celltype=CL:0000181!1.98e-53!12;CL:0000417!1.98e-53!12;CL:0000668!1.98e-53!12;CL:0000414!1.98e-53!12;CL:0000412!1.98e-53!12;CL:0000182!1.98e-53!12;CL:0000223!1.24e-13!59 | |||
|ontology_enrichment_celltype_v019=CL:0000182;1.64e-53;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.64e-53,12;CL:0000223,4.70e-11,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;6.40e-41;11!UBERON:0009497;1.12e-34;13!UBERON:0001041;3.79e-15;30!UBERON:0003104;1.25e-14;31!CL:0000223;2.44e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!1.92e-55!19;UBERON:0006925!1.92e-55!19;UBERON:0008836!1.92e-55!19;UBERON:0008835!8.64e-48!22;UBERON:0003894!8.64e-48!22;UBERON:0009854!1.11e-45!23;UBERON:0007499!5.70e-42!25;UBERON:0009497!5.70e-42!25;UBERON:0000015!5.70e-42!25;UBERON:0002423!5.70e-42!25;UBERON:0006235!5.70e-42!25;UBERON:0004161!5.70e-42!25;UBERON:0005057!2.50e-40!26;UBERON:0009856!2.50e-40!26;UBERON:0002365!1.06e-33!31;UBERON:0002330!1.06e-33!31;UBERON:0002368!9.21e-30!35;UBERON:0000949!2.47e-28!45;UBERON:0003929!1.95e-23!54;UBERON:0005172!5.84e-23!55;UBERON:0005173!5.84e-23!55;UBERON:0002417!1.33e-20!61;UBERON:0000916!1.33e-20!61;UBERON:0002530!2.61e-17!59;UBERON:0005177!2.03e-16!107;UBERON:0005911!4.51e-15!82;UBERON:0001041!1.96e-12!98;UBERON:0004921!4.47e-11!129;UBERON:0004185!4.47e-11!129;UBERON:0009569!1.30e-10!113;UBERON:0000466!2.06e-09!126;UBERON:0000077!4.36e-09!130;UBERON:0001007!5.24e-09!155;UBERON:0001555!5.24e-09!155;UBERON:0007026!5.24e-09!155;UBERON:0000490!1.74e-08!138;UBERON:0002405!2.51e-08!115;UBERON:0003914!3.61e-08!118;UBERON:0004119!3.75e-08!169;UBERON:0000925!3.75e-08!169;UBERON:0006595!3.75e-08!169;UBERON:0002100!2.13e-07!216;UBERON:0001048!9.35e-07!168 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;1.01e-59;19!UBERON:0006925;1.01e-59;19!UBERON:0002423;2.35e-45;25!UBERON:0002365;3.85e-35;31!UBERON:0002330;3.85e-35;31!UBERON:0002368;5.81e-31;33!UBERON:0000949;3.77e-27;43!UBERON:0005172;1.62e-13;52!UBERON:0005173;1.62e-13;52!UBERON:0002417;7.60e-12;58!UBERON:0000916;7.60e-12;58!UBERON:0002530;9.67e-12;57!UBERON:0001007;2.74e-08;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,9.69e-60,19;UBERON:0006925,9.69e-60,19;UBERON:0008836,9.69e-60,19;UBERON:0008835,1.41e-51,22;UBERON:0003894,1.41e-51,22;UBERON:0009854,2.51e-49,23;UBERON:0007499,2.28e-45,25;UBERON:0009497,2.28e-45,25;UBERON:0000015,2.28e-45,25;UBERON:0002423,2.28e-45,25;UBERON:0006235,2.28e-45,25;UBERON:0004161,2.28e-45,25;UBERON:0009856,1.29e-43,26;UBERON:0002365,1.51e-36,31;UBERON:0002330,1.51e-36,31;UBERON:0002368,2.41e-32,35;UBERON:0000949,1.16e-31,45;UBERON:0003929,7.40e-21,54;UBERON:0005172,7.40e-21,54;UBERON:0005173,7.40e-21,54;UBERON:0002530,4.65e-19,59;UBERON:0002417,9.79e-19,60;UBERON:0000916,9.79e-19,60;UBERON:0005177,7.63e-14,101;UBERON:0005911,1.34e-13,82;UBERON:0001041,8.63e-13,87;UBERON:0009569,7.97e-10,112;UBERON:0003914,2.21e-09,117;UBERON:0004921,3.24e-09,118;UBERON:0005256,5.63e-09,122;UBERON:0001007,2.09e-07,145;UBERON:0001555,2.09e-07,145;UBERON:0007026,2.09e-07,145;UBERON:0000490,2.68e-07,148 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.4079531339648,4.91413608338813,4.13552934676983,0,0.614942192715568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.2636473079531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28.0548526314802,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.4477428045413,11.9502994652691,14.0199371216705,0.196854963029498,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,22.8621484537809,3.97520666736664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.12605604493237,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr4:74283279..74283295,- | |||
}} |
Revision as of 11:35, 13 September 2013
Short description: | p@chr4:74283279..74283295, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:74283279..74283295, - |
Coexpression cluster: | C703_liver_hepatocellular_Hepatocyte_hepatoblastoma_colon_gastrointestinal_mature |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.64e-53 | 12 |
endodermal cell | 4.70e-11 | 58 |
Ontology term | p-value | n |
---|---|---|
liver | 9.69e-60 | 19 |
digestive gland | 9.69e-60 | 19 |
liver bud | 9.69e-60 | 19 |
hepatic diverticulum | 1.41e-51 | 22 |
liver primordium | 1.41e-51 | 22 |
digestive tract diverticulum | 2.51e-49 | 23 |
epithelial sac | 2.28e-45 | 25 |
epithelium of foregut-midgut junction | 2.28e-45 | 25 |
anatomical boundary | 2.28e-45 | 25 |
hepatobiliary system | 2.28e-45 | 25 |
foregut-midgut junction | 2.28e-45 | 25 |
septum transversum | 2.28e-45 | 25 |
sac | 1.29e-43 | 26 |
exocrine gland | 1.51e-36 | 31 |
exocrine system | 1.51e-36 | 31 |
endocrine gland | 2.41e-32 | 35 |
endocrine system | 1.16e-31 | 45 |
gut epithelium | 7.40e-21 | 54 |
abdomen element | 7.40e-21 | 54 |
abdominal segment element | 7.40e-21 | 54 |
gland | 4.65e-19 | 59 |
abdominal segment of trunk | 9.79e-19 | 60 |
abdomen | 9.79e-19 | 60 |
trunk region element | 7.63e-14 | 101 |
endo-epithelium | 1.34e-13 | 82 |
foregut | 8.63e-13 | 87 |
subdivision of trunk | 7.97e-10 | 112 |
epithelial tube | 2.21e-09 | 117 |
subdivision of digestive tract | 3.24e-09 | 118 |
trunk mesenchyme | 5.63e-09 | 122 |
digestive system | 2.09e-07 | 145 |
digestive tract | 2.09e-07 | 145 |
primitive gut | 2.09e-07 | 145 |
unilaminar epithelium | 2.68e-07 | 148 |
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