FFCP PHASE1:Hg19::chr3:26664252..26664268,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=116135|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=28105|TSSclassifier=S|UniProt=Q96PB8|association_with_transcript=-28bp_to_ENST00000396641_5end|coexpression_cluster_id=C561|description=CAGE_peak_5_at_LRRC3B_5end|id=chr3:26664252..26664268,+|ontology_enrichment_celltype=CL:0000047!2.52e-19!8;CL:0000540!2.53e-14!6;CL:0000031!2.53e-14!6;CL:0000404!2.53e-14!6;CL:0002319!1.32e-10!25;CL:0002605!5.21e-08!3|ontology_enrichment_celltype_v019=CL:0000047;2.32e-13;2!CL:0000540;1.63e-09;6!CL:0000404;1.63e-09;6!CL:0002319;1.51e-07;25|ontology_enrichment_celltype_v019_2=CL:0000047,9.04e-19,8;CL:0000540,1.63e-09,6;CL:0000031,1.63e-09,6;CL:0000404,1.63e-09,6;CL:0002319,1.52e-07,25|ontology_enrichment_development_v019=CL:0000031;1.63e-09;6!UBERON:0006215;2.61e-09;3!UBERON:0006241;6.33e-09;3!UBERON:0003057;6.33e-09;3!UBERON:0006222;4.33e-07;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.58e-75!82;UBERON:0005743!1.69e-74!86;UBERON:0000073!3.51e-66!94;UBERON:0001016!3.51e-66!94;UBERON:0001049!1.32e-63!57;UBERON:0005068!1.32e-63!57;UBERON:0006241!1.32e-63!57;UBERON:0007135!1.32e-63!57;UBERON:0000955!2.31e-52!69;UBERON:0006238!2.31e-52!69;UBERON:0002616!2.00e-51!59;UBERON:0001893!2.52e-50!34;UBERON:0002020!2.79e-50!34;UBERON:0003528!2.79e-50!34;UBERON:0001869!4.74e-50!32;UBERON:0002791!2.66e-48!33;UBERON:0002780!6.24e-47!41;UBERON:0001890!6.24e-47!41;UBERON:0006240!6.24e-47!41;UBERON:0003080!1.25e-45!42;UBERON:0003075!4.92e-45!86;UBERON:0007284!4.92e-45!86;UBERON:0002346!1.69e-42!90;UBERON:0000956!6.74e-39!25;UBERON:0000203!6.74e-39!25;UBERON:0007023!5.35e-37!115;UBERON:0004121!4.53e-35!169;UBERON:0000924!6.34e-34!173;UBERON:0006601!6.34e-34!173;UBERON:0003056!2.49e-33!61;UBERON:0002619!1.13e-32!22;UBERON:0000033!3.09e-32!123;UBERON:0000153!1.01e-31!129;UBERON:0007811!1.01e-31!129;UBERON:0001950!4.04e-28!20;UBERON:0003076!2.24e-18!15;UBERON:0003057!2.24e-18!15;UBERON:0001871!1.77e-15!7;UBERON:0000349!7.67e-14!5;UBERON:0002420!1.87e-13!9;UBERON:0007245!1.87e-13!9;UBERON:0010009!1.87e-13!9;UBERON:0010011!1.87e-13!9;UBERON:0000454!1.87e-13!9;UBERON:0002308!1.21e-12!9;UBERON:0000125!1.21e-12!9;UBERON:0004733!2.68e-12!12;UBERON:0002028!2.68e-12!12;UBERON:0007277!2.68e-12!12;UBERON:0000025!1.06e-11!194;UBERON:0004732!3.10e-11!13;UBERON:0000369!9.18e-11!4;UBERON:0002435!9.18e-11!4;UBERON:0000204!9.18e-11!4;UBERON:0010082!9.18e-11!4;UBERON:0002298!1.93e-10!8;UBERON:0000200!2.87e-10!6;UBERON:0004111!7.42e-10!241;UBERON:0000064!3.77e-09!219;UBERON:0000475!5.31e-09!365;UBERON:0009663!6.29e-09!7;UBERON:0002021!1.43e-08!5;UBERON:0002240!1.66e-08!3;UBERON:0005383!1.93e-08!3;UBERON:0005382!1.93e-08!3;UBERON:0002771!2.31e-08!3;UBERON:0001896!3.52e-08!3;UBERON:0005290!3.52e-08!3;UBERON:0010096!3.52e-08!3;UBERON:0000988!1.15e-07!3;UBERON:0000922!1.17e-07!612;UBERON:0000477!3.52e-07!286;UBERON:0000483!5.71e-07!309;UBERON:0002680!7.01e-07!9;UBERON:0001895!7.01e-07!9;UBERON:0010092!7.01e-07!9;UBERON:0000119!8.48e-07!312;UBERON:0000481!8.64e-07!347|ontology_enrichment_uberon_v019=UBERON:0002791;5.63e-35;32!UBERON:0001869;8.11e-34;32!UBERON:0000956;1.06e-30;25!UBERON:0000203;1.06e-30;25!UBERON:0000349;8.40e-30;5!UBERON:0002619;3.05e-29;22!UBERON:0001893;4.64e-29;34!UBERON:0003528;1.22e-28;34!UBERON:0002020;1.22e-28;34!UBERON:0000073;2.94e-27;53!UBERON:0002616;2.94e-27;53!UBERON:0002780;5.45e-25;41!UBERON:0001890;5.45e-25;41!UBERON:0001950;1.66e-21;20!UBERON:0000955;5.97e-21;68!UBERON:0001017;2.21e-20;75!UBERON:0002420;2.94e-16;9!UBERON:0007245;2.94e-16;9!UBERON:0010009;2.94e-16;9!UBERON:0010011;2.94e-16;9!UBERON:0000454;2.94e-16;9!UBERON:0001016;1.13e-15;83!UBERON:0001871;8.39e-14;6!UBERON:0000369;1.46e-13;4!UBERON:0002435;1.46e-13;4!UBERON:0000204;1.46e-13;4!UBERON:0001876;2.87e-13;2!UBERON:0001954;5.94e-13;2!UBERON:0003022;5.94e-13;2!UBERON:0002421;5.94e-13;2!UBERON:0002600;5.94e-13;2!UBERON:0002240;6.33e-09;3!UBERON:0005174;6.33e-09;3!UBERON:0001137;6.33e-09;3!UBERON:0001896;1.23e-08;3!UBERON:0005383;1.23e-08;3!UBERON:0005290;1.23e-08;3!UBERON:0005382;1.23e-08;3!UBERON:0004733;3.50e-08;12!UBERON:0002028;3.50e-08;12!UBERON:0009663;5.81e-08;7!UBERON:0004732;1.47e-07;13!UBERON:0001882;4.33e-07;1!UBERON:0002022;4.33e-07;1!UBERON:0001874;4.33e-07;1!UBERON:0005403;4.33e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.49e-55,81;UBERON:0001016,7.28e-49,89;UBERON:0001049,1.32e-45,56;UBERON:0005068,1.32e-45,56;UBERON:0006241,1.32e-45,56;UBERON:0007135,1.32e-45,56;UBERON:0000073,1.52e-39,53;UBERON:0002616,1.52e-39,53;UBERON:0002791,2.69e-37,32;UBERON:0001869,2.69e-37,32;UBERON:0000955,2.40e-36,68;UBERON:0006238,2.40e-36,68;UBERON:0003528,5.47e-35,34;UBERON:0002020,5.47e-35,34;UBERON:0001893,5.47e-35,34;UBERON:0003075,7.66e-33,82;UBERON:0007284,7.66e-33,82;UBERON:0002780,1.15e-32,41;UBERON:0001890,1.15e-32,41;UBERON:0003080,1.15e-32,41;UBERON:0006240,1.15e-32,41;UBERON:0002346,4.09e-31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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=116135 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28105 | |||
|TSSclassifier=S | |||
|UniProt=Q96PB8 | |||
|association_with_transcript=-28bp_to_ENST00000396641_5end | |||
|coexpression_cluster_id=C561 | |||
|description=CAGE_peak_5_at_LRRC3B_5end | |||
|id=chr3:26664252..26664268,+ | |||
|ontology_enrichment_celltype=CL:0000047!2.52e-19!8;CL:0000540!2.53e-14!6;CL:0000031!2.53e-14!6;CL:0000404!2.53e-14!6;CL:0002319!1.32e-10!25;CL:0002605!5.21e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0000047;2.32e-13;2!CL:0000540;1.63e-09;6!CL:0000404;1.63e-09;6!CL:0002319;1.51e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,9.04e-19,8;CL:0000540,1.63e-09,6;CL:0000031,1.63e-09,6;CL:0000404,1.63e-09,6;CL:0002319,1.52e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000031;1.63e-09;6!UBERON:0006215;2.61e-09;3!UBERON:0006241;6.33e-09;3!UBERON:0003057;6.33e-09;3!UBERON:0006222;4.33e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.58e-75!82;UBERON:0005743!1.69e-74!86;UBERON:0000073!3.51e-66!94;UBERON:0001016!3.51e-66!94;UBERON:0001049!1.32e-63!57;UBERON:0005068!1.32e-63!57;UBERON:0006241!1.32e-63!57;UBERON:0007135!1.32e-63!57;UBERON:0000955!2.31e-52!69;UBERON:0006238!2.31e-52!69;UBERON:0002616!2.00e-51!59;UBERON:0001893!2.52e-50!34;UBERON:0002020!2.79e-50!34;UBERON:0003528!2.79e-50!34;UBERON:0001869!4.74e-50!32;UBERON:0002791!2.66e-48!33;UBERON:0002780!6.24e-47!41;UBERON:0001890!6.24e-47!41;UBERON:0006240!6.24e-47!41;UBERON:0003080!1.25e-45!42;UBERON:0003075!4.92e-45!86;UBERON:0007284!4.92e-45!86;UBERON:0002346!1.69e-42!90;UBERON:0000956!6.74e-39!25;UBERON:0000203!6.74e-39!25;UBERON:0007023!5.35e-37!115;UBERON:0004121!4.53e-35!169;UBERON:0000924!6.34e-34!173;UBERON:0006601!6.34e-34!173;UBERON:0003056!2.49e-33!61;UBERON:0002619!1.13e-32!22;UBERON:0000033!3.09e-32!123;UBERON:0000153!1.01e-31!129;UBERON:0007811!1.01e-31!129;UBERON:0001950!4.04e-28!20;UBERON:0003076!2.24e-18!15;UBERON:0003057!2.24e-18!15;UBERON:0001871!1.77e-15!7;UBERON:0000349!7.67e-14!5;UBERON:0002420!1.87e-13!9;UBERON:0007245!1.87e-13!9;UBERON:0010009!1.87e-13!9;UBERON:0010011!1.87e-13!9;UBERON:0000454!1.87e-13!9;UBERON:0002308!1.21e-12!9;UBERON:0000125!1.21e-12!9;UBERON:0004733!2.68e-12!12;UBERON:0002028!2.68e-12!12;UBERON:0007277!2.68e-12!12;UBERON:0000025!1.06e-11!194;UBERON:0004732!3.10e-11!13;UBERON:0000369!9.18e-11!4;UBERON:0002435!9.18e-11!4;UBERON:0000204!9.18e-11!4;UBERON:0010082!9.18e-11!4;UBERON:0002298!1.93e-10!8;UBERON:0000200!2.87e-10!6;UBERON:0004111!7.42e-10!241;UBERON:0000064!3.77e-09!219;UBERON:0000475!5.31e-09!365;UBERON:0009663!6.29e-09!7;UBERON:0002021!1.43e-08!5;UBERON:0002240!1.66e-08!3;UBERON:0005383!1.93e-08!3;UBERON:0005382!1.93e-08!3;UBERON:0002771!2.31e-08!3;UBERON:0001896!3.52e-08!3;UBERON:0005290!3.52e-08!3;UBERON:0010096!3.52e-08!3;UBERON:0000988!1.15e-07!3;UBERON:0000922!1.17e-07!612;UBERON:0000477!3.52e-07!286;UBERON:0000483!5.71e-07!309;UBERON:0002680!7.01e-07!9;UBERON:0001895!7.01e-07!9;UBERON:0010092!7.01e-07!9;UBERON:0000119!8.48e-07!312;UBERON:0000481!8.64e-07!347 | |||
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|short_description=p5@LRRC3B | |||
}} |
Revision as of 23:45, 12 September 2013
Short description: | p5@LRRC3B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_LRRC3B_5end |
Coexpression cluster: | C561_brain_Neural_spinal_Neurons_parietal_temporal_occipital |
Association with transcript: | -28bp_to_ENST00000396641_5end |
EntrezGene: | LRRC3B |
HGNC: | 28105 |
UniProt: | Q96PB8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 9.04e-19 | 8 |
neuron | 1.63e-09 | 6 |
neuroblast | 1.63e-09 | 6 |
electrically signaling cell | 1.63e-09 | 6 |
neural cell | 1.52e-07 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.