FFCP PHASE1:Hg19::chr22:39353724..39353729,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=200315|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17343|TSSclassifier=S|UniProt=|association_with_transcript=197bp_to_ENST00000488758_5end|coexpression_cluster_id=C107|description=CAGE_peak_3_at_APOBEC3A_5end|id=chr22:39353724..39353729,+|ontology_enrichment_celltype=CL:0002057!5.77e-84!42;CL:0000860!1.37e-77!45;CL:0000766!5.15e-57!76;CL:0002009!6.44e-52!65;CL:0002194!4.09e-51!63;CL:0000576!4.09e-51!63;CL:0000040!4.09e-51!63;CL:0000559!4.09e-51!63;CL:0000839!2.22e-50!70;CL:0000557!1.29e-46!71;CL:0000763!2.33e-44!112;CL:0000049!2.33e-44!112;CL:0000738!3.97e-39!140;CL:0000037!1.29e-33!172;CL:0000566!1.29e-33!172;CL:0002087!1.38e-32!119;CL:0002032!3.45e-31!165;CL:0000837!3.45e-31!165;CL:0000988!5.86e-31!182;CL:0002031!6.58e-31!124;CL:0002393!2.19e-16!9;CL:0002397!2.19e-16!9;CL:0000094!5.33e-12!8;CL:0000775!1.95e-09!3;CL:0000134!8.88e-09!358;CL:0000081!1.74e-08!11;CL:0002320!2.34e-08!365;CL:0000842!1.07e-07!3;CL:0000219!6.84e-07!390|ontology_enrichment_celltype_v019=CL:0000860;1.09e-66;33!CL:0002057;1.09e-66;33!CL:0000473;4.74e-46;39!CL:0000234;4.74e-46;39!CL:0000576;2.14e-37;48!CL:0000766;6.15e-24;69!CL:0000775;2.63e-15;3!CL:0000094;7.67e-15;8!CL:0000763;1.19e-14;100!CL:0002087;2.55e-11;104!CL:0000081;1.04e-10;11!CL:0000771;2.32e-10;2!CL:0000764;1.22e-09;2!CL:0000558;1.22e-09;2!CL:0000738;6.68e-09;136|ontology_enrichment_celltype_v019_2=CL:0000860,3.34e-71,42;CL:0002057,3.34e-71,42;CL:0000473,1.63e-61,48;CL:0000234,1.63e-61,48;CL:0000766,3.08e-56,72;CL:0000839,3.11e-49,66;CL:0002194,5.97e-48,59;CL:0000576,5.97e-48,59;CL:0000040,5.97e-48,59;CL:0000559,5.97e-48,59;CL:0002009,3.36e-46,61;CL:0000557,1.45e-41,67;CL:0000763,2.35e-40,108;CL:0000049,2.35e-40,108;CL:0000738,1.61e-28,136;CL:0000037,5.18e-25,168;CL:0002032,1.07e-24,161;CL:0000837,1.07e-24,161;CL:0002031,2.76e-24,120;CL:0002087,1.28e-23,115;CL:0000988,2.32e-23,177;CL:0000775,2.57e-15,3;CL:0000094,7.15e-15,8;CL:0000081,9.93e-11,11;CL:0000771,2.12e-10,2;CL:0000764,1.36e-09,2;CL:0000765,1.36e-09,2;CL:0000050,1.36e-09,2;CL:0000038,1.36e-09,2;CL:0000558,1.36e-09,2;CL:0000547,1.36e-09,2;CL:0000549,1.36e-09,2;CL:0000550,1.36e-09,2;CL:0000552,1.36e-09,2;CL:0000134,6.32e-08,354;CL:0002320,1.25e-07,361|ontology_enrichment_development_v019=CL:0002057;1.04e-51;42!CL:0000049;7.01e-12;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!1.45e-57!102;UBERON:0003061!1.45e-57!102;UBERON:0002193!2.93e-53!112;UBERON:0002371!3.83e-40!80;UBERON:0001474!1.41e-36!86;UBERON:0004765!1.62e-29!101;UBERON:0001434!1.62e-29!101;UBERON:0002405!1.43e-27!115;UBERON:0000178!4.47e-23!15;UBERON:0000179!4.47e-23!15;UBERON:0000463!4.47e-23!15;UBERON:0003081!8.42e-21!216;UBERON:0002204!1.21e-13!167;UBERON:0002384!8.73e-08!375|ontology_enrichment_uberon_v019=UBERON:0000178;9.44e-29;15!UBERON:0000179;9.44e-29;15!UBERON:0000463;9.44e-29;15!UBERON:0002390;1.27e-11;32|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.71e-54,98;UBERON:0003061,1.71e-54,98;UBERON:0002193,8.88e-49,108;UBERON:0002371,5.71e-36,76;UBERON:0001474,6.49e-33,82;UBERON:0004765,1.82e-29,90;UBERON:0000178,1.03e-28,15;UBERON:0000179,1.03e-28,15;UBERON:0000463,1.03e-28,15;UBERON:0002405,2.52e-28,93;UBERON:0001434,6.31e-26,100;UBERON:0003081,2.13e-22,203;UBERON:0002204,4.09e-13,167;UBERON:0000926,1.19e-11,315;UBERON:0004120,1.19e-11,315;UBERON:0006603,1.19e-11,315;UBERON:0002384,3.19e-07,371|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,0,0,0,0,0,0,0,2.21598163412751,0.401088894940283,0.868043482863407,0,0,0,1.45398238779565,0,1.4555043671269,1.85943229524548,0.822335776043652,1.23882548358041,7.76769459269806,3.33008918487831,2.12834006899727,6.20542225325913,1.93645405075148,0,2.25890807451126,0.545812300115692,0.449446968890169,26.6292986362685,5.77672248736969,13.4260796417799,1.64925650093358,3.39088217956774,2.98357325372886,17.1223450790865,1.13477044938228,6.22822248995575,4.77372463987812,0.521482918420201,2.38907729175628,22.3997815974346,1.84138817993782,3.79754864929061,0.422510572623884,1.06302149982522,0.838634582033504,0.44931452458598,0.600707571366025,0.16072558669708,0,0.79566670879636,1.64397738388171,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301150238155546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,23.2668158488995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,16.478154526838,23.932916736322,15.3333739971333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,1.2942852049117,0.1067275578034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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=200315 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17343 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=197bp_to_ENST00000488758_5end | |||
|coexpression_cluster_id=C107 | |||
|description=CAGE_peak_3_at_APOBEC3A_5end | |||
|id=chr22:39353724..39353729,+ | |||
|ontology_enrichment_celltype=CL:0002057!5.77e-84!42;CL:0000860!1.37e-77!45;CL:0000766!5.15e-57!76;CL:0002009!6.44e-52!65;CL:0002194!4.09e-51!63;CL:0000576!4.09e-51!63;CL:0000040!4.09e-51!63;CL:0000559!4.09e-51!63;CL:0000839!2.22e-50!70;CL:0000557!1.29e-46!71;CL:0000763!2.33e-44!112;CL:0000049!2.33e-44!112;CL:0000738!3.97e-39!140;CL:0000037!1.29e-33!172;CL:0000566!1.29e-33!172;CL:0002087!1.38e-32!119;CL:0002032!3.45e-31!165;CL:0000837!3.45e-31!165;CL:0000988!5.86e-31!182;CL:0002031!6.58e-31!124;CL:0002393!2.19e-16!9;CL:0002397!2.19e-16!9;CL:0000094!5.33e-12!8;CL:0000775!1.95e-09!3;CL:0000134!8.88e-09!358;CL:0000081!1.74e-08!11;CL:0002320!2.34e-08!365;CL:0000842!1.07e-07!3;CL:0000219!6.84e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.09e-66;33!CL:0002057;1.09e-66;33!CL:0000473;4.74e-46;39!CL:0000234;4.74e-46;39!CL:0000576;2.14e-37;48!CL:0000766;6.15e-24;69!CL:0000775;2.63e-15;3!CL:0000094;7.67e-15;8!CL:0000763;1.19e-14;100!CL:0002087;2.55e-11;104!CL:0000081;1.04e-10;11!CL:0000771;2.32e-10;2!CL:0000764;1.22e-09;2!CL:0000558;1.22e-09;2!CL:0000738;6.68e-09;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.34e-71,42;CL:0002057,3.34e-71,42;CL:0000473,1.63e-61,48;CL:0000234,1.63e-61,48;CL:0000766,3.08e-56,72;CL:0000839,3.11e-49,66;CL:0002194,5.97e-48,59;CL:0000576,5.97e-48,59;CL:0000040,5.97e-48,59;CL:0000559,5.97e-48,59;CL:0002009,3.36e-46,61;CL:0000557,1.45e-41,67;CL:0000763,2.35e-40,108;CL:0000049,2.35e-40,108;CL:0000738,1.61e-28,136;CL:0000037,5.18e-25,168;CL:0002032,1.07e-24,161;CL:0000837,1.07e-24,161;CL:0002031,2.76e-24,120;CL:0002087,1.28e-23,115;CL:0000988,2.32e-23,177;CL:0000775,2.57e-15,3;CL:0000094,7.15e-15,8;CL:0000081,9.93e-11,11;CL:0000771,2.12e-10,2;CL:0000764,1.36e-09,2;CL:0000765,1.36e-09,2;CL:0000050,1.36e-09,2;CL:0000038,1.36e-09,2;CL:0000558,1.36e-09,2;CL:0000547,1.36e-09,2;CL:0000549,1.36e-09,2;CL:0000550,1.36e-09,2;CL:0000552,1.36e-09,2;CL:0000134,6.32e-08,354;CL:0002320,1.25e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;1.04e-51;42!CL:0000049;7.01e-12;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.45e-57!102;UBERON:0003061!1.45e-57!102;UBERON:0002193!2.93e-53!112;UBERON:0002371!3.83e-40!80;UBERON:0001474!1.41e-36!86;UBERON:0004765!1.62e-29!101;UBERON:0001434!1.62e-29!101;UBERON:0002405!1.43e-27!115;UBERON:0000178!4.47e-23!15;UBERON:0000179!4.47e-23!15;UBERON:0000463!4.47e-23!15;UBERON:0003081!8.42e-21!216;UBERON:0002204!1.21e-13!167;UBERON:0002384!8.73e-08!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;9.44e-29;15!UBERON:0000179;9.44e-29;15!UBERON:0000463;9.44e-29;15!UBERON:0002390;1.27e-11;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.71e-54,98;UBERON:0003061,1.71e-54,98;UBERON:0002193,8.88e-49,108;UBERON:0002371,5.71e-36,76;UBERON:0001474,6.49e-33,82;UBERON:0004765,1.82e-29,90;UBERON:0000178,1.03e-28,15;UBERON:0000179,1.03e-28,15;UBERON:0000463,1.03e-28,15;UBERON:0002405,2.52e-28,93;UBERON:0001434,6.31e-26,100;UBERON:0003081,2.13e-22,203;UBERON:0002204,4.09e-13,167;UBERON:0000926,1.19e-11,315;UBERON:0004120,1.19e-11,315;UBERON:0006603,1.19e-11,315;UBERON:0002384,3.19e-07,371 | |||
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|short_description=p3@APOBEC3A | |||
}} |
Revision as of 12:02, 12 September 2013
Short description: | p3@APOBEC3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_APOBEC3A_5end |
Coexpression cluster: | C107_Neutrophils_CD14_Eosinophils_Monocytederived_Whole_Peripheral_blood |
Association with transcript: | 197bp_to_ENST00000488758_5end |
EntrezGene: | APOBEC3A |
HGNC: | 17343 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.71e-54 | 98 |
blood island | 1.71e-54 | 98 |
hemolymphoid system | 8.88e-49 | 108 |
bone marrow | 5.71e-36 | 76 |
bone element | 6.49e-33 | 82 |
skeletal element | 1.82e-29 | 90 |
blood | 1.03e-28 | 15 |
haemolymphatic fluid | 1.03e-28 | 15 |
organism substance | 1.03e-28 | 15 |
immune system | 2.52e-28 | 93 |
skeletal system | 6.31e-26 | 100 |
lateral plate mesoderm | 2.13e-22 | 203 |
musculoskeletal system | 4.09e-13 | 167 |
mesoderm | 1.19e-11 | 315 |
mesoderm-derived structure | 1.19e-11 | 315 |
presumptive mesoderm | 1.19e-11 | 315 |
connective tissue | 3.19e-07 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.