FFCP PHASE1:Hg19::chr2:173686542..173686585,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=11069|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16626|TSSclassifier=N|UniProt=Q8WZA2|association_with_transcript=227bp_to_NM_001100397,uc002uhw.3_5end|coexpression_cluster_id=C2670|description=CAGE_peak_5_at_RAPGEF4_5end|id=chr2:173686542..173686585,+|ontology_enrichment_celltype=CL:0002139!1.36e-17!24;CL:0000115!2.27e-12!35;CL:0000071!9.72e-12!18;CL:0002546!9.72e-12!18;CL:0002078!2.65e-09!44;CL:0005020!1.00e-07!6;CL:0002138!1.00e-07!6;CL:0005022!1.00e-07!6;CL:0002543!1.08e-07!6;CL:1000413!3.58e-07!9|ontology_enrichment_celltype_v019=CL:0002139;2.17e-14;24!CL:0000115;1.24e-10;36!CL:0002543;7.19e-10;6!CL:0000071;7.74e-09;18!CL:0002138;9.22e-08;6|ontology_enrichment_celltype_v019_2=CL:0002139,1.62e-14,24;CL:0000115,7.49e-12,36;CL:0002543,5.54e-10,6;CL:0000071,4.97e-09,18;CL:0002546,4.97e-09,18;CL:0002078,1.66e-08,45;CL:0005020,1.23e-07,6;CL:0002138,1.23e-07,6;CL:0005022,1.23e-07,6|ontology_enrichment_development_v019=CL:0002546;7.74e-09;18!UBERON:0006601;5.78e-08;82!CL:0005022;9.22e-08;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.99e-76!115;UBERON:0001049!6.60e-34!57;UBERON:0005068!6.60e-34!57;UBERON:0006241!6.60e-34!57;UBERON:0007135!6.60e-34!57;UBERON:0004111!4.68e-28!241;UBERON:0002616!1.56e-27!59;UBERON:0003080!9.32e-27!42;UBERON:0002780!4.67e-26!41;UBERON:0001890!4.67e-26!41;UBERON:0006240!4.67e-26!41;UBERON:0003075!4.08e-25!86;UBERON:0007284!4.08e-25!86;UBERON:0002020!2.54e-24!34;UBERON:0003528!2.54e-24!34;UBERON:0000477!3.31e-24!286;UBERON:0001893!1.28e-23!34;UBERON:0000025!1.37e-23!194;UBERON:0002346!3.03e-23!90;UBERON:0001017!4.44e-23!82;UBERON:0002791!9.04e-23!33;UBERON:0005743!1.16e-22!86;UBERON:0000955!3.09e-22!69;UBERON:0006238!3.09e-22!69;UBERON:0001869!5.70e-22!32;UBERON:0000073!3.95e-21!94;UBERON:0001016!3.95e-21!94;UBERON:0002619!2.36e-17!22;UBERON:0003056!2.64e-16!61;UBERON:0000956!5.53e-16!25;UBERON:0000203!5.53e-16!25;UBERON:0001950!2.83e-15!20;UBERON:0000153!2.10e-13!129;UBERON:0007811!2.10e-13!129;UBERON:0000483!1.13e-12!309;UBERON:0000119!2.65e-12!312;UBERON:0000033!8.52e-12!123;UBERON:0001986!9.72e-12!18;UBERON:0004638!9.72e-12!18;UBERON:0004852!9.72e-12!18;UBERON:0004121!4.52e-11!169;UBERON:0000924!1.94e-10!173;UBERON:0006601!1.94e-10!173;UBERON:0002308!3.96e-10!9;UBERON:0000125!3.96e-10!9;UBERON:0002298!5.97e-10!8;UBERON:0000487!7.85e-09!22;UBERON:0003076!2.75e-08!15;UBERON:0003057!2.75e-08!15;UBERON:0000480!3.49e-08!626;UBERON:0000467!8.29e-08!625;UBERON:0009663!1.02e-07!7;UBERON:0002420!2.10e-07!9;UBERON:0007245!2.10e-07!9;UBERON:0010009!2.10e-07!9;UBERON:0010011!2.10e-07!9;UBERON:0000454!2.10e-07!9;UBERON:0000468!2.48e-07!659;UBERON:0006914!2.72e-07!25;UBERON:0000200!2.93e-07!6;UBERON:0002465!3.51e-07!10;UBERON:0003915!3.58e-07!9;UBERON:0004700!3.58e-07!9;UBERON:0001917!3.58e-07!9;UBERON:0000055!5.09e-07!69;UBERON:0004732!5.17e-07!13;UBERON:0003103!5.38e-07!69;UBERON:0001871!9.17e-07!7|ontology_enrichment_uberon_v019=UBERON:0007023;2.69e-17;114!UBERON:0003528;1.93e-13;34!UBERON:0002020;1.93e-13;34!UBERON:0000073;1.22e-12;53!UBERON:0002616;1.22e-12;53!UBERON:0001893;1.58e-12;34!UBERON:0002791;2.65e-12;32!UBERON:0002780;6.31e-12;41!UBERON:0001890;6.31e-12;41!UBERON:0001869;1.05e-11;32!UBERON:0002619;4.06e-11;22!UBERON:0002298;6.00e-11;6!UBERON:0004732;1.35e-09;13!UBERON:0000956;1.97e-09;25!UBERON:0000203;1.97e-09;25!UBERON:0001950;6.26e-09;20!UBERON:0004638;7.74e-09;18!UBERON:0001986;7.74e-09;18!UBERON:0004852;7.74e-09;18!UBERON:0000125;1.07e-08;9!UBERON:0002308;1.07e-08;9!UBERON:0001638;2.46e-08;9!UBERON:0003920;2.46e-08;9!UBERON:0004582;2.46e-08;9!UBERON:0004733;2.60e-08;12!UBERON:0002028;2.60e-08;12!UBERON:0001017;2.93e-07;75!UBERON:0000955;3.47e-07;68!UBERON:0000200;5.84e-07;6!UBERON:0000487;8.48e-07;22|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.56e-66,114;UBERON:0001049,2.50e-24,56;UBERON:0005068,2.50e-24,56;UBERON:0006241,2.50e-24,56;UBERON:0007135,2.50e-24,56;UBERON:0000073,8.27e-23,53;UBERON:0002616,8.27e-23,53;UBERON:0003075,3.31e-20,82;UBERON:0007284,3.31e-20,82;UBERON:0004111,4.50e-19,240;UBERON:0002346,9.34e-19,86;UBERON:0000955,1.19e-16,68;UBERON:0006238,1.19e-16,68;UBERON:0002780,4.63e-16,41;UBERON:0001890,4.63e-16,41;UBERON:0003080,4.63e-16,41;UBERON:0006240,4.63e-16,41;UBERON:0001017,5.83e-16,81;UBERON:0003528,8.12e-16,34;UBERON:0002020,8.12e-16,34;UBERON:0000025,1.21e-15,192;UBERON:0001893,3.66e-15,34;UBERON:0001016,1.60e-14,89;UBERON:0010371,1.15e-13,104;UBERON:0002791,2.50e-13,32;UBERON:0010314,2.59e-13,132;UBERON:0001869,2.70e-13,32;UBERON:0002619,4.20e-11,22;UBERON:0003056,4.65e-11,61;UBERON:0002298,4.89e-11,6;UBERON:0003076,1.06e-09,15;UBERON:0003057,1.06e-09,15;UBERON:0004732,1.32e-09,13;UBERON:0000956,2.03e-09,25;UBERON:0000203,2.03e-09,25;UBERON:0004638,4.97e-09,18;UBERON:0001986,4.97e-09,18;UBERON:0004852,4.97e-09,18;UBERON:0001950,7.73e-09,20;UBERON:0000125,1.23e-08,9;UBERON:000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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=11069 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16626 | |||
|TSSclassifier=N | |||
|UniProt=Q8WZA2 | |||
|association_with_transcript=227bp_to_NM_001100397,uc002uhw.3_5end | |||
|coexpression_cluster_id=C2670 | |||
|description=CAGE_peak_5_at_RAPGEF4_5end | |||
|id=chr2:173686542..173686585,+ | |||
|ontology_enrichment_celltype=CL:0002139!1.36e-17!24;CL:0000115!2.27e-12!35;CL:0000071!9.72e-12!18;CL:0002546!9.72e-12!18;CL:0002078!2.65e-09!44;CL:0005020!1.00e-07!6;CL:0002138!1.00e-07!6;CL:0005022!1.00e-07!6;CL:0002543!1.08e-07!6;CL:1000413!3.58e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.17e-14;24!CL:0000115;1.24e-10;36!CL:0002543;7.19e-10;6!CL:0000071;7.74e-09;18!CL:0002138;9.22e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.62e-14,24;CL:0000115,7.49e-12,36;CL:0002543,5.54e-10,6;CL:0000071,4.97e-09,18;CL:0002546,4.97e-09,18;CL:0002078,1.66e-08,45;CL:0005020,1.23e-07,6;CL:0002138,1.23e-07,6;CL:0005022,1.23e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002546;7.74e-09;18!UBERON:0006601;5.78e-08;82!CL:0005022;9.22e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.99e-76!115;UBERON:0001049!6.60e-34!57;UBERON:0005068!6.60e-34!57;UBERON:0006241!6.60e-34!57;UBERON:0007135!6.60e-34!57;UBERON:0004111!4.68e-28!241;UBERON:0002616!1.56e-27!59;UBERON:0003080!9.32e-27!42;UBERON:0002780!4.67e-26!41;UBERON:0001890!4.67e-26!41;UBERON:0006240!4.67e-26!41;UBERON:0003075!4.08e-25!86;UBERON:0007284!4.08e-25!86;UBERON:0002020!2.54e-24!34;UBERON:0003528!2.54e-24!34;UBERON:0000477!3.31e-24!286;UBERON:0001893!1.28e-23!34;UBERON:0000025!1.37e-23!194;UBERON:0002346!3.03e-23!90;UBERON:0001017!4.44e-23!82;UBERON:0002791!9.04e-23!33;UBERON:0005743!1.16e-22!86;UBERON:0000955!3.09e-22!69;UBERON:0006238!3.09e-22!69;UBERON:0001869!5.70e-22!32;UBERON:0000073!3.95e-21!94;UBERON:0001016!3.95e-21!94;UBERON:0002619!2.36e-17!22;UBERON:0003056!2.64e-16!61;UBERON:0000956!5.53e-16!25;UBERON:0000203!5.53e-16!25;UBERON:0001950!2.83e-15!20;UBERON:0000153!2.10e-13!129;UBERON:0007811!2.10e-13!129;UBERON:0000483!1.13e-12!309;UBERON:0000119!2.65e-12!312;UBERON:0000033!8.52e-12!123;UBERON:0001986!9.72e-12!18;UBERON:0004638!9.72e-12!18;UBERON:0004852!9.72e-12!18;UBERON:0004121!4.52e-11!169;UBERON:0000924!1.94e-10!173;UBERON:0006601!1.94e-10!173;UBERON:0002308!3.96e-10!9;UBERON:0000125!3.96e-10!9;UBERON:0002298!5.97e-10!8;UBERON:0000487!7.85e-09!22;UBERON:0003076!2.75e-08!15;UBERON:0003057!2.75e-08!15;UBERON:0000480!3.49e-08!626;UBERON:0000467!8.29e-08!625;UBERON:0009663!1.02e-07!7;UBERON:0002420!2.10e-07!9;UBERON:0007245!2.10e-07!9;UBERON:0010009!2.10e-07!9;UBERON:0010011!2.10e-07!9;UBERON:0000454!2.10e-07!9;UBERON:0000468!2.48e-07!659;UBERON:0006914!2.72e-07!25;UBERON:0000200!2.93e-07!6;UBERON:0002465!3.51e-07!10;UBERON:0003915!3.58e-07!9;UBERON:0004700!3.58e-07!9;UBERON:0001917!3.58e-07!9;UBERON:0000055!5.09e-07!69;UBERON:0004732!5.17e-07!13;UBERON:0003103!5.38e-07!69;UBERON:0001871!9.17e-07!7 | |||
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|short_description=p5@RAPGEF4 | |||
}} |
Revision as of 14:42, 12 September 2013
Short description: | p5@RAPGEF4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_RAPGEF4_5end |
Coexpression cluster: | C2670_uterus_lung_cervix_adipose_penis_ductus_seminal |
Association with transcript: | 227bp_to_NM_001100397, uc002uhw.3_5end |
EntrezGene: | RAPGEF4 |
HGNC: | 16626 |
UniProt: | Q8WZA2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.62e-14 | 24 |
endothelial cell | 7.49e-12 | 36 |
vein endothelial cell | 5.54e-10 | 6 |
blood vessel endothelial cell | 4.97e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.97e-09 | 18 |
meso-epithelial cell | 1.66e-08 | 45 |
lymphangioblast | 1.23e-07 | 6 |
endothelial cell of lymphatic vessel | 1.23e-07 | 6 |
vascular lymphangioblast | 1.23e-07 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.