FFCP PHASE1:Hg19::chr19:1584972..1584977,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=-48bp_to_M77818_5end|description=CAGE_peak_5_at_M77818_5end|id=chr19:1584972..1584977,-|ontology_enrichment_celltype=CL:0000349!1.95e-32!3;CL:0002577!1.95e-32!3;CL:0000039!1.35e-24!7;CL:0000586!1.35e-24!7;CL:0002536!2.06e-22!2;CL:0002541!4.94e-15!3;CL:0002537!3.17e-09!5|ontology_enrichment_celltype_v019=CL:0002536;3.96e-66;2!CL:0000039;6.48e-20;7!CL:0000586;6.48e-20;7!CL:0000349;2.39e-16;19!CL:0002577;2.59e-12;3|ontology_enrichment_celltype_v019_2=CL:0002536,1.08e-65,2;CL:0000039,5.89e-20,7;CL:0000586,5.89e-20,7;CL:0000349,2.52e-16,19;CL:0002577,2.07e-12,3|ontology_enrichment_development_v019=UBERON:0003124;5.05e-34;1!UBERON:0009117;2.84e-14;10!UBERON:0005564;2.84e-14;10|ontology_enrichment_disease=DOID:3095!5.55e-08!22;DOID:2994!5.55e-08!22|ontology_enrichment_disease_v019=DOID:3095;5.09e-07;22!DOID:2994;5.09e-07;22|ontology_enrichment_disease_v019_2=DOID:3095,4.94e-07,22;DOID:2994,4.94e-07,22|ontology_enrichment_uberon=UBERON:0005631!1.04e-73!14;UBERON:0000158!1.04e-73!14;UBERON:0003124!5.47e-54!7;UBERON:0001987!8.72e-43!4;UBERON:0004340!8.72e-43!4;UBERON:0000478!1.61e-42!24;UBERON:0000305!2.78e-24!7;UBERON:0000473!1.45e-21!8;UBERON:0004871!2.73e-21!8;UBERON:0004923!9.08e-21!57;UBERON:0003135!9.17e-16!11;UBERON:0000476!4.94e-15!3;UBERON:0000920!4.94e-15!3;UBERON:0003133!2.74e-13!48;UBERON:0002146!1.47e-11!1;UBERON:0005623!1.47e-11!1;UBERON:0005156!1.23e-10!59;UBERON:0000990!1.23e-10!59;UBERON:0000995!2.31e-08!21;UBERON:0000991!2.35e-08!21;UBERON:0009196!2.35e-08!21;UBERON:0009117!2.35e-08!21;UBERON:0005564!2.35e-08!21;UBERON:0005795!5.45e-08!22;UBERON:0003975!5.45e-08!22;UBERON:0004176!5.55e-08!22;UBERON:0003101!5.55e-08!22;UBERON:0000079!5.55e-08!22;UBERON:0004175!4.77e-07!25|ontology_enrichment_uberon_v019=UBERON:0001987;9.87e-34;4!UBERON:0000478;1.82e-22;24!UBERON:0000305;8.62e-20;7!UBERON:0000473;1.44e-17;8!UBERON:0005631;3.47e-14;10!UBERON:0000158;3.47e-14;10!UBERON:0003135;4.52e-13;11!UBERON:0000991;2.60e-07;21!UBERON:0003101;5.09e-07;22!UBERON:0000079;5.09e-07;22|ontology_enrichment_uberon_v019_2=UBERON:0005631,6.59e-38,14;UBERON:0000158,6.59e-38,14;UBERON:0001987,7.07e-34,4;UBERON:0004340,7.07e-34,4;UBERON:0000478,1.93e-22,24;UBERON:0003124,7.13e-20,7;UBERON:0000305,1.15e-19,7;UBERON:0000473,1.33e-17,8;UBERON:0004871,2.38e-17,8;UBERON:0003135,4.25e-13,11;UBERON:0003133,1.25e-11,48;UBERON:0005156,1.45e-09,59;UBERON:0000990,1.45e-09,59;UBERON:0004923,1.52e-08,66;UBERON:0000991,2.52e-07,21;UBERON:0009196,2.52e-07,21;UBERON:0009117,2.52e-07,21;UBERON:0005564,2.52e-07,21;UBERON:0000995,2.69e-07,21;UBERON:0004176,4.94e-07,22;UBERON:0003101,4.94e-07,22;UBERON:0000079,4.94e-07,22;UBERON:0005795,5.24e-07,22;UBERON:0003975,5.24e-07,22|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,1.09220686065086,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.909382714338778,1.66435439510497,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0.366390373607449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1531308121143,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61193297845189,1.3360870263278,2.02168778976659,0.250707539292375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p5@M77818}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-48bp_to_M77818_5end | |||
|description=CAGE_peak_5_at_M77818_5end | |||
|id=chr19:1584972..1584977,- | |||
|ontology_enrichment_celltype=CL:0000349!1.95e-32!3;CL:0002577!1.95e-32!3;CL:0000039!1.35e-24!7;CL:0000586!1.35e-24!7;CL:0002536!2.06e-22!2;CL:0002541!4.94e-15!3;CL:0002537!3.17e-09!5 | |||
|ontology_enrichment_celltype_v019=CL:0002536;3.96e-66;2!CL:0000039;6.48e-20;7!CL:0000586;6.48e-20;7!CL:0000349;2.39e-16;19!CL:0002577;2.59e-12;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002536,1.08e-65,2;CL:0000039,5.89e-20,7;CL:0000586,5.89e-20,7;CL:0000349,2.52e-16,19;CL:0002577,2.07e-12,3 | |||
|ontology_enrichment_development_v019=UBERON:0003124;5.05e-34;1!UBERON:0009117;2.84e-14;10!UBERON:0005564;2.84e-14;10 | |||
|ontology_enrichment_disease=DOID:3095!5.55e-08!22;DOID:2994!5.55e-08!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;5.09e-07;22!DOID:2994;5.09e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,4.94e-07,22;DOID:2994,4.94e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0005631!1.04e-73!14;UBERON:0000158!1.04e-73!14;UBERON:0003124!5.47e-54!7;UBERON:0001987!8.72e-43!4;UBERON:0004340!8.72e-43!4;UBERON:0000478!1.61e-42!24;UBERON:0000305!2.78e-24!7;UBERON:0000473!1.45e-21!8;UBERON:0004871!2.73e-21!8;UBERON:0004923!9.08e-21!57;UBERON:0003135!9.17e-16!11;UBERON:0000476!4.94e-15!3;UBERON:0000920!4.94e-15!3;UBERON:0003133!2.74e-13!48;UBERON:0002146!1.47e-11!1;UBERON:0005623!1.47e-11!1;UBERON:0005156!1.23e-10!59;UBERON:0000990!1.23e-10!59;UBERON:0000995!2.31e-08!21;UBERON:0000991!2.35e-08!21;UBERON:0009196!2.35e-08!21;UBERON:0009117!2.35e-08!21;UBERON:0005564!2.35e-08!21;UBERON:0005795!5.45e-08!22;UBERON:0003975!5.45e-08!22;UBERON:0004176!5.55e-08!22;UBERON:0003101!5.55e-08!22;UBERON:0000079!5.55e-08!22;UBERON:0004175!4.77e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0001987;9.87e-34;4!UBERON:0000478;1.82e-22;24!UBERON:0000305;8.62e-20;7!UBERON:0000473;1.44e-17;8!UBERON:0005631;3.47e-14;10!UBERON:0000158;3.47e-14;10!UBERON:0003135;4.52e-13;11!UBERON:0000991;2.60e-07;21!UBERON:0003101;5.09e-07;22!UBERON:0000079;5.09e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,6.59e-38,14;UBERON:0000158,6.59e-38,14;UBERON:0001987,7.07e-34,4;UBERON:0004340,7.07e-34,4;UBERON:0000478,1.93e-22,24;UBERON:0003124,7.13e-20,7;UBERON:0000305,1.15e-19,7;UBERON:0000473,1.33e-17,8;UBERON:0004871,2.38e-17,8;UBERON:0003135,4.25e-13,11;UBERON:0003133,1.25e-11,48;UBERON:0005156,1.45e-09,59;UBERON:0000990,1.45e-09,59;UBERON:0004923,1.52e-08,66;UBERON:0000991,2.52e-07,21;UBERON:0009196,2.52e-07,21;UBERON:0009117,2.52e-07,21;UBERON:0005564,2.52e-07,21;UBERON:0000995,2.69e-07,21;UBERON:0004176,4.94e-07,22;UBERON:0003101,4.94e-07,22;UBERON:0000079,4.94e-07,22;UBERON:0005795,5.24e-07,22;UBERON:0003975,5.24e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,1.09220686065086,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.909382714338778,1.66435439510497,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0.366390373607449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1531308121143,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61193297845189,1.3360870263278,2.02168778976659,0.250707539292375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p5@M77818 | |||
}} |
Revision as of 19:11, 11 September 2013
Short description: | p5@M77818 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_M77818_5end |
Coexpression cluster: | NA |
Association with transcript: | -48bp_to_M77818_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
amniotic epithelial cell | 1.08e-65 | 2 |
germ line cell | 5.89e-20 | 7 |
germ cell | 5.89e-20 | 7 |
extraembryonic cell | 2.52e-16 | 19 |
placental epithelial cell | 2.07e-12 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 6.59e-38 | 14 |
membranous layer | 6.59e-38 | 14 |
placenta | 7.07e-34 | 4 |
allantois | 7.07e-34 | 4 |
extraembryonic structure | 1.93e-22 | 24 |
chorion | 7.13e-20 | 7 |
amnion | 1.15e-19 | 7 |
testis | 1.33e-17 | 8 |
somatic layer of lateral plate mesoderm | 2.38e-17 | 8 |
male reproductive organ | 4.25e-13 | 11 |
reproductive organ | 1.25e-11 | 48 |
reproductive structure | 1.45e-09 | 59 |
reproductive system | 1.45e-09 | 59 |
organ component layer | 1.52e-08 | 66 |
gonad | 2.52e-07 | 21 |
indifferent external genitalia | 2.52e-07 | 21 |
indifferent gonad | 2.52e-07 | 21 |
gonad primordium | 2.52e-07 | 21 |
uterus | 2.69e-07 | 21 |
external genitalia | 4.94e-07 | 22 |
male organism | 4.94e-07 | 22 |
male reproductive system | 4.94e-07 | 22 |
embryonic uterus | 5.24e-07 | 22 |
internal female genitalia | 5.24e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 4.94e-07 | 22 |
germ cell cancer | 4.94e-07 | 22 |
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