FFCP PHASE1:Hg19::chr18:57364869..57364912,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=147372|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=29426|TSSclassifier=W|UniProt=Q6UXH8|association_with_transcript=-225bp_to_NM_133459,uc002lib.2_5end|coexpression_cluster_id=C3733|description=CAGE_peak_2_at_CCBE1_5end|id=chr18:57364869..57364912,-|ontology_enrichment_celltype=CL:0000055!1.03e-34!180;CL:0000057!3.22e-24!75;CL:0000680!8.10e-14!57;CL:0000056!8.10e-14!57;CL:0000355!8.10e-14!57;CL:0002620!1.28e-13!23;CL:0000187!4.62e-12!54;CL:0000183!5.04e-12!59;CL:0000393!2.33e-11!60;CL:0000211!2.33e-11!60;CL:0000222!7.40e-10!119;CL:0000192!2.24e-09!42;CL:0000514!2.24e-09!42;CL:0000220!3.42e-07!246;CL:0000499!4.26e-07!27;CL:0002321!4.66e-07!248|ontology_enrichment_celltype_v019=CL:0002620;4.35e-17;23!CL:0000057;5.11e-11;73!CL:0000499;1.22e-07;28!CL:0002556;1.44e-07;6!CL:0000680;4.57e-07;7!CL:0002320;5.22e-07;188!CL:0000187;5.52e-07;55!CL:0002540;9.00e-07;6|ontology_enrichment_celltype_v019_2=CL:0000057,6.79e-26,76;CL:0002620,3.49e-17,23;CL:0000680,4.31e-12,58;CL:0000056,4.31e-12,58;CL:0000355,4.31e-12,58;CL:0000187,3.80e-10,55;CL:0000393,3.02e-09,61;CL:0000211,3.02e-09,61;CL:0000192,6.07e-08,43;CL:0000514,6.07e-08,43;CL:0000048,6.31e-08,427;CL:0000222,7.69e-08,121;CL:0000499,8.48e-08,28;CL:0000723,1.41e-07,433;CL:0002556,1.42e-07,6;CL:0000034,8.06e-07,441;CL:0002540,9.51e-07,6|ontology_enrichment_development_v019=CL:0000355;2.53e-07;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!2.82e-21!83;UBERON:0002329!2.82e-21!83;UBERON:0003077!2.82e-21!83;UBERON:0003059!2.82e-21!83;UBERON:0007282!2.82e-21!83;UBERON:0009618!2.82e-21!83;UBERON:0007285!2.82e-21!83;UBERON:0004290!6.41e-18!70;UBERON:0000486!1.80e-17!82;UBERON:0000475!2.31e-16!365;UBERON:0003102!9.55e-16!95;UBERON:0005256!2.24e-15!143;UBERON:0002100!1.90e-14!216;UBERON:0001134!6.08e-13!61;UBERON:0002036!6.08e-13!61;UBERON:0003082!6.08e-13!61;UBERON:0002199!1.66e-12!45;UBERON:0002416!1.66e-12!45;UBERON:0002385!1.71e-12!63;UBERON:0001015!1.71e-12!63;UBERON:0000383!1.71e-12!63;UBERON:0002097!2.24e-11!40;UBERON:0000481!4.19e-10!347;UBERON:0000490!1.31e-09!138;UBERON:0003104!1.56e-09!238;UBERON:0009142!1.56e-09!238;UBERON:0000119!1.04e-07!312;UBERON:0000468!1.49e-07!659;UBERON:0002067!2.19e-07!9;UBERON:0004016!2.19e-07!9;UBERON:0010083!2.19e-07!9;UBERON:0000483!2.65e-07!309|ontology_enrichment_uberon_v019=UBERON:0002097;5.00e-11;41!UBERON:0002199;1.42e-10;46!UBERON:0002416;1.42e-10;46!UBERON:0003102;1.29e-09;50!UBERON:0002067;4.10e-09;9!UBERON:0002204;6.94e-08;70!UBERON:0002384;9.51e-08;198!UBERON:0001758;1.44e-07;6!UBERON:0003672;1.44e-07;6!UBERON:0001434;1.59e-07;36!UBERON:0000075;5.70e-07;16|ontology_enrichment_uberon_v019_2=UBERON:0007524,5.98e-17,73;UBERON:0002329,7.68e-17,71;UBERON:0003059,7.68e-17,71;UBERON:0007282,7.68e-17,71;UBERON:0004290,7.68e-17,71;UBERON:0009618,7.68e-17,71;UBERON:0003077,2.26e-16,72;UBERON:0007285,2.26e-16,72;UBERON:0002199,1.93e-15,46;UBERON:0002416,1.93e-15,46;UBERON:0007503,2.75e-15,78;UBERON:0000486,3.44e-15,83;UBERON:0003102,5.48e-15,99;UBERON:0002097,1.43e-14,41;UBERON:0000490,1.43e-11,148;UBERON:0005256,2.36e-11,122;UBERON:0001134,3.55e-11,62;UBERON:0002036,3.55e-11,62;UBERON:0003082,3.55e-11,62;UBERON:0002385,1.92e-10,64;UBERON:0001015,1.92e-10,64;UBERON:0000383,1.92e-10,64;UBERON:0003104,9.43e-10,160;UBERON:0009142,9.43e-10,160;UBERON:0002100,3.13e-09,199;UBERON:0002067,4.11e-09,9;UBERON:0004016,4.11e-09,9;UBERON:0010083,4.11e-09,9;UBERON:0001758,1.42e-07,6;UBERON:0003672,1.42e-07,6;UBERON:0000075,5.85e-07,16|phase1_expression=1.2717486548939,4.71021152560163,1.69145284915165,7.00513088471913,0.893922188854576,0,2.53299878168311,1.89515962028049,2.87304191019822,2.21160542851358,1.39560233594486,0,0,3.58922423584135,4.30816588446291,1.34465029290355,0.602694528023977,0.730310090387373,0,0.123121058076788,1.83600622119828,0,0.286235987131057,0.136874425072884,0.502170558379211,0,0,0,0,0,0,3.67768489791571,8.433765725791,2.21852406100073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.383587685530591,21.686349143074,16.0428131403485,9.55987025141436,0.795285947051099,3.40644409211845,0,0,0.087834785693126,1.0478326039817,0,0,0,0,0,0,0,0,0.198762407366705,0.860234595106124,0.347140501607594,0.56530794192401,10.9069853414576,0.275118041940067,0.208994966536811,0,1.06729878806013,0,0,0,0,1.83831540172934,1.62028389576352,0,0,0,0,0,0,0,0,1.3082821564276,0.496971951695318,2.02608818663328,5.82600395578163,6.3104056564739,2.12801029319014,0.560677600142307,0,0.49333509683432,0.622422070799533,1.48181739276657,0.163461903113459,0,0,11.481750159856,21.2268852244618,8.55707732316674,8.21967743034906,11.0388428725139,11.4929790501373,10.9551629227754,28.1732756331753,25.426703683536,11.2625101481584,24.94806000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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=147372 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29426 | |||
|TSSclassifier=W | |||
|UniProt=Q6UXH8 | |||
|association_with_transcript=-225bp_to_NM_133459,uc002lib.2_5end | |||
|coexpression_cluster_id=C3733 | |||
|description=CAGE_peak_2_at_CCBE1_5end | |||
|id=chr18:57364869..57364912,- | |||
|ontology_enrichment_celltype=CL:0000055!1.03e-34!180;CL:0000057!3.22e-24!75;CL:0000680!8.10e-14!57;CL:0000056!8.10e-14!57;CL:0000355!8.10e-14!57;CL:0002620!1.28e-13!23;CL:0000187!4.62e-12!54;CL:0000183!5.04e-12!59;CL:0000393!2.33e-11!60;CL:0000211!2.33e-11!60;CL:0000222!7.40e-10!119;CL:0000192!2.24e-09!42;CL:0000514!2.24e-09!42;CL:0000220!3.42e-07!246;CL:0000499!4.26e-07!27;CL:0002321!4.66e-07!248 | |||
|ontology_enrichment_celltype_v019=CL:0002620;4.35e-17;23!CL:0000057;5.11e-11;73!CL:0000499;1.22e-07;28!CL:0002556;1.44e-07;6!CL:0000680;4.57e-07;7!CL:0002320;5.22e-07;188!CL:0000187;5.52e-07;55!CL:0002540;9.00e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.79e-26,76;CL:0002620,3.49e-17,23;CL:0000680,4.31e-12,58;CL:0000056,4.31e-12,58;CL:0000355,4.31e-12,58;CL:0000187,3.80e-10,55;CL:0000393,3.02e-09,61;CL:0000211,3.02e-09,61;CL:0000192,6.07e-08,43;CL:0000514,6.07e-08,43;CL:0000048,6.31e-08,427;CL:0000222,7.69e-08,121;CL:0000499,8.48e-08,28;CL:0000723,1.41e-07,433;CL:0002556,1.42e-07,6;CL:0000034,8.06e-07,441;CL:0002540,9.51e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000355;2.53e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.82e-21!83;UBERON:0002329!2.82e-21!83;UBERON:0003077!2.82e-21!83;UBERON:0003059!2.82e-21!83;UBERON:0007282!2.82e-21!83;UBERON:0009618!2.82e-21!83;UBERON:0007285!2.82e-21!83;UBERON:0004290!6.41e-18!70;UBERON:0000486!1.80e-17!82;UBERON:0000475!2.31e-16!365;UBERON:0003102!9.55e-16!95;UBERON:0005256!2.24e-15!143;UBERON:0002100!1.90e-14!216;UBERON:0001134!6.08e-13!61;UBERON:0002036!6.08e-13!61;UBERON:0003082!6.08e-13!61;UBERON:0002199!1.66e-12!45;UBERON:0002416!1.66e-12!45;UBERON:0002385!1.71e-12!63;UBERON:0001015!1.71e-12!63;UBERON:0000383!1.71e-12!63;UBERON:0002097!2.24e-11!40;UBERON:0000481!4.19e-10!347;UBERON:0000490!1.31e-09!138;UBERON:0003104!1.56e-09!238;UBERON:0009142!1.56e-09!238;UBERON:0000119!1.04e-07!312;UBERON:0000468!1.49e-07!659;UBERON:0002067!2.19e-07!9;UBERON:0004016!2.19e-07!9;UBERON:0010083!2.19e-07!9;UBERON:0000483!2.65e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;5.00e-11;41!UBERON:0002199;1.42e-10;46!UBERON:0002416;1.42e-10;46!UBERON:0003102;1.29e-09;50!UBERON:0002067;4.10e-09;9!UBERON:0002204;6.94e-08;70!UBERON:0002384;9.51e-08;198!UBERON:0001758;1.44e-07;6!UBERON:0003672;1.44e-07;6!UBERON:0001434;1.59e-07;36!UBERON:0000075;5.70e-07;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,5.98e-17,73;UBERON:0002329,7.68e-17,71;UBERON:0003059,7.68e-17,71;UBERON:0007282,7.68e-17,71;UBERON:0004290,7.68e-17,71;UBERON:0009618,7.68e-17,71;UBERON:0003077,2.26e-16,72;UBERON:0007285,2.26e-16,72;UBERON:0002199,1.93e-15,46;UBERON:0002416,1.93e-15,46;UBERON:0007503,2.75e-15,78;UBERON:0000486,3.44e-15,83;UBERON:0003102,5.48e-15,99;UBERON:0002097,1.43e-14,41;UBERON:0000490,1.43e-11,148;UBERON:0005256,2.36e-11,122;UBERON:0001134,3.55e-11,62;UBERON:0002036,3.55e-11,62;UBERON:0003082,3.55e-11,62;UBERON:0002385,1.92e-10,64;UBERON:0001015,1.92e-10,64;UBERON:0000383,1.92e-10,64;UBERON:0003104,9.43e-10,160;UBERON:0009142,9.43e-10,160;UBERON:0002100,3.13e-09,199;UBERON:0002067,4.11e-09,9;UBERON:0004016,4.11e-09,9;UBERON:0010083,4.11e-09,9;UBERON:0001758,1.42e-07,6;UBERON:0003672,1.42e-07,6;UBERON:0000075,5.85e-07,16 | |||
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| |||
|short_description=p2@CCBE1 | |||
}} |
Revision as of 17:55, 11 September 2013
Short description: | p2@CCBE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_CCBE1_5end |
Coexpression cluster: | C3733_Fibroblast_mesenchymal_bone_tridermal_myxofibrosarcoma_Hair_Myoblast |
Association with transcript: | -225bp_to_NM_133459, uc002lib.2_5end |
EntrezGene: | CCBE1 |
HGNC: | 29426 |
UniProt: | Q6UXH8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.79e-26 | 76 |
skin fibroblast | 3.49e-17 | 23 |
muscle precursor cell | 4.31e-12 | 58 |
myoblast | 4.31e-12 | 58 |
multi-potent skeletal muscle stem cell | 4.31e-12 | 58 |
muscle cell | 3.80e-10 | 55 |
electrically responsive cell | 3.02e-09 | 61 |
electrically active cell | 3.02e-09 | 61 |
smooth muscle cell | 6.07e-08 | 43 |
smooth muscle myoblast | 6.07e-08 | 43 |
multi fate stem cell | 6.31e-08 | 427 |
mesodermal cell | 7.69e-08 | 121 |
stromal cell | 8.48e-08 | 28 |
somatic stem cell | 1.41e-07 | 433 |
fibroblast of periodontium | 1.42e-07 | 6 |
stem cell | 8.06e-07 | 441 |
mesenchymal stem cell of the bone marrow | 9.51e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 5.98e-17 | 73 |
somite | 7.68e-17 | 71 |
presomitic mesoderm | 7.68e-17 | 71 |
presumptive segmental plate | 7.68e-17 | 71 |
dermomyotome | 7.68e-17 | 71 |
trunk paraxial mesoderm | 7.68e-17 | 71 |
paraxial mesoderm | 2.26e-16 | 72 |
presumptive paraxial mesoderm | 2.26e-16 | 72 |
integument | 1.93e-15 | 46 |
integumental system | 1.93e-15 | 46 |
epithelial vesicle | 2.75e-15 | 78 |
multilaminar epithelium | 3.44e-15 | 83 |
surface structure | 5.48e-15 | 99 |
skin of body | 1.43e-14 | 41 |
unilaminar epithelium | 1.43e-11 | 148 |
trunk mesenchyme | 2.36e-11 | 122 |
skeletal muscle tissue | 3.55e-11 | 62 |
striated muscle tissue | 3.55e-11 | 62 |
myotome | 3.55e-11 | 62 |
muscle tissue | 1.92e-10 | 64 |
musculature | 1.92e-10 | 64 |
musculature of body | 1.92e-10 | 64 |
mesenchyme | 9.43e-10 | 160 |
entire embryonic mesenchyme | 9.43e-10 | 160 |
trunk | 3.13e-09 | 199 |
dermis | 4.11e-09 | 9 |
dermatome | 4.11e-09 | 9 |
future dermis | 4.11e-09 | 9 |
periodontium | 1.42e-07 | 6 |
dentition | 1.42e-07 | 6 |
subdivision of skeletal system | 5.85e-07 | 16 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.