FFCP PHASE1:Hg19::chr17:48272163..48272166,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1277|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2197|TSSclassifier=N|UniProt=|association_with_transcript=-450bp_to_ENST00000463440_5end|coexpression_cluster_id=C59|description=CAGE_peak_58_at_COL1A1_5end|id=chr17:48272163..48272166,-|ontology_enrichment_celltype=CL:0000055!1.87e-23!180;CL:0000057!5.69e-22!75;CL:0000048!1.03e-12!430;CL:0000723!4.03e-12!436;CL:0002620!4.85e-12!23;CL:0000034!2.32e-11!444;CL:0002320!9.19e-10!365;CL:0002334!1.66e-08!12;CL:0000134!2.35e-08!358;CL:0002569!3.79e-08!6;CL:0002371!1.27e-07!591;CL:0000219!3.60e-07!390|ontology_enrichment_celltype_v019=CL:0002334;3.88e-11;12!CL:0000135;2.45e-08;3!CL:0002579;2.45e-08;3!CL:0000388;2.45e-08;3!CL:0000632;4.38e-08;3|ontology_enrichment_celltype_v019_2=CL:0000057,4.73e-11,76;CL:0002334,5.11e-11,12;CL:0000062,2.38e-08,11;CL:0000375,2.38e-08,11;CL:0000335,2.38e-08,11;CL:0000135,2.64e-08,3;CL:0000388,2.64e-08,3;CL:0002579,3.94e-08,3;CL:0000632,4.23e-08,3;CL:0002581,7.39e-07,1|ontology_enrichment_development_v019=CL:0000335;2.74e-08;11!UBERON:0000358;3.31e-07;1!UBERON:0003099;4.55e-07;1!UBERON:0003852;4.55e-07;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3369;3.61e-07;1|ontology_enrichment_disease_v019_2=DOID:3369,3.73e-07,1|ontology_enrichment_uberon=UBERON:0002384!3.31e-10!375;UBERON:0002199!1.96e-08!45;UBERON:0002416!1.96e-08!45;UBERON:0003422!3.79e-08!6;UBERON:0002097!7.78e-08!40;UBERON:0000914!9.71e-08!83;UBERON:0002329!9.71e-08!83;UBERON:0003077!9.71e-08!83;UBERON:0003059!9.71e-08!83;UBERON:0007282!9.71e-08!83;UBERON:0009618!9.71e-08!83;UBERON:0007285!9.71e-08!83;UBERON:0004290!6.92e-07!70|ontology_enrichment_uberon_v019=UBERON:0007846;2.45e-08;3!UBERON:0000043;2.45e-08;3!UBERON:0007845;2.45e-08;3!UBERON:0005705;4.55e-07;1!UBERON:0008193;4.55e-07;1!UBERON:0010912;4.55e-07;1!UBERON:0002514;4.55e-07;1!UBERON:0003457;4.55e-07;1!UBERON:0008907;4.55e-07;1!UBERON:0008001;4.55e-07;1!UBERON:0007213;4.55e-07;1!UBERON:0009891;4.55e-07;1!UBERON:0007914;4.55e-07;1!UBERON:0007375;4.55e-07;1!UBERON:0003323;4.55e-07;1!UBERON:0010258;4.55e-07;1!UBERON:0005253;4.55e-07;1!UBERON:0007842;4.55e-07;1!UBERON:0002397;4.55e-07;1!UBERON:0003113;4.55e-07;1!UBERON:0003277;4.55e-07;1!UBERON:0001709;4.55e-07;1!UBERON:0002244;4.55e-07;1!UBERON:0005620;4.55e-07;1!UBERON:0010364;4.55e-07;1!UBERON:0004288;4.55e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0007846,2.64e-08,3;UBERON:0000043,2.64e-08,3;UBERON:0007845,2.64e-08,3;UBERON:0005705,4.69e-07,1;UBERON:0008193,4.69e-07,1;UBERON:0010912,4.69e-07,1;UBERON:0002514,4.69e-07,1;UBERON:0003457,4.69e-07,1;UBERON:0008907,4.69e-07,1;UBERON:0008001,4.69e-07,1;UBERON:0007213,4.69e-07,1;UBERON:0009891,4.69e-07,1;UBERON:0007914,4.69e-07,1;UBERON:0009292,4.69e-07,1;UBERON:0003099,4.69e-07,1;UBERON:0007375,4.69e-07,1;UBERON:0003323,4.69e-07,1;UBERON:0010258,4.69e-07,1;UBERON:0007842,4.69e-07,1;UBERON:0009494,4.69e-07,1;UBERON:0010042,4.69e-07,1;UBERON:0010045,4.69e-07,1;UBERON:0010259,4.69e-07,1;UBERON:0010359,4.69e-07,1;UBERON:0009526,4.69e-07,1;UBERON:0002397,4.69e-07,1;UBERON:0003113,4.69e-07,1;UBERON:0003277,4.69e-07,1;UBERON:0001709,4.69e-07,1;UBERON:0004066,4.69e-07,1;UBERON:0002244,4.69e-07,1;UBERON:0005620,4.69e-07,1;UBERON:0004362,4.69e-07,1;UBERON:0010364,4.69e-07,1;UBERON:0010046,4.69e-07,1;UBERON:0005868,4.69e-07,1;UBERON:0007238,4.69e-07,1;UBERON:0004288,4.69e-07,1;UBERON:0004068,4.69e-07,1;UBERON:0010334,4.69e-07,1;UBERON:0003852,4.69e-07,1;UBERON:0010253,4.69e-07,1;UBERON:0007029,8.27e-07,1|phase1_expression=0.726713517082227,0.856402095563933,0.986680828671798,0,0.446961094427288,0.872338524100369,5.06599756336621,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0.246242116153576,0.204000691244253,0.626909442956176,0,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00267582127178,0.434539556882471,0.795285947051099,0,0,0.665188192387692,0.351339142772504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.47880366186723,0.12663051166458,0.132409180813219,1.43418310374407,0,0,0,0,0.933633106199299,0.269421344139376,0.163461903113459,0.454072282934794,0,0,0.312160076830321,0,0,0.117434498643765,0,0,0,0.122834317311768,0,3.56400857184616,1.7308685049499,0,0.718618141816238,0.168336113954066,0,0,0,0.30648779579902,0.901428353439581,0,0.179389635688862,1.06778694409284,0.635795703478686,0.300091096084402,0.309157587715317,0.772921620136887,0.558350568994769,1.5189869901714,0.487185025805993,0.504867548488229,0.276149695926898,0.484938170456436,0.710019185033229,0.503760491138201,0.339121184620975,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0,0.775630294546667,0,0,0.531876233169741,1.040074369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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1277 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-450bp_to_ENST00000463440_5end | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_58_at_COL1A1_5end | |||
|id=chr17:48272163..48272166,- | |||
|ontology_enrichment_celltype=CL:0000055!1.87e-23!180;CL:0000057!5.69e-22!75;CL:0000048!1.03e-12!430;CL:0000723!4.03e-12!436;CL:0002620!4.85e-12!23;CL:0000034!2.32e-11!444;CL:0002320!9.19e-10!365;CL:0002334!1.66e-08!12;CL:0000134!2.35e-08!358;CL:0002569!3.79e-08!6;CL:0002371!1.27e-07!591;CL:0000219!3.60e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0002334;3.88e-11;12!CL:0000135;2.45e-08;3!CL:0002579;2.45e-08;3!CL:0000388;2.45e-08;3!CL:0000632;4.38e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.73e-11,76;CL:0002334,5.11e-11,12;CL:0000062,2.38e-08,11;CL:0000375,2.38e-08,11;CL:0000335,2.38e-08,11;CL:0000135,2.64e-08,3;CL:0000388,2.64e-08,3;CL:0002579,3.94e-08,3;CL:0000632,4.23e-08,3;CL:0002581,7.39e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000335;2.74e-08;11!UBERON:0000358;3.31e-07;1!UBERON:0003099;4.55e-07;1!UBERON:0003852;4.55e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3369;3.61e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3369,3.73e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002384!3.31e-10!375;UBERON:0002199!1.96e-08!45;UBERON:0002416!1.96e-08!45;UBERON:0003422!3.79e-08!6;UBERON:0002097!7.78e-08!40;UBERON:0000914!9.71e-08!83;UBERON:0002329!9.71e-08!83;UBERON:0003077!9.71e-08!83;UBERON:0003059!9.71e-08!83;UBERON:0007282!9.71e-08!83;UBERON:0009618!9.71e-08!83;UBERON:0007285!9.71e-08!83;UBERON:0004290!6.92e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0007846;2.45e-08;3!UBERON:0000043;2.45e-08;3!UBERON:0007845;2.45e-08;3!UBERON:0005705;4.55e-07;1!UBERON:0008193;4.55e-07;1!UBERON:0010912;4.55e-07;1!UBERON:0002514;4.55e-07;1!UBERON:0003457;4.55e-07;1!UBERON:0008907;4.55e-07;1!UBERON:0008001;4.55e-07;1!UBERON:0007213;4.55e-07;1!UBERON:0009891;4.55e-07;1!UBERON:0007914;4.55e-07;1!UBERON:0007375;4.55e-07;1!UBERON:0003323;4.55e-07;1!UBERON:0010258;4.55e-07;1!UBERON:0005253;4.55e-07;1!UBERON:0007842;4.55e-07;1!UBERON:0002397;4.55e-07;1!UBERON:0003113;4.55e-07;1!UBERON:0003277;4.55e-07;1!UBERON:0001709;4.55e-07;1!UBERON:0002244;4.55e-07;1!UBERON:0005620;4.55e-07;1!UBERON:0010364;4.55e-07;1!UBERON:0004288;4.55e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,2.64e-08,3;UBERON:0000043,2.64e-08,3;UBERON:0007845,2.64e-08,3;UBERON:0005705,4.69e-07,1;UBERON:0008193,4.69e-07,1;UBERON:0010912,4.69e-07,1;UBERON:0002514,4.69e-07,1;UBERON:0003457,4.69e-07,1;UBERON:0008907,4.69e-07,1;UBERON:0008001,4.69e-07,1;UBERON:0007213,4.69e-07,1;UBERON:0009891,4.69e-07,1;UBERON:0007914,4.69e-07,1;UBERON:0009292,4.69e-07,1;UBERON:0003099,4.69e-07,1;UBERON:0007375,4.69e-07,1;UBERON:0003323,4.69e-07,1;UBERON:0010258,4.69e-07,1;UBERON:0007842,4.69e-07,1;UBERON:0009494,4.69e-07,1;UBERON:0010042,4.69e-07,1;UBERON:0010045,4.69e-07,1;UBERON:0010259,4.69e-07,1;UBERON:0010359,4.69e-07,1;UBERON:0009526,4.69e-07,1;UBERON:0002397,4.69e-07,1;UBERON:0003113,4.69e-07,1;UBERON:0003277,4.69e-07,1;UBERON:0001709,4.69e-07,1;UBERON:0004066,4.69e-07,1;UBERON:0002244,4.69e-07,1;UBERON:0005620,4.69e-07,1;UBERON:0004362,4.69e-07,1;UBERON:0010364,4.69e-07,1;UBERON:0010046,4.69e-07,1;UBERON:0005868,4.69e-07,1;UBERON:0007238,4.69e-07,1;UBERON:0004288,4.69e-07,1;UBERON:0004068,4.69e-07,1;UBERON:0010334,4.69e-07,1;UBERON:0003852,4.69e-07,1;UBERON:0010253,4.69e-07,1;UBERON:0007029,8.27e-07,1 | |||
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|short_description=p58@COL1A1 | |||
}} |
Revision as of 14:28, 11 September 2013
Short description: | p58@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_58_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -450bp_to_ENST00000463440_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.73e-11 | 76 |
preadipocyte | 5.11e-11 | 12 |
osteoblast | 2.38e-08 | 11 |
osteoprogenitor cell | 2.38e-08 | 11 |
mesenchyme condensation cell | 2.38e-08 | 11 |
fibrocyte | 2.64e-08 | 3 |
tendon cell | 2.64e-08 | 3 |
omentum preadipocyte | 3.94e-08 | 3 |
hepatic stellate cell | 4.23e-08 | 3 |
perirenal preadipocyte | 7.39e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
peripheral primitive neuroectodermal tumor | 3.73e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.