FFCP PHASE1:Hg19::chr16:69139617..69139628,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3038|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4820|TSSclassifier=S|UniProt=O00219|association_with_transcript=150bp_to_NM_001199280,uc010cfh.2_5end|coexpression_cluster_id=C49|description=CAGE_peak_3_at_HAS3_5end|id=chr16:69139617..69139628,+|ontology_enrichment_celltype=CL:0002322!2.34e-13!5;CL:0000066!2.57e-09!254;CL:0002251!6.78e-07!21|ontology_enrichment_celltype_v019=CL:0002322;3.63e-66;5!CL:0002321;3.55e-22;15!CL:0000540;4.86e-21;6!CL:0000404;4.86e-21;6!CL:0000148;1.55e-12;10!CL:0000147;4.07e-09;14!CL:0000650;7.52e-08;2!CL:1000500;7.52e-08;2!CL:1000618;7.52e-08;2!CL:1001318;7.52e-08;2!CL:0002173;7.52e-08;2|ontology_enrichment_celltype_v019_2=CL:0002322,3.64e-66,5;CL:0000540,4.86e-21,6;CL:0000031,4.86e-21,6;CL:0000404,4.86e-21,6;CL:0000047,6.02e-16,8;CL:0000148,1.55e-12,10;CL:0000541,1.55e-12,10;CL:0000147,4.07e-09,14;CL:0000650,9.19e-08,2;CL:1000500,9.19e-08,2;CL:1000618,9.19e-08,2;CL:1001318,9.19e-08,2;CL:0002173,9.19e-08,2;CL:0000133,1.28e-07,59|ontology_enrichment_development_v019=CL:0000031;4.86e-21;6|ontology_enrichment_disease=DOID:1749!6.17e-09!14|ontology_enrichment_disease_v019=DOID:3151;2.11e-14;1!DOID:3149;2.11e-14;1!DOID:3451;7.52e-08;2!DOID:4159;7.52e-08;2!DOID:0060122;7.52e-08;2!DOID:4468;7.52e-08;2|ontology_enrichment_disease_v019_2=DOID:3151,2.75e-14,1;DOID:3149,2.75e-14,1;DOID:4468,6.15e-08,2;DOID:3451,8.60e-08,2;DOID:4159,8.60e-08,2;DOID:0060122,8.60e-08,2|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0003567;7.52e-08;2!UBERON:0003838;7.52e-08;2!UBERON:0003586;7.52e-08;2!UBERON:0005169;7.52e-08;2!UBERON:0002321;7.52e-08;2!UBERON:0005215;7.52e-08;2!UBERON:0002303;7.52e-08;2!UBERON:0002319;7.52e-08;2|ontology_enrichment_uberon_v019_2=UBERON:0003567,9.19e-08,2;UBERON:0003838,9.19e-08,2;UBERON:0003586,9.19e-08,2;UBERON:0005169,9.19e-08,2;UBERON:0002321,9.19e-08,2;UBERON:0005215,9.19e-08,2;UBERON:0002303,9.19e-08,2;UBERON:0002319,9.19e-08,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0.12663051166458,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0.286804595389004,3.29329006549908,3.5783037446801,2.44007280025989,1.24393266018445,2.27088765788066,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0.277765335475589,0,0,0,0,0.117408694235822,0.288732895522148,0.925971025153221,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0.105551628892876,0,0,0.431831832204279,0,0,1.00337954770971,0,0,0.447749509444357,0,0,0,0,0,0,0.0915694648183434,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.677167111206413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0,0.779160935160341,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.227586896570999,0,0,0,0,0,0,0,0,0,0,0,0,1.25481369850743,0,0.341826167541004,0,0,0,0,0,0,1.02193298195737,0,0,0,0,0,0,0,1.68798451622422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.91821828489147,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0.34823682632161,0,0.171986032471617,0,0,0,0.0969890164884194,0,0,0,0.19871461170299,0,0,0,0,0.19980960958213,0.144090417154106,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.71615112632092,5.77665633708382,4.56984371832104,0.2249738915515,0,0,1.0063040627978,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.999843263696853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512483037175893,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0.159633859057151,0,0.756215088665154,0,0,0,0.490738592505128,0.235939446695481,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,2.7348740450911,0,0,0.175871244359621,0,0,0,0,0,0,0,0,0,0,0,0.556157009460346,0,0,0,0,0,0,0,0.158013611732727,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0,0.233939463462106,0,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0.240724100067505,0,0,0,0,0,0.872701380680755,0,0,0,0,0.504665699340316,0.655593431782173,0,0.305966489225945,0.801652215796681,0,0.752122617877125,0.0757786982182394,0,0,0,0,0,0,0,0.224263725161227,0,0,0,0.342233301085281,0,0.143444410785353,0,0.0814032686109745,0,0,0.269475606319761,0,0,0,0,0,0|short_description=p3@HAS3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=3038 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4820 | |||
|TSSclassifier=S | |||
|UniProt=O00219 | |||
|association_with_transcript=150bp_to_NM_001199280,uc010cfh.2_5end | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_3_at_HAS3_5end | |||
|id=chr16:69139617..69139628,+ | |||
|ontology_enrichment_celltype=CL:0002322!2.34e-13!5;CL:0000066!2.57e-09!254;CL:0002251!6.78e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0002322;3.63e-66;5!CL:0002321;3.55e-22;15!CL:0000540;4.86e-21;6!CL:0000404;4.86e-21;6!CL:0000148;1.55e-12;10!CL:0000147;4.07e-09;14!CL:0000650;7.52e-08;2!CL:1000500;7.52e-08;2!CL:1000618;7.52e-08;2!CL:1001318;7.52e-08;2!CL:0002173;7.52e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,3.64e-66,5;CL:0000540,4.86e-21,6;CL:0000031,4.86e-21,6;CL:0000404,4.86e-21,6;CL:0000047,6.02e-16,8;CL:0000148,1.55e-12,10;CL:0000541,1.55e-12,10;CL:0000147,4.07e-09,14;CL:0000650,9.19e-08,2;CL:1000500,9.19e-08,2;CL:1000618,9.19e-08,2;CL:1001318,9.19e-08,2;CL:0002173,9.19e-08,2;CL:0000133,1.28e-07,59 | |||
|ontology_enrichment_development_v019=CL:0000031;4.86e-21;6 | |||
|ontology_enrichment_disease=DOID:1749!6.17e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:3151;2.11e-14;1!DOID:3149;2.11e-14;1!DOID:3451;7.52e-08;2!DOID:4159;7.52e-08;2!DOID:0060122;7.52e-08;2!DOID:4468;7.52e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,2.75e-14,1;DOID:3149,2.75e-14,1;DOID:4468,6.15e-08,2;DOID:3451,8.60e-08,2;DOID:4159,8.60e-08,2;DOID:0060122,8.60e-08,2 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0003567;7.52e-08;2!UBERON:0003838;7.52e-08;2!UBERON:0003586;7.52e-08;2!UBERON:0005169;7.52e-08;2!UBERON:0002321;7.52e-08;2!UBERON:0005215;7.52e-08;2!UBERON:0002303;7.52e-08;2!UBERON:0002319;7.52e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003567,9.19e-08,2;UBERON:0003838,9.19e-08,2;UBERON:0003586,9.19e-08,2;UBERON:0005169,9.19e-08,2;UBERON:0002321,9.19e-08,2;UBERON:0005215,9.19e-08,2;UBERON:0002303,9.19e-08,2;UBERON:0002319,9.19e-08,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0.12663051166458,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0.286804595389004,3.29329006549908,3.5783037446801,2.44007280025989,1.24393266018445,2.27088765788066,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0.277765335475589,0,0,0,0,0.117408694235822,0.288732895522148,0.925971025153221,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0.105551628892876,0,0,0.431831832204279,0,0,1.00337954770971,0,0,0.447749509444357,0,0,0,0,0,0,0.0915694648183434,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.677167111206413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0,0.779160935160341,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.227586896570999,0,0,0,0,0,0,0,0,0,0,0,0,1.25481369850743,0,0.341826167541004,0,0,0,0,0,0,1.02193298195737,0,0,0,0,0,0,0,1.68798451622422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.91821828489147,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0.34823682632161,0,0.171986032471617,0,0,0,0.0969890164884194,0,0,0,0.19871461170299,0,0,0,0,0.19980960958213,0.144090417154106,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.71615112632092,5.77665633708382,4.56984371832104,0.2249738915515,0,0,1.0063040627978,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.999843263696853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512483037175893,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0.159633859057151,0,0.756215088665154,0,0,0,0.490738592505128,0.235939446695481,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,2.7348740450911,0,0,0.175871244359621,0,0,0,0,0,0,0,0,0,0,0,0.556157009460346,0,0,0,0,0,0,0,0.158013611732727,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0,0.233939463462106,0,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0.240724100067505,0,0,0,0,0,0.872701380680755,0,0,0,0,0.504665699340316,0.655593431782173,0,0.305966489225945,0.801652215796681,0,0.752122617877125,0.0757786982182394,0,0,0,0,0,0,0,0.224263725161227,0,0,0,0.342233301085281,0,0.143444410785353,0,0.0814032686109745,0,0,0.269475606319761,0,0,0,0,0,0 | |||
|short_description=p3@HAS3 | |||
}} |
Revision as of 11:18, 11 September 2013
Short description: | p3@HAS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_HAS3_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 150bp_to_NM_001199280, uc010cfh.2_5end |
EntrezGene: | HAS3 |
HGNC: | 4820 |
UniProt: | O00219 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 3.64e-66 | 5 |
neuron | 4.86e-21 | 6 |
neuroblast | 4.86e-21 | 6 |
electrically signaling cell | 4.86e-21 | 6 |
neuronal stem cell | 6.02e-16 | 8 |
melanocyte | 1.55e-12 | 10 |
melanoblast | 1.55e-12 | 10 |
pigment cell | 4.07e-09 | 14 |
mesangial cell | 9.19e-08 | 2 |
kidney interstitial cell | 9.19e-08 | 2 |
juxtaglomerular complex cell | 9.19e-08 | 2 |
renal interstitial pericyte | 9.19e-08 | 2 |
extraglomerular mesangial cell | 9.19e-08 | 2 |
neurectodermal cell | 1.28e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
abdomen connective tissue | 9.19e-08 | 2 |
abdominal segment connective tissue | 9.19e-08 | 2 |
trunk connective tissue | 9.19e-08 | 2 |
interstitial tissue | 9.19e-08 | 2 |
extraglomerular mesangium | 9.19e-08 | 2 |
kidney interstitium | 9.19e-08 | 2 |
juxtaglomerular apparatus | 9.19e-08 | 2 |
mesangium | 9.19e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 2.75e-14 | 1 |
keratoacanthoma | 2.75e-14 | 1 |
clear cell adenocarcinoma | 6.15e-08 | 2 |
skin carcinoma | 8.60e-08 | 2 |
skin cancer | 8.60e-08 | 2 |
integumentary system cancer | 8.60e-08 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.