FFCP PHASE1:Hg19::chr15:48413211..48413239,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=283652|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=20611|TSSclassifier=S|UniProt=A5X8Z9|association_with_transcript=0bp_to_ENST00000449382_5end|coexpression_cluster_id=C58|description=CAGE_peak_2_at_SLC24A5_5end|id=chr15:48413211..48413239,+|ontology_enrichment_celltype=CL:0000147!2.25e-46!14;CL:0000148!3.38e-37!10;CL:0000541!3.38e-37!10;CL:0000149!2.90e-19!4;CL:0000710!9.27e-18!20;CL:0002567!3.74e-15!3;CL:0000325!5.92e-15!39;CL:0002586!1.04e-14!3;CL:0000075!1.02e-12!27;CL:0002077!4.20e-10!33;CL:0000453!1.03e-08!5;CL:0002322!2.04e-08!5;CL:0000333!2.24e-07!41|ontology_enrichment_celltype_v019=CL:0000147;2.66e-70;14!CL:0000148;2.67e-49;10!CL:0000149;8.79e-40;4!CL:0002567;6.66e-31;3!CL:0002586;6.75e-30;3!CL:0000710;2.25e-24;20!CL:0000075;6.83e-18;27!CL:0002077;1.62e-12;34!CL:0002566;8.62e-12;1|ontology_enrichment_celltype_v019_2=CL:0000147,2.47e-70,14;CL:0000148,2.67e-49,10;CL:0000541,2.67e-49,10;CL:0000149,7.95e-40,4;CL:0002567,6.66e-31,3;CL:0002586,6.11e-30,3;CL:0000710,2.25e-24,20;CL:0000075,6.83e-18,27;CL:0002077,4.53e-14,34;CL:0002566,8.62e-12,1;CL:0000333,5.59e-11,41;CL:0000133,1.59e-07,59|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:1909!1.15e-10!2|ontology_enrichment_disease_v019=DOID:1909;3.65e-21;2!DOID:5409;1.24e-10;4|ontology_enrichment_disease_v019_2=DOID:1909,3.47e-21,2;DOID:5409,1.33e-10,4|ontology_enrichment_uberon=UBERON:0001894!7.12e-23!7;UBERON:0006222!7.12e-23!7;UBERON:0003296!6.95e-19!4;UBERON:0010133!6.95e-19!4;UBERON:0000966!2.44e-15!5;UBERON:0005388!2.44e-15!5;UBERON:0001802!2.44e-15!5;UBERON:0001781!1.04e-14!3;UBERON:0001782!1.04e-14!3;UBERON:0005424!1.04e-14!3;UBERON:0001905!1.39e-10!2;UBERON:0002757!1.39e-10!2;UBERON:0010134!1.39e-10!2;UBERON:0002784!1.39e-10!2;UBERON:0005408!1.39e-10!2;UBERON:0001899!1.39e-10!2;UBERON:0000007!4.84e-10!2;UBERON:0003075!1.59e-09!86;UBERON:0007284!1.59e-09!86;UBERON:0005743!2.24e-09!86;UBERON:0002346!5.91e-09!90;UBERON:0000073!3.42e-08!94;UBERON:0001016!3.42e-08!94;UBERON:0001049!4.77e-07!57;UBERON:0005068!4.77e-07!57;UBERON:0006241!4.77e-07!57;UBERON:0007135!4.77e-07!57;UBERON:0002240!9.35e-07!3|ontology_enrichment_uberon_v019=UBERON:0000966;1.05e-31;5!UBERON:0005388;1.05e-31;5!UBERON:0001802;1.05e-31;5!UBERON:0001781;6.75e-30;3!UBERON:0001782;6.75e-30;3!UBERON:0001905;4.95e-21;2!UBERON:0002757;4.95e-21;2!UBERON:0010134;4.95e-21;2!UBERON:0005408;4.95e-21;2!UBERON:0001899;4.95e-21;2!UBERON:0000970;2.99e-12;20!UBERON:0002104;1.16e-11;21!UBERON:0003296;5.31e-11;4!UBERON:0010133;5.31e-11;4!UBERON:0002784;5.31e-11;4!UBERON:0000020;1.22e-10;23!UBERON:0001032;3.42e-10;24!UBERON:0004456;3.42e-10;24!UBERON:0007625;1.36e-08;11!UBERON:0000019;1.55e-08;19!UBERON:0000047;1.55e-08;19!UBERON:0004088;1.55e-08;19!UBERON:0010230;1.55e-08;19!UBERON:0001456;9.72e-08;21!UBERON:0010371;1.25e-07;31|ontology_enrichment_uberon_v019_2=UBERON:0001782,6.11e-30,3;UBERON:0005424,6.11e-30,3;UBERON:0000966,1.63e-26,6;UBERON:0005388,1.63e-26,6;UBERON:0001802,1.63e-26,6;UBERON:0001781,1.23e-22,4;UBERON:0001905,5.20e-21,2;UBERON:0002757,5.20e-21,2;UBERON:0010134,5.20e-21,2;UBERON:0005408,5.20e-21,2;UBERON:0001899,5.20e-21,2;UBERON:0000970,1.13e-11,21;UBERON:0002104,1.13e-11,21;UBERON:0003296,5.44e-11,4;UBERON:0010133,5.44e-11,4;UBERON:0002784,5.44e-11,4;UBERON:0000020,3.36e-10,24;UBERON:0001032,3.36e-10,24;UBERON:0004456,3.36e-10,24;UBERON:0007625,1.32e-08,11;UBERON:0000019,3.98e-08,20;UBERON:0000047,3.98e-08,20;UBERON:0010312,3.98e-08,20;UBERON:0004088,3.98e-08,20;UBERON:0010230,3.98e-08,20;UBERON:0003072,3.98e-08,20;UBERON:0004128,3.98e-08,20;UBERON:0003071,3.98e-08,20;UBERON:0001456,2.11e-07,22|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.232387885739037,0.621966330092223,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0.12624243342638,327.839628230469,64.9380323449072,94.9461322401381,34.214489204541,173.88129016132,285.025561893878,312.122464432591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.89835287767695,2.62411716559765,5.85681110395745,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9676842561399,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=283652 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20611 | |||
|TSSclassifier=S | |||
|UniProt=A5X8Z9 | |||
|association_with_transcript=0bp_to_ENST00000449382_5end | |||
|coexpression_cluster_id=C58 | |||
|description=CAGE_peak_2_at_SLC24A5_5end | |||
|id=chr15:48413211..48413239,+ | |||
|ontology_enrichment_celltype=CL:0000147!2.25e-46!14;CL:0000148!3.38e-37!10;CL:0000541!3.38e-37!10;CL:0000149!2.90e-19!4;CL:0000710!9.27e-18!20;CL:0002567!3.74e-15!3;CL:0000325!5.92e-15!39;CL:0002586!1.04e-14!3;CL:0000075!1.02e-12!27;CL:0002077!4.20e-10!33;CL:0000453!1.03e-08!5;CL:0002322!2.04e-08!5;CL:0000333!2.24e-07!41 | |||
|ontology_enrichment_celltype_v019=CL:0000147;2.66e-70;14!CL:0000148;2.67e-49;10!CL:0000149;8.79e-40;4!CL:0002567;6.66e-31;3!CL:0002586;6.75e-30;3!CL:0000710;2.25e-24;20!CL:0000075;6.83e-18;27!CL:0002077;1.62e-12;34!CL:0002566;8.62e-12;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000147,2.47e-70,14;CL:0000148,2.67e-49,10;CL:0000541,2.67e-49,10;CL:0000149,7.95e-40,4;CL:0002567,6.66e-31,3;CL:0002586,6.11e-30,3;CL:0000710,2.25e-24,20;CL:0000075,6.83e-18,27;CL:0002077,4.53e-14,34;CL:0002566,8.62e-12,1;CL:0000333,5.59e-11,41;CL:0000133,1.59e-07,59 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1909!1.15e-10!2 | |||
|ontology_enrichment_disease_v019=DOID:1909;3.65e-21;2!DOID:5409;1.24e-10;4 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,3.47e-21,2;DOID:5409,1.33e-10,4 | |||
|ontology_enrichment_uberon=UBERON:0001894!7.12e-23!7;UBERON:0006222!7.12e-23!7;UBERON:0003296!6.95e-19!4;UBERON:0010133!6.95e-19!4;UBERON:0000966!2.44e-15!5;UBERON:0005388!2.44e-15!5;UBERON:0001802!2.44e-15!5;UBERON:0001781!1.04e-14!3;UBERON:0001782!1.04e-14!3;UBERON:0005424!1.04e-14!3;UBERON:0001905!1.39e-10!2;UBERON:0002757!1.39e-10!2;UBERON:0010134!1.39e-10!2;UBERON:0002784!1.39e-10!2;UBERON:0005408!1.39e-10!2;UBERON:0001899!1.39e-10!2;UBERON:0000007!4.84e-10!2;UBERON:0003075!1.59e-09!86;UBERON:0007284!1.59e-09!86;UBERON:0005743!2.24e-09!86;UBERON:0002346!5.91e-09!90;UBERON:0000073!3.42e-08!94;UBERON:0001016!3.42e-08!94;UBERON:0001049!4.77e-07!57;UBERON:0005068!4.77e-07!57;UBERON:0006241!4.77e-07!57;UBERON:0007135!4.77e-07!57;UBERON:0002240!9.35e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;1.05e-31;5!UBERON:0005388;1.05e-31;5!UBERON:0001802;1.05e-31;5!UBERON:0001781;6.75e-30;3!UBERON:0001782;6.75e-30;3!UBERON:0001905;4.95e-21;2!UBERON:0002757;4.95e-21;2!UBERON:0010134;4.95e-21;2!UBERON:0005408;4.95e-21;2!UBERON:0001899;4.95e-21;2!UBERON:0000970;2.99e-12;20!UBERON:0002104;1.16e-11;21!UBERON:0003296;5.31e-11;4!UBERON:0010133;5.31e-11;4!UBERON:0002784;5.31e-11;4!UBERON:0000020;1.22e-10;23!UBERON:0001032;3.42e-10;24!UBERON:0004456;3.42e-10;24!UBERON:0007625;1.36e-08;11!UBERON:0000019;1.55e-08;19!UBERON:0000047;1.55e-08;19!UBERON:0004088;1.55e-08;19!UBERON:0010230;1.55e-08;19!UBERON:0001456;9.72e-08;21!UBERON:0010371;1.25e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,6.11e-30,3;UBERON:0005424,6.11e-30,3;UBERON:0000966,1.63e-26,6;UBERON:0005388,1.63e-26,6;UBERON:0001802,1.63e-26,6;UBERON:0001781,1.23e-22,4;UBERON:0001905,5.20e-21,2;UBERON:0002757,5.20e-21,2;UBERON:0010134,5.20e-21,2;UBERON:0005408,5.20e-21,2;UBERON:0001899,5.20e-21,2;UBERON:0000970,1.13e-11,21;UBERON:0002104,1.13e-11,21;UBERON:0003296,5.44e-11,4;UBERON:0010133,5.44e-11,4;UBERON:0002784,5.44e-11,4;UBERON:0000020,3.36e-10,24;UBERON:0001032,3.36e-10,24;UBERON:0004456,3.36e-10,24;UBERON:0007625,1.32e-08,11;UBERON:0000019,3.98e-08,20;UBERON:0000047,3.98e-08,20;UBERON:0010312,3.98e-08,20;UBERON:0004088,3.98e-08,20;UBERON:0010230,3.98e-08,20;UBERON:0003072,3.98e-08,20;UBERON:0004128,3.98e-08,20;UBERON:0003071,3.98e-08,20;UBERON:0001456,2.11e-07,22 | |||
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|short_description=p2@SLC24A5 | |||
}} |
Revision as of 07:15, 11 September 2013
Short description: | p2@SLC24A5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_SLC24A5_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | 0bp_to_ENST00000449382_5end |
EntrezGene: | SLC24A5 |
HGNC: | 20611 |
UniProt: | A5X8Z9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 2.47e-70 | 14 |
melanocyte | 2.67e-49 | 10 |
melanoblast | 2.67e-49 | 10 |
visual pigment cell | 7.95e-40 | 4 |
light melanocyte | 6.66e-31 | 3 |
retinal pigment epithelial cell | 6.11e-30 | 3 |
neurecto-epithelial cell | 2.25e-24 | 20 |
columnar/cuboidal epithelial cell | 6.83e-18 | 27 |
ecto-epithelial cell | 4.53e-14 | 34 |
dark melanocyte | 8.62e-12 | 1 |
migratory neural crest cell | 5.59e-11 | 41 |
neurectodermal cell | 1.59e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 6.11e-30 | 3 |
presumptive retinal pigmented epithelium | 6.11e-30 | 3 |
retina | 1.63e-26 | 6 |
photoreceptor array | 1.63e-26 | 6 |
posterior segment of eyeball | 1.63e-26 | 6 |
layer of retina | 1.23e-22 | 4 |
pineal body | 5.20e-21 | 2 |
regional part of epithalamus | 5.20e-21 | 2 |
secretory circumventricular organ | 5.20e-21 | 2 |
circumventricular organ | 5.20e-21 | 2 |
epithalamus | 5.20e-21 | 2 |
eye | 1.13e-11 | 21 |
visual system | 1.13e-11 | 21 |
gland of diencephalon | 5.44e-11 | 4 |
neuroendocrine gland | 5.44e-11 | 4 |
regional part of diencephalon | 5.44e-11 | 4 |
sense organ | 3.36e-10 | 24 |
sensory system | 3.36e-10 | 24 |
entire sense organ system | 3.36e-10 | 24 |
pigment epithelium of eye | 1.32e-08 | 11 |
camera-type eye | 3.98e-08 | 20 |
simple eye | 3.98e-08 | 20 |
immature eye | 3.98e-08 | 20 |
ocular region | 3.98e-08 | 20 |
eyeball of camera-type eye | 3.98e-08 | 20 |
optic cup | 3.98e-08 | 20 |
optic vesicle | 3.98e-08 | 20 |
eye primordium | 3.98e-08 | 20 |
face | 2.11e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
melanoma | 3.47e-21 | 2 |
lung small cell carcinoma | 1.33e-10 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.