FFCP PHASE1:Hg19::chr13:100633480..100633490,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=|TSSclassifier=S|UniProt=B4DP89|association_with_transcript=60bp_to_AK298232_5end|coexpression_cluster_id=C1024|description=CAGE_peak_3_at_AK298232_5end|id=chr13:100633480..100633490,+|ontology_enrichment_celltype=CL:0002322!4.67e-10!5;CL:0000128!9.89e-09!7;CL:0000126!9.89e-09!7;CL:0000127!9.89e-09!7;CL:0002453!9.89e-09!7;CL:0002319!2.93e-08!25;CL:0000133!2.02e-07!59|ontology_enrichment_celltype_v019=CL:0002322;7.14e-33;5!CL:0002321;3.51e-27;15!CL:0002603;1.39e-20;3!CL:0002575;6.21e-15;2!CL:0000333;1.12e-12;5!CL:0000540;5.54e-11;6!CL:0000404;5.54e-11;6!CL:0000128;3.95e-09;7!CL:0000126;3.95e-09;7!CL:0000127;3.95e-09;7!CL:0002319;1.51e-08;25!CL:0000669;6.75e-08;4|ontology_enrichment_celltype_v019_2=CL:0002322,2.15e-33,5;CL:0002603,9.34e-21,3;CL:0002575,7.93e-15,2;CL:0000133,1.10e-13,59;CL:0000333,3.41e-11,41;CL:0000540,4.94e-11,6;CL:0000031,4.94e-11,6;CL:0000404,4.94e-11,6;CL:0000221,6.88e-11,72;CL:0000128,3.34e-09,7;CL:0000126,3.34e-09,7;CL:0000127,3.34e-09,7;CL:0002453,3.34e-09,7;CL:0002319,1.32e-08,25;CL:0000047,2.18e-08,8;CL:0000669,7.61e-08,4|ontology_enrichment_development_v019=UBERON:0006215;2.39e-21;3!CL:0000031;5.54e-11;6|ontology_enrichment_disease=DOID:3095!9.47e-09!22;DOID:2994!9.47e-09!22;DOID:171!4.30e-08!10|ontology_enrichment_disease_v019=DOID:171;6.99e-11;10!DOID:169;1.19e-10;6!DOID:3371;2.11e-08;1!DOID:4549;2.11e-08;1!DOID:5861;2.11e-08;1!DOID:6496;2.11e-08;1!DOID:3095;2.21e-07;22!DOID:2994;2.21e-07;22|ontology_enrichment_disease_v019_2=DOID:171,6.15e-11,10;DOID:169,1.22e-10,6;DOID:3371,2.52e-08,1;DOID:4549,2.52e-08,1;DOID:5861,2.52e-08,1;DOID:6496,2.52e-08,1;DOID:3095,2.16e-07,22;DOID:2994,2.16e-07,22|ontology_enrichment_uberon=UBERON:0001017!1.36e-30!82;UBERON:0000073!1.44e-30!94;UBERON:0001016!1.44e-30!94;UBERON:0005743!7.16e-30!86;UBERON:0002346!1.45e-24!90;UBERON:0001049!8.63e-23!57;UBERON:0005068!8.63e-23!57;UBERON:0006241!8.63e-23!57;UBERON:0007135!8.63e-23!57;UBERON:0000955!7.65e-21!69;UBERON:0006238!7.65e-21!69;UBERON:0003075!1.10e-20!86;UBERON:0007284!1.10e-20!86;UBERON:0002616!2.63e-20!59;UBERON:0000924!6.25e-18!173;UBERON:0006601!6.25e-18!173;UBERON:0003076!2.92e-17!15;UBERON:0003057!2.92e-17!15;UBERON:0004121!3.53e-15!169;UBERON:0000033!4.48e-14!123;UBERON:0004733!2.52e-13!12;UBERON:0002028!2.52e-13!12;UBERON:0007277!2.52e-13!12;UBERON:0000153!7.27e-13!129;UBERON:0007811!7.27e-13!129;UBERON:0002680!2.25e-12!9;UBERON:0001895!2.25e-12!9;UBERON:0010092!2.25e-12!9;UBERON:0004732!4.24e-12!13;UBERON:0002037!6.55e-12!6;UBERON:0006215!6.55e-12!6;UBERON:0000956!2.72e-11!25;UBERON:0000203!2.72e-11!25;UBERON:0001893!6.51e-11!34;UBERON:0002780!1.14e-10!41;UBERON:0001890!1.14e-10!41;UBERON:0006240!1.14e-10!41;UBERON:0003056!1.27e-10!61;UBERON:0001869!2.28e-10!32;UBERON:0003080!2.71e-10!42;UBERON:0002791!3.58e-10!33;UBERON:0002020!1.49e-09!34;UBERON:0003528!1.49e-09!34;UBERON:0002619!2.15e-08!22;UBERON:0001950!7.05e-08!20|ontology_enrichment_uberon_v019=UBERON:0002037;4.05e-40;6!UBERON:0002680;1.29e-26;9!UBERON:0001895;1.29e-26;9!UBERON:0004733;7.53e-20;12!UBERON:0002028;7.53e-20;12!UBERON:0004732;2.75e-18;13!UBERON:0000013;1.12e-12;5!UBERON:0002410;1.12e-12;5!UBERON:0000010;2.98e-07;8|ontology_enrichment_uberon_v019_2=UBERON:0002037,2.22e-40,6;UBERON:0006215,2.22e-40,6;UBERON:0002680,8.68e-27,9;UBERON:0001895,8.68e-27,9;UBERON:0010092,8.68e-27,9;UBERON:0003076,2.73e-21,15;UBERON:0003057,2.73e-21,15;UBERON:0004733,5.61e-20,12;UBERON:0002028,5.61e-20,12;UBERON:0007277,5.61e-20,12;UBERON:0004732,2.10e-18,13;UBERON:0000013,1.15e-12,5;UBERON:0002410,1.15e-12,5;UBERON:0001016,1.27e-11,89;UBERON:0001017,6.97e-08,81;UBERON:0000010,3.01e-07,8|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72369481307503,2.24400760368678,1.56727360739044,0.286235987131057,0.273748850145768,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661743720148475,0,0.175669571386252,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,1.05950199351452,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34171076742555,2.78312513475119,1.85910308591229,1.86589899027667,1.51392510525377,3.6497735907583,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0.134831308160164,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,1.04337364477569,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672786506072164,0.87192013766656,0.7333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76228387266739,0,0.773288812777695,0,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0,3.32861967686659,2.05886054286514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt=B4DP89 | |||
|association_with_transcript=60bp_to_AK298232_5end | |||
|coexpression_cluster_id=C1024 | |||
|description=CAGE_peak_3_at_AK298232_5end | |||
|id=chr13:100633480..100633490,+ | |||
|ontology_enrichment_celltype=CL:0002322!4.67e-10!5;CL:0000128!9.89e-09!7;CL:0000126!9.89e-09!7;CL:0000127!9.89e-09!7;CL:0002453!9.89e-09!7;CL:0002319!2.93e-08!25;CL:0000133!2.02e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002322;7.14e-33;5!CL:0002321;3.51e-27;15!CL:0002603;1.39e-20;3!CL:0002575;6.21e-15;2!CL:0000333;1.12e-12;5!CL:0000540;5.54e-11;6!CL:0000404;5.54e-11;6!CL:0000128;3.95e-09;7!CL:0000126;3.95e-09;7!CL:0000127;3.95e-09;7!CL:0002319;1.51e-08;25!CL:0000669;6.75e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.15e-33,5;CL:0002603,9.34e-21,3;CL:0002575,7.93e-15,2;CL:0000133,1.10e-13,59;CL:0000333,3.41e-11,41;CL:0000540,4.94e-11,6;CL:0000031,4.94e-11,6;CL:0000404,4.94e-11,6;CL:0000221,6.88e-11,72;CL:0000128,3.34e-09,7;CL:0000126,3.34e-09,7;CL:0000127,3.34e-09,7;CL:0002453,3.34e-09,7;CL:0002319,1.32e-08,25;CL:0000047,2.18e-08,8;CL:0000669,7.61e-08,4 | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.39e-21;3!CL:0000031;5.54e-11;6 | |||
|ontology_enrichment_disease=DOID:3095!9.47e-09!22;DOID:2994!9.47e-09!22;DOID:171!4.30e-08!10 | |||
|ontology_enrichment_disease_v019=DOID:171;6.99e-11;10!DOID:169;1.19e-10;6!DOID:3371;2.11e-08;1!DOID:4549;2.11e-08;1!DOID:5861;2.11e-08;1!DOID:6496;2.11e-08;1!DOID:3095;2.21e-07;22!DOID:2994;2.21e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,6.15e-11,10;DOID:169,1.22e-10,6;DOID:3371,2.52e-08,1;DOID:4549,2.52e-08,1;DOID:5861,2.52e-08,1;DOID:6496,2.52e-08,1;DOID:3095,2.16e-07,22;DOID:2994,2.16e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0001017!1.36e-30!82;UBERON:0000073!1.44e-30!94;UBERON:0001016!1.44e-30!94;UBERON:0005743!7.16e-30!86;UBERON:0002346!1.45e-24!90;UBERON:0001049!8.63e-23!57;UBERON:0005068!8.63e-23!57;UBERON:0006241!8.63e-23!57;UBERON:0007135!8.63e-23!57;UBERON:0000955!7.65e-21!69;UBERON:0006238!7.65e-21!69;UBERON:0003075!1.10e-20!86;UBERON:0007284!1.10e-20!86;UBERON:0002616!2.63e-20!59;UBERON:0000924!6.25e-18!173;UBERON:0006601!6.25e-18!173;UBERON:0003076!2.92e-17!15;UBERON:0003057!2.92e-17!15;UBERON:0004121!3.53e-15!169;UBERON:0000033!4.48e-14!123;UBERON:0004733!2.52e-13!12;UBERON:0002028!2.52e-13!12;UBERON:0007277!2.52e-13!12;UBERON:0000153!7.27e-13!129;UBERON:0007811!7.27e-13!129;UBERON:0002680!2.25e-12!9;UBERON:0001895!2.25e-12!9;UBERON:0010092!2.25e-12!9;UBERON:0004732!4.24e-12!13;UBERON:0002037!6.55e-12!6;UBERON:0006215!6.55e-12!6;UBERON:0000956!2.72e-11!25;UBERON:0000203!2.72e-11!25;UBERON:0001893!6.51e-11!34;UBERON:0002780!1.14e-10!41;UBERON:0001890!1.14e-10!41;UBERON:0006240!1.14e-10!41;UBERON:0003056!1.27e-10!61;UBERON:0001869!2.28e-10!32;UBERON:0003080!2.71e-10!42;UBERON:0002791!3.58e-10!33;UBERON:0002020!1.49e-09!34;UBERON:0003528!1.49e-09!34;UBERON:0002619!2.15e-08!22;UBERON:0001950!7.05e-08!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;4.05e-40;6!UBERON:0002680;1.29e-26;9!UBERON:0001895;1.29e-26;9!UBERON:0004733;7.53e-20;12!UBERON:0002028;7.53e-20;12!UBERON:0004732;2.75e-18;13!UBERON:0000013;1.12e-12;5!UBERON:0002410;1.12e-12;5!UBERON:0000010;2.98e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,2.22e-40,6;UBERON:0006215,2.22e-40,6;UBERON:0002680,8.68e-27,9;UBERON:0001895,8.68e-27,9;UBERON:0010092,8.68e-27,9;UBERON:0003076,2.73e-21,15;UBERON:0003057,2.73e-21,15;UBERON:0004733,5.61e-20,12;UBERON:0002028,5.61e-20,12;UBERON:0007277,5.61e-20,12;UBERON:0004732,2.10e-18,13;UBERON:0000013,1.15e-12,5;UBERON:0002410,1.15e-12,5;UBERON:0001016,1.27e-11,89;UBERON:0001017,6.97e-08,81;UBERON:0000010,3.01e-07,8 | |||
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|short_description=p3@AK298232 | |||
}} |
Revision as of 01:17, 11 September 2013
Short description: | p3@AK298232 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_AK298232_5end |
Coexpression cluster: | C1024_Pericytes_cerebellum_neuroblastoma_HES3GFP_iPS_extraskeletal_teratocarcinoma |
Association with transcript: | 60bp_to_AK298232_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.15e-33 | 5 |
astrocyte of the cerebellum | 9.34e-21 | 3 |
central nervous system pericyte | 7.93e-15 | 2 |
neurectodermal cell | 1.10e-13 | 59 |
migratory neural crest cell | 3.41e-11 | 41 |
neuron | 4.94e-11 | 6 |
neuroblast | 4.94e-11 | 6 |
electrically signaling cell | 4.94e-11 | 6 |
ectodermal cell | 6.88e-11 | 72 |
oligodendrocyte | 3.34e-09 | 7 |
macroglial cell | 3.34e-09 | 7 |
astrocyte | 3.34e-09 | 7 |
oligodendrocyte precursor cell | 3.34e-09 | 7 |
neural cell | 1.32e-08 | 25 |
neuronal stem cell | 2.18e-08 | 8 |
pericyte cell | 7.61e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 2.22e-40 | 6 |
rhombic lip | 2.22e-40 | 6 |
regional part of metencephalon | 8.68e-27 | 9 |
metencephalon | 8.68e-27 | 9 |
future metencephalon | 8.68e-27 | 9 |
posterior neural tube | 2.73e-21 | 15 |
chordal neural plate | 2.73e-21 | 15 |
segmental subdivision of hindbrain | 5.61e-20 | 12 |
hindbrain | 5.61e-20 | 12 |
presumptive hindbrain | 5.61e-20 | 12 |
segmental subdivision of nervous system | 2.10e-18 | 13 |
sympathetic nervous system | 1.15e-12 | 5 |
autonomic nervous system | 1.15e-12 | 5 |
nervous system | 1.27e-11 | 89 |
central nervous system | 6.97e-08 | 81 |
peripheral nervous system | 3.01e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 6.15e-11 | 10 |
neuroendocrine tumor | 1.22e-10 | 6 |
chondrosarcoma | 2.52e-08 | 1 |
extraosseous chondrosarcoma | 2.52e-08 | 1 |
myxoid chondrosarcoma | 2.52e-08 | 1 |
extraskeletal myxoid chondrosarcoma | 2.52e-08 | 1 |
germ cell and embryonal cancer | 2.16e-07 | 22 |
germ cell cancer | 2.16e-07 | 22 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.