FFCP PHASE1:Hg19::chr12:113796443..113796454,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=196463|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=27283|TSSclassifier=S|UniProt=|association_with_transcript=-104bp_to_ENST00000548997_5end|coexpression_cluster_id=C1|description=CAGE_peak_3_at_PLBD2_5end|id=chr12:113796443..113796454,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000784;7.92e-25;3!CL:0000451;1.78e-07;10|ontology_enrichment_celltype_v019_2=CL:0000784,7.02e-25,3;CL:0000451,1.73e-07,10|ontology_enrichment_development_v019=UBERON:0009117;2.52e-08;10!UBERON:0005564;2.52e-08;10!UBERON:0006215;2.71e-07;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.30e-25!82;UBERON:0005743!1.61e-24!86;UBERON:0001049!6.98e-24!57;UBERON:0005068!6.98e-24!57;UBERON:0006241!6.98e-24!57;UBERON:0007135!6.98e-24!57;UBERON:0002616!1.01e-22!59;UBERON:0000073!2.15e-22!94;UBERON:0001016!2.15e-22!94;UBERON:0000955!2.81e-22!69;UBERON:0006238!2.81e-22!69;UBERON:0003075!4.00e-16!86;UBERON:0007284!4.00e-16!86;UBERON:0002780!1.81e-15!41;UBERON:0001890!1.81e-15!41;UBERON:0006240!1.81e-15!41;UBERON:0003080!6.97e-15!42;UBERON:0002346!9.26e-15!90;UBERON:0007023!1.03e-13!115;UBERON:0001893!8.72e-13!34;UBERON:0002020!8.90e-13!34;UBERON:0003528!8.90e-13!34;UBERON:0002791!6.96e-12!33;UBERON:0002619!3.43e-11!22;UBERON:0001869!5.02e-11!32;UBERON:0003076!9.54e-11!15;UBERON:0003057!9.54e-11!15;UBERON:0004733!5.59e-10!12;UBERON:0002028!5.59e-10!12;UBERON:0007277!5.59e-10!12;UBERON:0000033!7.26e-10!123;UBERON:0003056!9.00e-10!61;UBERON:0004121!1.20e-09!169;UBERON:0001950!1.95e-09!20;UBERON:0000956!2.77e-09!25;UBERON:0000203!2.77e-09!25;UBERON:0000924!4.78e-09!173;UBERON:0006601!4.78e-09!173;UBERON:0004732!5.71e-09!13;UBERON:0000153!8.90e-09!129;UBERON:0007811!8.90e-09!129;UBERON:0002298!4.20e-08!8;UBERON:0002680!7.30e-07!9;UBERON:0001895!7.30e-07!9;UBERON:0010092!7.30e-07!9|ontology_enrichment_uberon_v019=UBERON:0002902;2.97e-19;1!UBERON:0009899;2.97e-19;1!UBERON:0004733;4.22e-14;12!UBERON:0002028;4.22e-14;12!UBERON:0004732;4.56e-13;13!UBERON:0002298;6.12e-13;6!UBERON:0001875;2.60e-10;2!UBERON:0006514;2.60e-10;2!UBERON:0000473;3.52e-10;8!UBERON:0002680;6.10e-09;9!UBERON:0001895;6.10e-09;9!UBERON:0003135;1.20e-07;11!UBERON:0000988;2.71e-07;3!UBERON:0001896;2.71e-07;3!UBERON:0005290;2.71e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0002902,5.62e-19,1;UBERON:0009899,5.62e-19,1;UBERON:0004733,3.61e-14,12;UBERON:0002028,3.61e-14,12;UBERON:0007277,3.61e-14,12;UBERON:0004732,3.94e-13,13;UBERON:0002298,5.42e-13,6;UBERON:0003076,1.82e-11,15;UBERON:0003057,1.82e-11,15;UBERON:0001875,2.49e-10,2;UBERON:0006514,2.49e-10,2;UBERON:0000473,3.52e-10,8;UBERON:0002680,5.20e-09,9;UBERON:0001895,5.20e-09,9;UBERON:0010092,5.20e-09,9;UBERON:0000073,2.16e-08,53;UBERON:0002616,2.16e-08,53;UBERON:0001049,5.95e-08,56;UBERON:0005068,5.95e-08,56;UBERON:0006241,5.95e-08,56;UBERON:0007135,5.95e-08,56;UBERON:0003135,1.20e-07,11;UBERON:0007023,1.97e-07,114;UBERON:0000988,2.32e-07,3;UBERON:0001896,2.79e-07,3;UBERON:0005290,2.79e-07,3;UBERON:0010096,2.79e-07,3|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.730310090387373,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0.0774672005803016,0,0,0,0.200544447470142,0,0.223915474239924,0,0.257575567634187,0.145398238779565,0.755751887377619,0,0.464858073811369,0.411167888021826,0.619412741790207,0,0,0,0.689491361473237,0,0,0.376484679085209,0.818718450173537,0.449446968890169,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0.217188844705117,0.605399502633369,0.368277635987565,0.316462387440884,0.211255286311942,0,0,0,0,0,0.285012743741249,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34362744548263,0.253019692019503,0,0,0,0.150575119077773,0,0,0,0,0,0,0.144824403882799,0,0,0.12786256184353,0,0,0,0,0,0,0,0,6.48346423713678,0,0,0.324547393654683,0.174129737299267,0.398873881556595,0.953962497221368,1.71598473234038,1.11437250398869,0,0,0,1.13061588384802,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0.573673241497627,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0.23486899728753,0,0.140450806702248,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0.150238058906597,0,0,0,0.211931901159562,0,0,0,0,0,0,0.252433774244115,0.0920498986422993,0,0,0,0.169560592310488,0,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0.148631162288728,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0.128343036279748,0,0,0.773288812777695,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0.195801157462741,0,0.206768026122887,0.215714200818617,0.106727557803444,0,0,0,0,0.153461973288062,0,0,0,0.160853921143607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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=196463 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27283 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-104bp_to_ENST00000548997_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_3_at_PLBD2_5end | |||
|id=chr12:113796443..113796454,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000784;7.92e-25;3!CL:0000451;1.78e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000784,7.02e-25,3;CL:0000451,1.73e-07,10 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.52e-08;10!UBERON:0005564;2.52e-08;10!UBERON:0006215;2.71e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.30e-25!82;UBERON:0005743!1.61e-24!86;UBERON:0001049!6.98e-24!57;UBERON:0005068!6.98e-24!57;UBERON:0006241!6.98e-24!57;UBERON:0007135!6.98e-24!57;UBERON:0002616!1.01e-22!59;UBERON:0000073!2.15e-22!94;UBERON:0001016!2.15e-22!94;UBERON:0000955!2.81e-22!69;UBERON:0006238!2.81e-22!69;UBERON:0003075!4.00e-16!86;UBERON:0007284!4.00e-16!86;UBERON:0002780!1.81e-15!41;UBERON:0001890!1.81e-15!41;UBERON:0006240!1.81e-15!41;UBERON:0003080!6.97e-15!42;UBERON:0002346!9.26e-15!90;UBERON:0007023!1.03e-13!115;UBERON:0001893!8.72e-13!34;UBERON:0002020!8.90e-13!34;UBERON:0003528!8.90e-13!34;UBERON:0002791!6.96e-12!33;UBERON:0002619!3.43e-11!22;UBERON:0001869!5.02e-11!32;UBERON:0003076!9.54e-11!15;UBERON:0003057!9.54e-11!15;UBERON:0004733!5.59e-10!12;UBERON:0002028!5.59e-10!12;UBERON:0007277!5.59e-10!12;UBERON:0000033!7.26e-10!123;UBERON:0003056!9.00e-10!61;UBERON:0004121!1.20e-09!169;UBERON:0001950!1.95e-09!20;UBERON:0000956!2.77e-09!25;UBERON:0000203!2.77e-09!25;UBERON:0000924!4.78e-09!173;UBERON:0006601!4.78e-09!173;UBERON:0004732!5.71e-09!13;UBERON:0000153!8.90e-09!129;UBERON:0007811!8.90e-09!129;UBERON:0002298!4.20e-08!8;UBERON:0002680!7.30e-07!9;UBERON:0001895!7.30e-07!9;UBERON:0010092!7.30e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0002902;2.97e-19;1!UBERON:0009899;2.97e-19;1!UBERON:0004733;4.22e-14;12!UBERON:0002028;4.22e-14;12!UBERON:0004732;4.56e-13;13!UBERON:0002298;6.12e-13;6!UBERON:0001875;2.60e-10;2!UBERON:0006514;2.60e-10;2!UBERON:0000473;3.52e-10;8!UBERON:0002680;6.10e-09;9!UBERON:0001895;6.10e-09;9!UBERON:0003135;1.20e-07;11!UBERON:0000988;2.71e-07;3!UBERON:0001896;2.71e-07;3!UBERON:0005290;2.71e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002902,5.62e-19,1;UBERON:0009899,5.62e-19,1;UBERON:0004733,3.61e-14,12;UBERON:0002028,3.61e-14,12;UBERON:0007277,3.61e-14,12;UBERON:0004732,3.94e-13,13;UBERON:0002298,5.42e-13,6;UBERON:0003076,1.82e-11,15;UBERON:0003057,1.82e-11,15;UBERON:0001875,2.49e-10,2;UBERON:0006514,2.49e-10,2;UBERON:0000473,3.52e-10,8;UBERON:0002680,5.20e-09,9;UBERON:0001895,5.20e-09,9;UBERON:0010092,5.20e-09,9;UBERON:0000073,2.16e-08,53;UBERON:0002616,2.16e-08,53;UBERON:0001049,5.95e-08,56;UBERON:0005068,5.95e-08,56;UBERON:0006241,5.95e-08,56;UBERON:0007135,5.95e-08,56;UBERON:0003135,1.20e-07,11;UBERON:0007023,1.97e-07,114;UBERON:0000988,2.32e-07,3;UBERON:0001896,2.79e-07,3;UBERON:0005290,2.79e-07,3;UBERON:0010096,2.79e-07,3 | |||
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|short_description=p3@PLBD2 | |||
}} |
Revision as of 21:00, 10 September 2013
Short description: | p3@PLBD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_PLBD2_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | -104bp_to_ENST00000548997_5end |
EntrezGene: | PLBD2 |
HGNC: | 27283 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 7.02e-25 | 3 |
dendritic cell | 1.73e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
occipital pole | 5.62e-19 | 1 |
pole of cerebral hemisphere | 5.62e-19 | 1 |
segmental subdivision of hindbrain | 3.61e-14 | 12 |
hindbrain | 3.61e-14 | 12 |
presumptive hindbrain | 3.61e-14 | 12 |
segmental subdivision of nervous system | 3.94e-13 | 13 |
brainstem | 5.42e-13 | 6 |
posterior neural tube | 1.82e-11 | 15 |
chordal neural plate | 1.82e-11 | 15 |
globus pallidus | 2.49e-10 | 2 |
pallidum | 2.49e-10 | 2 |
testis | 3.52e-10 | 8 |
regional part of metencephalon | 5.20e-09 | 9 |
metencephalon | 5.20e-09 | 9 |
future metencephalon | 5.20e-09 | 9 |
regional part of nervous system | 2.16e-08 | 53 |
regional part of brain | 2.16e-08 | 53 |
neural tube | 5.95e-08 | 56 |
neural rod | 5.95e-08 | 56 |
future spinal cord | 5.95e-08 | 56 |
neural keel | 5.95e-08 | 56 |
male reproductive organ | 1.20e-07 | 11 |
adult organism | 1.97e-07 | 114 |
pons | 2.32e-07 | 3 |
medulla oblongata | 2.79e-07 | 3 |
myelencephalon | 2.79e-07 | 3 |
future myelencephalon | 2.79e-07 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.