FFCP PHASE1:Hg19::chr11:36589527..36589538,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5896|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9831|TSSclassifier=S|UniProt=P15918|association_with_transcript=-24bp_to_NM_000448,uc001mwu.3_5end|coexpression_cluster_id=C28|description=CAGE_peak_2_at_RAG1_5end|id=chr11:36589527..36589538,+|ontology_enrichment_celltype=CL:0001024!3.01e-10!1|ontology_enrichment_celltype_v019=CL:0000817;1.30e-19;1|ontology_enrichment_celltype_v019_2=CL:0000817,2.05e-07,3|ontology_enrichment_development_v019=UBERON:0006965;2.17e-10;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!1.29e-12!7;UBERON:0002370!1.81e-10!4;UBERON:0005058!1.81e-10!4;UBERON:0009113!1.81e-10!4;UBERON:0003295!1.81e-10!4;UBERON:0005562!1.81e-10!4;UBERON:0000974!4.82e-09!10;UBERON:0003351!2.95e-07!6|ontology_enrichment_uberon_v019=UBERON:0002370;1.30e-37;2!UBERON:0005058;1.30e-37;2!UBERON:0009113;1.30e-37;2!UBERON:0004177;1.05e-15;5!UBERON:0005057;1.05e-15;5!UBERON:0000341;2.72e-10;2|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.26e-19,4;UBERON:0005058,2.26e-19,4;UBERON:0009113,2.26e-19,4;UBERON:0003295,2.26e-19,4;UBERON:0005562,2.26e-19,4;UBERON:0000974,4.72e-17,10;UBERON:0003351,2.95e-13,6;UBERON:0004177,1.68e-11,7;UBERON:0005057,1.68e-11,7;UBERON:0000341,2.72e-10,2;UBERON:0003408,2.53e-08,10;UBERON:0001042,2.53e-08,10;UBERON:0009145,2.53e-08,10;UBERON:0006562,1.20e-07,11;UBERON:0009722,1.20e-07,11;UBERON:0007690,1.20e-07,11|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542270404062111,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,2.63384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.953962497221368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.29755719297581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.4565747701498,13.7303757662439,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.15353087370155,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49837315502381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.644578879735772,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.09483760902862,133.699043360533,81.1316515846863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.648404156459,0|short_description=p2@RAG1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=5896 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9831 | |||
|TSSclassifier=S | |||
|UniProt=P15918 | |||
|association_with_transcript=-24bp_to_NM_000448,uc001mwu.3_5end | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_2_at_RAG1_5end | |||
|id=chr11:36589527..36589538,+ | |||
|ontology_enrichment_celltype=CL:0001024!3.01e-10!1 | |||
|ontology_enrichment_celltype_v019=CL:0000817;1.30e-19;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000817,2.05e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0006965;2.17e-10;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!1.29e-12!7;UBERON:0002370!1.81e-10!4;UBERON:0005058!1.81e-10!4;UBERON:0009113!1.81e-10!4;UBERON:0003295!1.81e-10!4;UBERON:0005562!1.81e-10!4;UBERON:0000974!4.82e-09!10;UBERON:0003351!2.95e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.30e-37;2!UBERON:0005058;1.30e-37;2!UBERON:0009113;1.30e-37;2!UBERON:0004177;1.05e-15;5!UBERON:0005057;1.05e-15;5!UBERON:0000341;2.72e-10;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.26e-19,4;UBERON:0005058,2.26e-19,4;UBERON:0009113,2.26e-19,4;UBERON:0003295,2.26e-19,4;UBERON:0005562,2.26e-19,4;UBERON:0000974,4.72e-17,10;UBERON:0003351,2.95e-13,6;UBERON:0004177,1.68e-11,7;UBERON:0005057,1.68e-11,7;UBERON:0000341,2.72e-10,2;UBERON:0003408,2.53e-08,10;UBERON:0001042,2.53e-08,10;UBERON:0009145,2.53e-08,10;UBERON:0006562,1.20e-07,11;UBERON:0009722,1.20e-07,11;UBERON:0007690,1.20e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542270404062111,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,2.63384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.953962497221368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.29755719297581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.4565747701498,13.7303757662439,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.15353087370155,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49837315502381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.644578879735772,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.09483760902862,133.699043360533,81.1316515846863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.648404156459,0 | |||
|short_description=p2@RAG1 | |||
}} |
Revision as of 17:43, 10 September 2013
Short description: | p2@RAG1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_RAG1_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | -24bp_to_NM_000448, uc001mwu.3_5end |
EntrezGene: | RAG1 |
HGNC: | 9831 |
UniProt: | P15918 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
precursor B cell | 2.05e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
thymus | 2.26e-19 | 4 |
hemolymphoid system gland | 2.26e-19 | 4 |
thymic region | 2.26e-19 | 4 |
pharyngeal gland | 2.26e-19 | 4 |
thymus primordium | 2.26e-19 | 4 |
neck | 4.72e-17 | 10 |
pharyngeal epithelium | 2.95e-13 | 6 |
hemopoietic organ | 1.68e-11 | 7 |
immune organ | 1.68e-11 | 7 |
throat | 2.72e-10 | 2 |
gland of gut | 2.53e-08 | 10 |
chordate pharynx | 2.53e-08 | 10 |
pharyngeal region of foregut | 2.53e-08 | 10 |
pharynx | 1.20e-07 | 11 |
entire pharyngeal arch endoderm | 1.20e-07 | 11 |
early pharyngeal endoderm | 1.20e-07 | 11 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.