FFCP PHASE1:Hg19::chr1:197886421..197886432,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=56956|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=14222|TSSclassifier=S|UniProt=|association_with_transcript=-56bp_to_ENST00000367388_5end|coexpression_cluster_id=C38|description=CAGE_peak_2_at_LHX9_5end|id=chr1:197886421..197886432,+|ontology_enrichment_celltype=CL:0002620!7.77e-34!23;CL:0000242!8.97e-09!2;CL:0000057!4.09e-08!75|ontology_enrichment_celltype_v019=CL:0002620;4.44e-54;23!CL:0000511;1.13e-11;1!CL:0002625;1.13e-11;1!CL:0000216;1.13e-11;1!CL:0000057;9.58e-07;73|ontology_enrichment_celltype_v019_2=CL:0002620,4.55e-54,23;CL:0000057,2.51e-15,76;CL:0000511,1.07e-11,1;CL:0002625,1.07e-11,1;CL:0000216,1.07e-11,1|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:17!7.26e-22!5;DOID:450!7.26e-22!5;DOID:66!7.26e-22!5;DOID:423!7.26e-22!5;DOID:0080000!7.26e-22!5;DOID:11722!7.26e-22!5|ontology_enrichment_disease_v019=DOID:17;1.82e-34;5!DOID:450;1.82e-34;5!DOID:66;1.82e-34;5!DOID:423;1.82e-34;5!DOID:0080000;1.82e-34;5!DOID:11722;1.82e-34;5!DOID:3371;2.63e-12;1!DOID:4549;2.63e-12;1!DOID:5861;2.63e-12;1!DOID:6496;2.63e-12;1!DOID:3093;2.44e-08;11|ontology_enrichment_disease_v019_2=DOID:17,1.82e-34,5;DOID:450,1.82e-34,5;DOID:66,1.82e-34,5;DOID:423,1.82e-34,5;DOID:0080000,1.82e-34,5;DOID:11722,1.82e-34,5;DOID:3371,2.63e-12,1;DOID:4549,2.63e-12,1;DOID:5861,2.63e-12,1;DOID:6496,2.63e-12,1;DOID:3093,2.47e-08,11|ontology_enrichment_uberon=UBERON:0002097!1.42e-23!40;UBERON:0002199!1.61e-20!45;UBERON:0002416!1.61e-20!45;UBERON:0000488!1.29e-09!4;UBERON:0003102!9.32e-08!95|ontology_enrichment_uberon_v019=UBERON:0002097;3.67e-22;41!UBERON:0002199;2.51e-16;46!UBERON:0002416;2.51e-16;46!UBERON:0003102;2.13e-14;50!UBERON:0001136;1.13e-11;1!UBERON:0001343;1.13e-11;1!UBERON:0004910;1.13e-11;1!UBERON:0004813;1.13e-11;1|ontology_enrichment_uberon_v019_2=UBERON:0002097,1.04e-29,41;UBERON:0002199,2.54e-26,46;UBERON:0002416,2.54e-26,46;UBERON:0001136,1.07e-11,1;UBERON:0001343,1.07e-11,1;UBERON:0004910,1.07e-11,1;UBERON:0005154,1.07e-11,1;UBERON:0005295,1.07e-11,1;UBERON:0004813,1.07e-11,1;UBERON:0005297,1.07e-11,1;UBERON:0005294,1.07e-11,1;UBERON:0010141,1.07e-11,1;UBERON:0005891,1.07e-11,1;UBERON:0003102,2.14e-11,99|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,1.60709189178915,0.443458794925128,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.9618733681743,37.3725430432493,0.847727604638247,8.70264178644767,8.65641245602887,7.21393512127762,8.18914167858995,0.675105328965065,0.876933046450788,8.83518209854401,9.57318945879913,0,20.9455659584802,20.6541801366663,3.05209066158878,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0.463721619900307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.21367859688319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520874984799877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,88.4326389448833,0.90392296312213,0,0,0,0,0,0,0,0,0,0,0,0,0,5.43616824294456,4.28871669880566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0.295282444544246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511164065356265,0,0,0,0,0.39669780522807,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0,0,0,0.468334905806882,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63140859494449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.23457967189298,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0,1.09394961803644,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.713520544665411,0,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0,0.829169439458779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406896178315738,0,0,0|short_description=p2@LHX9}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=56956 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14222 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-56bp_to_ENST00000367388_5end | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_2_at_LHX9_5end | |||
|id=chr1:197886421..197886432,+ | |||
|ontology_enrichment_celltype=CL:0002620!7.77e-34!23;CL:0000242!8.97e-09!2;CL:0000057!4.09e-08!75 | |||
|ontology_enrichment_celltype_v019=CL:0002620;4.44e-54;23!CL:0000511;1.13e-11;1!CL:0002625;1.13e-11;1!CL:0000216;1.13e-11;1!CL:0000057;9.58e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,4.55e-54,23;CL:0000057,2.51e-15,76;CL:0000511,1.07e-11,1;CL:0002625,1.07e-11,1;CL:0000216,1.07e-11,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!7.26e-22!5;DOID:450!7.26e-22!5;DOID:66!7.26e-22!5;DOID:423!7.26e-22!5;DOID:0080000!7.26e-22!5;DOID:11722!7.26e-22!5 | |||
|ontology_enrichment_disease_v019=DOID:17;1.82e-34;5!DOID:450;1.82e-34;5!DOID:66;1.82e-34;5!DOID:423;1.82e-34;5!DOID:0080000;1.82e-34;5!DOID:11722;1.82e-34;5!DOID:3371;2.63e-12;1!DOID:4549;2.63e-12;1!DOID:5861;2.63e-12;1!DOID:6496;2.63e-12;1!DOID:3093;2.44e-08;11 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.82e-34,5;DOID:450,1.82e-34,5;DOID:66,1.82e-34,5;DOID:423,1.82e-34,5;DOID:0080000,1.82e-34,5;DOID:11722,1.82e-34,5;DOID:3371,2.63e-12,1;DOID:4549,2.63e-12,1;DOID:5861,2.63e-12,1;DOID:6496,2.63e-12,1;DOID:3093,2.47e-08,11 | |||
|ontology_enrichment_uberon=UBERON:0002097!1.42e-23!40;UBERON:0002199!1.61e-20!45;UBERON:0002416!1.61e-20!45;UBERON:0000488!1.29e-09!4;UBERON:0003102!9.32e-08!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;3.67e-22;41!UBERON:0002199;2.51e-16;46!UBERON:0002416;2.51e-16;46!UBERON:0003102;2.13e-14;50!UBERON:0001136;1.13e-11;1!UBERON:0001343;1.13e-11;1!UBERON:0004910;1.13e-11;1!UBERON:0004813;1.13e-11;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,1.04e-29,41;UBERON:0002199,2.54e-26,46;UBERON:0002416,2.54e-26,46;UBERON:0001136,1.07e-11,1;UBERON:0001343,1.07e-11,1;UBERON:0004910,1.07e-11,1;UBERON:0005154,1.07e-11,1;UBERON:0005295,1.07e-11,1;UBERON:0004813,1.07e-11,1;UBERON:0005297,1.07e-11,1;UBERON:0005294,1.07e-11,1;UBERON:0010141,1.07e-11,1;UBERON:0005891,1.07e-11,1;UBERON:0003102,2.14e-11,99 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,1.60709189178915,0.443458794925128,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.9618733681743,37.3725430432493,0.847727604638247,8.70264178644767,8.65641245602887,7.21393512127762,8.18914167858995,0.675105328965065,0.876933046450788,8.83518209854401,9.57318945879913,0,20.9455659584802,20.6541801366663,3.05209066158878,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0.463721619900307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.21367859688319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520874984799877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,88.4326389448833,0.90392296312213,0,0,0,0,0,0,0,0,0,0,0,0,0,5.43616824294456,4.28871669880566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0.295282444544246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511164065356265,0,0,0,0,0.39669780522807,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0,0,0,0.468334905806882,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63140859494449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.23457967189298,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0,1.09394961803644,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.713520544665411,0,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0,0.829169439458779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | |||
|short_description=p2@LHX9 | |||
}} |
Revision as of 02:34, 12 September 2013
Short description: | p2@LHX9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_LHX9_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | -56bp_to_ENST00000367388_5end |
EntrezGene: | LHX9 |
HGNC: | 14222 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 4.55e-54 | 23 |
fibroblast | 2.51e-15 | 76 |
androgen binding protein secreting cell | 1.07e-11 | 1 |
seminiferous tubule epithelial cell | 1.07e-11 | 1 |
Sertoli cell | 1.07e-11 | 1 |
Ontology term | p-value | n |
---|---|---|
skin of body | 1.04e-29 | 41 |
integument | 2.54e-26 | 46 |
integumental system | 2.54e-26 | 46 |
mesothelium | 1.07e-11 | 1 |
seminiferous tubule of testis | 1.07e-11 | 1 |
epithelium of male gonad | 1.07e-11 | 1 |
epithelial cord | 1.07e-11 | 1 |
sex cord | 1.07e-11 | 1 |
seminiferous tubule epithelium | 1.07e-11 | 1 |
testis sex cord | 1.07e-11 | 1 |
genital ridge | 1.07e-11 | 1 |
primitive sex cord of indifferent gonad | 1.07e-11 | 1 |
coelomic epithelium | 1.07e-11 | 1 |
surface structure | 2.14e-11 | 99 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.82e-34 | 5 |
myotonic disease | 1.82e-34 | 5 |
muscle tissue disease | 1.82e-34 | 5 |
myopathy | 1.82e-34 | 5 |
muscular disease | 1.82e-34 | 5 |
myotonic dystrophy | 1.82e-34 | 5 |
chondrosarcoma | 2.63e-12 | 1 |
extraosseous chondrosarcoma | 2.63e-12 | 1 |
myxoid chondrosarcoma | 2.63e-12 | 1 |
extraskeletal myxoid chondrosarcoma | 2.63e-12 | 1 |
nervous system cancer | 2.47e-08 | 11 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.