Coexpression cluster:C9: Difference between revisions
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| ||
|tfbs_overrepresentation_for_novel_motifs=4.6902e-07,0,3.09072e-06,1.65693,0.765031,5.66212,0.000246973,0.0255794,3.51486e-07,0,7.29617e-06,1.69641,1.32063e-10,7.64939e-07,2.21195,2.20607,0.00151978,5.58197,3.56047e-05,0.00522112,10.0037,4.55268e-08,5.33318e-07,2.26516,4.19496e-05,0.00315244,3.10276e-05,0.0121288,3.60669e-08,1.16517e-05,4.14594e-08,1.01705,0.039549,0.00221254,8.00392e-15,0.00586124,0,0.000108731,1.93239,2.07309e-10,6.55238,0.00185147,0.00785671,17.5622,0,2.86236e-10,9.52847e-07,0.000138489,1.54697,0.0293401,0.00134131,1.06577e-06,1.09599e-05,0.00846382,1.30203,0.000251006,2.37391,0.000251899,8.28597e-06,1.29061e-06,0.0174966,2.65036e-06,0.774645,0.00981151,0.000162425,0.133332,1.02423,0.540457,0.263056,0.0215249,1.47582e-10,5.93221,0,1.48962,0,1.13542e-09,0.116633,0.0143393,5.16095,0.15357,3.10003,3.97056e-05,3.45107,1.36179,8.43095e-06,0,0,2.159e-05,1.65578e-06,1.53721,0.645823,0.00765329,4.55018,6.80066,0,2.40392,6.8481e-05,0.00521241,0.00188384,3.4635e-07,13.0784,0.744426,0.00102956,0.227668,0.169598,0,0.000458561,0.0360018,0.251148,0,4.26978e-07,0.0789732,3.16994e-05,9.47629e-05,3.83892,3.17669,0,0.000801106,0.0178671,1.63438,1.84901,3.97631,0.402769,0.062548,0.416188,0.0223829,0.101069,4.62595e-05,0.533918,0.0103665,1.90941,0.054437,7.92931,0.616026,1.35092,15.9674,3.49807,0.498163,0.00696716,0.113146,0.0517078,0.50609,0.229805,0.752186,0.391071,0.822692,10.5243,0.0550202,2.51914,7.96052e-14,6.26813e-16,0,0.55621,9.16972e-05,0.562474,1.77064,0.321085,1.20925e-06,0.0253075,4.24772e-09,1.20843,1.68108,0.0584641,7.29826e-06,18.7611,1.63506,4.75495e-05,1.01556,0 | |tfbs_overrepresentation_for_novel_motifs=4.6902e-07,0,3.09072e-06,1.65693,0.765031,5.66212,0.000246973,0.0255794,3.51486e-07,0,7.29617e-06,1.69641,1.32063e-10,7.64939e-07,2.21195,2.20607,0.00151978,5.58197,3.56047e-05,0.00522112,10.0037,4.55268e-08,5.33318e-07,2.26516,4.19496e-05,0.00315244,3.10276e-05,0.0121288,3.60669e-08,1.16517e-05,4.14594e-08,1.01705,0.039549,0.00221254,8.00392e-15,0.00586124,0,0.000108731,1.93239,2.07309e-10,6.55238,0.00185147,0.00785671,17.5622,0,2.86236e-10,9.52847e-07,0.000138489,1.54697,0.0293401,0.00134131,1.06577e-06,1.09599e-05,0.00846382,1.30203,0.000251006,2.37391,0.000251899,8.28597e-06,1.29061e-06,0.0174966,2.65036e-06,0.774645,0.00981151,0.000162425,0.133332,1.02423,0.540457,0.263056,0.0215249,1.47582e-10,5.93221,0,1.48962,0,1.13542e-09,0.116633,0.0143393,5.16095,0.15357,3.10003,3.97056e-05,3.45107,1.36179,8.43095e-06,0,0,2.159e-05,1.65578e-06,1.53721,0.645823,0.00765329,4.55018,6.80066,0,2.40392,6.8481e-05,0.00521241,0.00188384,3.4635e-07,13.0784,0.744426,0.00102956,0.227668,0.169598,0,0.000458561,0.0360018,0.251148,0,4.26978e-07,0.0789732,3.16994e-05,9.47629e-05,3.83892,3.17669,0,0.000801106,0.0178671,1.63438,1.84901,3.97631,0.402769,0.062548,0.416188,0.0223829,0.101069,4.62595e-05,0.533918,0.0103665,1.90941,0.054437,7.92931,0.616026,1.35092,15.9674,3.49807,0.498163,0.00696716,0.113146,0.0517078,0.50609,0.229805,0.752186,0.391071,0.822692,10.5243,0.0550202,2.51914,7.96052e-14,6.26813e-16,0,0.55621,9.16972e-05,0.562474,1.77064,0.321085,1.20925e-06,0.0253075,4.24772e-09,1.20843,1.68108,0.0584641,7.29826e-06,18.7611,1.63506,4.75495e-05,1.01556,0 | ||
|tfbs_overrepresentation_jaspar=MA0003.1;0,MA0004.1;3.81804e-08,MA0006.1;2.46868e-14,MA0007.1;0.0211067,MA0009.1;0.0494352,MA0014.1;0,MA0017.1;0.133478,MA0019.1;0.512234,MA0024.1;0.000792058,MA0025.1;0.0282292,MA0027.1;0.416905,MA0028.1;1.20445e-13,MA0029.1;5.61281,MA0030.1;2.83763,MA0031.1;1.21454,MA0038.1;0.00140545,MA0040.1;2.48734,MA0041.1;0.420897,MA0042.1;0.145359,MA0043.1;0.00261427,MA0046.1;0.381748,MA0048.1;3.18564e-06,MA0050.1;0.176464,MA0051.1;0.00926486,MA0052.1;6.58338,MA0055.1;3.05547e-13,MA0056.1;0,MA0057.1;0,MA0058.1;1.74408e-08,MA0059.1;8.51979e-05,MA0060.1;0,MA0061.1;3.73677e-14,MA0063.1;0,MA0066.1;0.276926,MA0067.1;0.00525729,MA0068.1;1.73386e-13,MA0069.1;0.21993,MA0070.1;2.28237,MA0071.1;0.168708,MA0072.1;0.127576,MA0073.1;0,MA0074.1;0.00894847,MA0076.1;0,MA0077.1;0.204379,MA0078.1;2.60173,MA0081.1;0.461913,MA0083.1;0.834935,MA0084.1;0.977484,MA0087.1;2.87557,MA0088.1;0,MA0089.1;0,MA0090.1;0.00213748,MA0091.1;0.466402,MA0092.1;0.625958,MA0093.1;4.20403e-12,MA0095.1;0,MA0098.1;0,MA0100.1;1.58229e-05,MA0101.1;4.77978e-07,MA0103.1;0.274832,MA0105.1;0,MA0106.1;0.000193938,MA0107.1;2.05613e-09,MA0108.2;1.04233,MA0109.1;0,MA0111.1;0.0452142,MA0113.1;1.23945,MA0114.1;0.00151293,MA0115.1;0.292859,MA0116.1;3.26569e-13,MA0117.1;0.139592,MA0119.1;0.000315565,MA0122.1;0.271186,MA0124.1;0.491129,MA0125.1;2.69886,MA0130.1;0,MA0131.1;2.6358e-09,MA0132.1;0,MA0133.1;0,MA0135.1;1.98892,MA0136.1;0.1056,MA0139.1;0,MA0140.1;0.129272,MA0141.1;1.12684,MA0142.1;1.81457,MA0143.1;2.40183,MA0144.1;4.12906e-06,MA0145.1;3.85731e-16,MA0146.1;0,MA0147.1;4.82164e-17,MA0148.1;2.70035,MA0149.1;0.00171412,MA0062.2;0,MA0035.2;1.50171,MA0039.2;0,MA0138.2;0.000171754,MA0002.2;0.0174947,MA0137.2;5.61314e-07,MA0104.2;0,MA0047.2;2.34805,MA0112.2;7.39157e-14,MA0065.2;1.26873e-10,MA0150.1;0.00697627,MA0151.1;0,MA0152.1;4.2862,MA0153.1;2.19418,MA0154.1;2.41082e-16,MA0155.1;0,MA0156.1;1.34597e-07,MA0157.1;1.23254,MA0158.1;0,MA0159.1;0.00072572,MA0160.1;1.00048,MA0161.1;0,MA0162.1;0,MA0163.1;0,MA0164.1;0.772278,MA0080.2;0.0169325,MA0018.2;0.000386687,MA0099.2;6.58586e-07,MA0079.2;0,MA0102.2;0.00932258,MA0258.1;0.0808181,MA0259.1;5.72811e-14,MA0442.1;0 | |||
}} | }} |
Revision as of 17:58, 22 January 2013
Full id: C9_skeletal_diaphragm_tongue_throat_penis_heart_left
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
p.value | FDR | nGenes | nPathway | Name |
---|---|---|---|---|
2.96423222134356e-05 | 0.00469089749027618 | 5 | 77 | Cardiac muscle contraction (KEGG):04260 |
2.02826217580356e-17 | 1.28388995728365e-14 | 11 | 39 | Striated Muscle Contraction (Wikipathways):WP383 |
2.22859365586649e-14 | 4.70233261387829e-12 | 10 | 49 | Muscle contraction (Reactome):REACT_17044 |
1.68536044335546e-15 | 5.33416580322003e-13 | 18 | 288 | {ACTB,297} (Static Module):NA |
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
GO ID | GO name | FDR corrected p-value |
---|---|---|
GO:0005737 | cytoplasm | 5.84508057077226e-22 |
GO:0008092 | cytoskeletal protein binding | 6.18597772724246e-20 |
GO:0006936 | muscle contraction | 7.75676601315851e-20 |
GO:0003012 | muscle system process | 7.75676601315851e-20 |
GO:0005515 | protein binding | 2.64883713940011e-16 |
GO:0003779 | actin binding | 7.49245505463142e-15 |
GO:0015629 | actin cytoskeleton | 3.88049338980805e-14 |
GO:0030016 | myofibril | 2.96968170829912e-13 |
GO:0044449 | contractile fiber part | 1.00055381205974e-12 |
GO:0043292 | contractile fiber | 1.78873099740804e-12 |
GO:0030017 | sarcomere | 5.96417457219915e-12 |
GO:0032501 | multicellular organismal process | 4.89928559535619e-11 |
GO:0044424 | intracellular part | 7.1744431214643e-11 |
GO:0008307 | structural constituent of muscle | 1.03357564996479e-10 |
GO:0005856 | cytoskeleton | 1.03357564996479e-10 |
GO:0003008 | system process | 5.49219186536165e-10 |
GO:0005865 | striated muscle thin filament | 1.08180289732067e-08 |
GO:0005622 | intracellular | 5.24911234039584e-08 |
GO:0006941 | striated muscle contraction | 1.4843932953812e-07 |
GO:0006937 | regulation of muscle contraction | 1.96808983031837e-07 |
GO:0043228 | non-membrane-bound organelle | 1.78986539834649e-06 |
GO:0043232 | intracellular non-membrane-bound organelle | 1.78986539834649e-06 |
GO:0007517 | muscle development | 6.05147814615926e-06 |
GO:0042805 | actinin binding | 1.52945022844802e-05 |
GO:0005523 | tropomyosin binding | 2.80898242828869e-05 |
GO:0005861 | troponin complex | 2.81655777793449e-05 |
GO:0044444 | cytoplasmic part | 4.33670601443041e-05 |
GO:0051128 | regulation of cellular component organization and biogenesis | 4.33670601443041e-05 |
GO:0016528 | sarcoplasm | 4.89568136726866e-05 |
GO:0016529 | sarcoplasmic reticulum | 4.89568136726866e-05 |
GO:0043229 | intracellular organelle | 6.23644543111371e-05 |
GO:0043226 | organelle | 6.23644543111371e-05 |
GO:0033017 | sarcoplasmic reticulum membrane | 0.000131823424199671 |
GO:0016043 | cellular component organization and biogenesis | 0.000180627816627694 |
GO:0044464 | cell part | 0.000180627816627694 |
GO:0014706 | striated muscle development | 0.000351315113132666 |
GO:0044430 | cytoskeletal part | 0.000409978534743296 |
GO:0042692 | muscle cell differentiation | 0.000471755166477821 |
GO:0007010 | cytoskeleton organization and biogenesis | 0.000591675017742988 |
GO:0031674 | I band | 0.000605607074658834 |
GO:0048856 | anatomical structure development | 0.000606512155234962 |
GO:0051393 | alpha-actinin binding | 0.000783440723107417 |
GO:0042802 | identical protein binding | 0.000827017923722662 |
GO:0033043 | regulation of organelle organization and biogenesis | 0.000873358288757126 |
GO:0051493 | regulation of cytoskeleton organization and biogenesis | 0.000873358288757126 |
GO:0051239 | regulation of multicellular organismal process | 0.00100429061821952 |
GO:0007519 | skeletal muscle development | 0.00169529047637057 |
GO:0045445 | myoblast differentiation | 0.00211741889432446 |
GO:0030315 | T-tubule | 0.0022284013303133 |
GO:0030054 | cell junction | 0.00223095607793252 |
GO:0005516 | calmodulin binding | 0.00237031477383059 |
GO:0032502 | developmental process | 0.00301834494125145 |
GO:0043197 | dendritic spine | 0.00308342160880935 |
GO:0006996 | organelle organization and biogenesis | 0.00347832292455856 |
GO:0030036 | actin cytoskeleton organization and biogenesis | 0.00366042120121629 |
GO:0004115 | 3',5'-cyclic-AMP phosphodiesterase activity | 0.00386912793625122 |
GO:0030239 | myofibril assembly | 0.00386912793625122 |
GO:0055001 | muscle cell development | 0.00386912793625122 |
GO:0055002 | striated muscle cell development | 0.00386912793625122 |
GO:0030029 | actin filament-based process | 0.00441762184542972 |
GO:0005924 | cell-substrate adherens junction | 0.00460027158375639 |
GO:0030425 | dendrite | 0.00460027158375639 |
GO:0006942 | regulation of striated muscle contraction | 0.00474517683569856 |
GO:0017022 | myosin binding | 0.00474517683569856 |
GO:0030055 | cell-matrix junction | 0.00508357761987715 |
GO:0007275 | multicellular organismal development | 0.00508357761987715 |
GO:0044446 | intracellular organelle part | 0.00556554366454887 |
GO:0048741 | skeletal muscle fiber development | 0.00556554366454887 |
GO:0048747 | muscle fiber development | 0.00556554366454887 |
GO:0051289 | protein homotetramerization | 0.00556554366454887 |
GO:0044422 | organelle part | 0.00559774677241763 |
GO:0048731 | system development | 0.00579537835131192 |
GO:0048628 | myoblast maturation | 0.00665613051230647 |
GO:0051261 | protein depolymerization | 0.00670839512511457 |
GO:0030832 | regulation of actin filament length | 0.00670839512511457 |
GO:0048513 | organ development | 0.00677156803041209 |
GO:0032535 | regulation of cellular component size | 0.00687309569234778 |
GO:0032956 | regulation of actin cytoskeleton organization and biogenesis | 0.00687309569234778 |
GO:0048627 | myoblast development | 0.00750061834364979 |
GO:0051129 | negative regulation of cellular component organization and biogenesis | 0.00901091391937087 |
GO:0009892 | negative regulation of metabolic process | 0.00901091391937087 |
GO:0005912 | adherens junction | 0.00982869401171141 |
GO:0031420 | alkali metal ion binding | 0.011593457516096 |
GO:0030018 | Z disc | 0.011593457516096 |
GO:0051146 | striated muscle cell differentiation | 0.014866013682799 |
GO:0042383 | sarcolemma | 0.014866013682799 |
GO:0006464 | protein modification process | 0.0158590477822919 |
GO:0051262 | protein tetramerization | 0.0164285329077875 |
GO:0048523 | negative regulation of cellular process | 0.0190365442393785 |
GO:0008022 | protein C-terminus binding | 0.0220281139174416 |
GO:0004683 | calmodulin-dependent protein kinase activity | 0.0235230305284405 |
GO:0031032 | actomyosin structure organization and biogenesis | 0.0235230305284405 |
GO:0048519 | negative regulation of biological process | 0.0235230305284405 |
GO:0048869 | cellular developmental process | 0.0235230305284405 |
GO:0030154 | cell differentiation | 0.0235230305284405 |
GO:0050789 | regulation of biological process | 0.0235230305284405 |
GO:0031114 | regulation of microtubule depolymerization | 0.024043130869995 |
GO:0007026 | negative regulation of microtubule depolymerization | 0.024043130869995 |
GO:0043412 | biopolymer modification | 0.0251759103610619 |
GO:0043005 | neuron projection | 0.0251759103610619 |
GO:0007019 | microtubule depolymerization | 0.0252734175393861 |
GO:0031111 | negative regulation of microtubule polymerization or depolymerization | 0.0252734175393861 |
GO:0019901 | protein kinase binding | 0.0262148152227074 |
GO:0005911 | intercellular junction | 0.0265427285789739 |
GO:0016323 | basolateral plasma membrane | 0.0275191733172084 |
GO:0043687 | post-translational protein modification | 0.0275191733172084 |
GO:0005884 | actin filament | 0.0275191733172084 |
GO:0003983 | UTP:glucose-1-phosphate uridylyltransferase activity | 0.0275191733172084 |
GO:0008917 | lipopolysaccharide N-acetylglucosaminyltransferase activity | 0.0275191733172084 |
GO:0051374 | FATZ 1 binding | 0.0275191733172084 |
GO:0008457 | beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity | 0.0275191733172084 |
GO:0046314 | phosphocreatine biosynthetic process | 0.0275191733172084 |
GO:0051370 | ZASP binding | 0.0275191733172084 |
GO:0006603 | phosphocreatine metabolic process | 0.0275191733172084 |
GO:0008267 | poly-glutamine tract binding | 0.0275191733172084 |
GO:0065007 | biological regulation | 0.027923016778358 |
GO:0005242 | inward rectifier potassium channel activity | 0.0282184659567741 |
GO:0019899 | enzyme binding | 0.0316290806153706 |
GO:0006006 | glucose metabolic process | 0.0336161625765224 |
GO:0031402 | sodium ion binding | 0.0336161625765224 |
GO:0000287 | magnesium ion binding | 0.0336161625765224 |
GO:0031110 | regulation of microtubule polymerization or depolymerization | 0.0336161625765224 |
GO:0019538 | protein metabolic process | 0.0350522903412054 |
GO:0019900 | kinase binding | 0.0359064097641044 |
GO:0051051 | negative regulation of transport | 0.0374320484306035 |
GO:0045892 | negative regulation of transcription, DNA-dependent | 0.038812120287955 |
GO:0031109 | microtubule polymerization or depolymerization | 0.0389265238697143 |
GO:0016775 | phosphotransferase activity, nitrogenous group as acceptor | 0.0389265238697143 |
GO:0051248 | negative regulation of protein metabolic process | 0.039618149860469 |
GO:0016564 | transcription repressor activity | 0.0426548167037951 |
GO:0006461 | protein complex assembly | 0.0426548167037951 |
GO:0043025 | cell soma | 0.0426548167037951 |
GO:0051049 | regulation of transport | 0.0426548167037951 |
GO:0006605 | protein targeting | 0.0426548167037951 |
GO:0005927 | muscle tendon junction | 0.0426548167037951 |
GO:0000301 | retrograde transport, vesicle recycling within Golgi | 0.0426548167037951 |
GO:0030240 | muscle thin filament assembly | 0.0426548167037951 |
GO:0006975 | DNA damage induced protein phosphorylation | 0.0426548167037951 |
GO:0051373 | FATZ binding | 0.0426548167037951 |
GO:0031014 | troponin T binding | 0.0426548167037951 |
GO:0006011 | UDP-glucose metabolic process | 0.0426548167037951 |
GO:0032387 | negative regulation of intracellular transport | 0.0426548167037951 |
GO:0000042 | protein targeting to Golgi | 0.0426548167037951 |
GO:0045747 | positive regulation of Notch signaling pathway | 0.0426548167037951 |
GO:0051371 | muscle alpha-actinin binding | 0.0426548167037951 |
GO:0051748 | UDP-sugar pyrophosphorylase activity | 0.0426548167037951 |
GO:0003989 | acetyl-CoA carboxylase activity | 0.0426548167037951 |
GO:0031013 | troponin I binding | 0.0426548167037951 |
GO:0004727 | prenylated protein tyrosine phosphatase activity | 0.0426548167037951 |
GO:0051015 | actin filament binding | 0.0490243234489225 |
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br>disease_data<br>
Ontology term | p-value | n |
---|---|---|
heart disease | 1.94e-15 | 2 |
vascular disease | 1.98e-08 | 1 |
ischemia | 1.98e-08 | 1 |
extrinsic cardiomyopathy | 1.98e-08 | 1 |
myocardial ischemia | 1.98e-08 | 1 |
myocardial infarction | 1.98e-08 | 1 |
cardiovascular system disease | 3.67e-08 | 4 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
MA0003.1 | 0 |
MA0004.1 | 3.81804e-08 |
MA0006.1 | 2.46868e-14 |
MA0007.1 | 0.0211067 |
MA0009.1 | 0.0494352 |
MA0014.1 | 0 |
MA0017.1 | 0.133478 |
MA0019.1 | 0.512234 |
MA0024.1 | 0.000792058 |
MA0025.1 | 0.0282292 |
MA0027.1 | 0.416905 |
MA0028.1 | 1.20445e-13 |
MA0029.1 | 5.61281 |
MA0030.1 | 2.83763 |
MA0031.1 | 1.21454 |
MA0038.1 | 0.00140545 |
MA0040.1 | 2.48734 |
MA0041.1 | 0.420897 |
MA0042.1 | 0.145359 |
MA0043.1 | 0.00261427 |
MA0046.1 | 0.381748 |
MA0048.1 | 3.18564e-06 |
MA0050.1 | 0.176464 |
MA0051.1 | 0.00926486 |
MA0052.1 | 6.58338 |
MA0055.1 | 3.05547e-13 |
MA0056.1 | 0 |
MA0057.1 | 0 |
MA0058.1 | 1.74408e-08 |
MA0059.1 | 8.51979e-05 |
MA0060.1 | 0 |
MA0061.1 | 3.73677e-14 |
MA0063.1 | 0 |
MA0066.1 | 0.276926 |
MA0067.1 | 0.00525729 |
MA0068.1 | 1.73386e-13 |
MA0069.1 | 0.21993 |
MA0070.1 | 2.28237 |
MA0071.1 | 0.168708 |
MA0072.1 | 0.127576 |
MA0073.1 | 0 |
MA0074.1 | 0.00894847 |
MA0076.1 | 0 |
MA0077.1 | 0.204379 |
MA0078.1 | 2.60173 |
MA0081.1 | 0.461913 |
MA0083.1 | 0.834935 |
MA0084.1 | 0.977484 |
MA0087.1 | 2.87557 |
MA0088.1 | 0 |
MA0089.1 | 0 |
MA0090.1 | 0.00213748 |
MA0091.1 | 0.466402 |
MA0092.1 | 0.625958 |
MA0093.1 | 4.20403e-12 |
MA0095.1 | 0 |
MA0098.1 | 0 |
MA0100.1 | 1.58229e-05 |
MA0101.1 | 4.77978e-07 |
MA0103.1 | 0.274832 |
MA0105.1 | 0 |
MA0106.1 | 0.000193938 |
MA0107.1 | 2.05613e-09 |
MA0108.2 | 1.04233 |
MA0109.1 | 0 |
MA0111.1 | 0.0452142 |
MA0113.1 | 1.23945 |
MA0114.1 | 0.00151293 |
MA0115.1 | 0.292859 |
MA0116.1 | 3.26569e-13 |
MA0117.1 | 0.139592 |
MA0119.1 | 0.000315565 |
MA0122.1 | 0.271186 |
MA0124.1 | 0.491129 |
MA0125.1 | 2.69886 |
MA0130.1 | 0 |
MA0131.1 | 2.6358e-09 |
MA0132.1 | 0 |
MA0133.1 | 0 |
MA0135.1 | 1.98892 |
MA0136.1 | 0.1056 |
MA0139.1 | 0 |
MA0140.1 | 0.129272 |
MA0141.1 | 1.12684 |
MA0142.1 | 1.81457 |
MA0143.1 | 2.40183 |
MA0144.1 | 4.12906e-06 |
MA0145.1 | 3.85731e-16 |
MA0146.1 | 0 |
MA0147.1 | 4.82164e-17 |
MA0148.1 | 2.70035 |
MA0149.1 | 0.00171412 |
MA0062.2 | 0 |
MA0035.2 | 1.50171 |
MA0039.2 | 0 |
MA0138.2 | 0.000171754 |
MA0002.2 | 0.0174947 |
MA0137.2 | 5.61314e-07 |
MA0104.2 | 0 |
MA0047.2 | 2.34805 |
MA0112.2 | 7.39157e-14 |
MA0065.2 | 1.26873e-10 |
MA0150.1 | 0.00697627 |
MA0151.1 | 0 |
MA0152.1 | 4.2862 |
MA0153.1 | 2.19418 |
MA0154.1 | 2.41082e-16 |
MA0155.1 | 0 |
MA0156.1 | 1.34597e-07 |
MA0157.1 | 1.23254 |
MA0158.1 | 0 |
MA0159.1 | 0.00072572 |
MA0160.1 | 1.00048 |
MA0161.1 | 0 |
MA0162.1 | 0 |
MA0163.1 | 0 |
MA0164.1 | 0.772278 |
MA0080.2 | 0.0169325 |
MA0018.2 | 0.000386687 |
MA0099.2 | 6.58586e-07 |
MA0079.2 | 0 |
MA0102.2 | 0.00932258 |
MA0258.1 | 0.0808181 |
MA0259.1 | 5.72811e-14 |
MA0442.1 | 0 |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
No analysis results for this cluster
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data