FFCP PHASE1:Mm9::chr1:173934659..173934666,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=1425|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr1:173934659..173934666,-|id=chr1:173934659..173934666,-|ontology_enrichment_celltype=CL:0000540!2.13e-13!33;CL:0000047!2.13e-13!33;CL:0000031!2.13e-13!33;CL:0000404!2.13e-13!33;CL:0000221!3.08e-12!44;CL:0000133!3.08e-12!44;CL:0002319!7.85e-12!43;CL:0000393!1.48e-11!39;CL:0000211!1.48e-11!39;CL:0000117!2.10e-11!23;CL:0000337!2.10e-11!23;CL:0000055!5.18e-10!50|ontology_enrichment_celltype_v019_2=CL:0000117,2.29e-22,23;CL:0000337,2.29e-22,23;CL:0000540,6.33e-15,33;CL:0000047,6.33e-15,33;CL:0000031,6.33e-15,33;CL:0000404,6.33e-15,33;CL:0002613,2.13e-12,3;CL:0000393,2.74e-12,39;CL:0000211,2.74e-12,39;CL:0002612,3.91e-12,3;CL:0002319,6.11e-11,43;CL:0000221,1.22e-10,44;CL:0000133,1.22e-10,44;CL:0002609,1.29e-10,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.05e-13!73;UBERON:0005743!2.05e-13!73;UBERON:0004121!6.18e-13!102;UBERON:0000924!6.18e-13!102;UBERON:0006601!6.18e-13!102;UBERON:0000073!2.07e-12!75;UBERON:0001016!2.07e-12!75;UBERON:0002346!2.03e-10!71;UBERON:0003075!2.03e-10!71;UBERON:0007284!2.03e-10!71;UBERON:0001049!1.79e-09!52;UBERON:0005068!1.79e-09!52;UBERON:0006241!1.79e-09!52;UBERON:0007135!1.79e-09!52;UBERON:0002020!2.17e-09!34;UBERON:0003056!1.81e-08!49;UBERON:0000033!2.78e-08!63;UBERON:0002780!1.87e-07!39;UBERON:0001890!1.87e-07!39;UBERON:0006240!1.87e-07!39;UBERON:0000153!1.99e-07!94;UBERON:0003080!2.43e-07!40;UBERON:0007811!3.18e-07!86;UBERON:0000955!3.63e-07!50;UBERON:0006238!3.63e-07!50;UBERON:0002616!5.28e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0002020,8.26e-17,34;UBERON:0001948,1.54e-12,5;UBERON:0002315,1.54e-12,5;UBERON:0002257,3.91e-12,3;UBERON:0001049,5.78e-12,52;UBERON:0005068,5.78e-12,52;UBERON:0006241,5.78e-12,52;UBERON:0007135,5.78e-12,52;UBERON:0000073,2.01e-11,54;UBERON:0010371,1.55e-10,73;UBERON:0002240,1.81e-10,6;UBERON:0005174,1.81e-10,6;UBERON:0001137,1.81e-10,6;UBERON:0003528,2.15e-09,29;UBERON:0002791,2.15e-09,29;UBERON:0001893,2.15e-09,29;UBERON:0002346,3.16e-09,64;UBERON:0003075,3.16e-09,64;UBERON:0007284,3.16e-09,64;UBERON:0001017,3.59e-09,73;UBERON:0001016,7.50e-09,75;UBERON:0004121,1.25e-08,95;UBERON:0000924,1.25e-08,95;UBERON:0006601,1.25e-08,95;UBERON:0002780,3.04e-08,39;UBERON:0001890,3.04e-08,39;UBERON:0006240,3.04e-08,39;UBERON:0003080,5.38e-08,40;UBERON:0000369,1.30e-07,5;UBERON:0002435,1.30e-07,5;UBERON:0000204,1.30e-07,5;UBERON:0010082,1.30e-07,5;UBERON:0002616,9.83e-07,46|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0.522399578277871,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.304130793658544,0.183546752161682,0.782391344348039,0.65407546914134,0,0.58328969722285,0.139986421625363,0,0,0,0,0,0.286533439938757,0,0.809265843438391,3.70293685490423,0.633831403506179,0,0,0,0,0,0.299600110518405,0.384218305321555,2.7996195323289,2.97013064329719,1.26194976810829,0.856952953211411,1.54607978666129,0.857435594504678,1.15014565221884,0.919218786610021,0,0.255374676170375,0.768032666281217,1.84640802822271,1.28082701043374,2.6045668527838,0,0.56276261003168,0.30559649555362,2.06240009831567,1.99320353118744,1.1183966749518,0,0,0.289864488701678,0,0,0,0,0,0,0,0,0,0.563373679106722,0,0,0,0.216491041011214,0.253359865475099,0,0.11418387971906,0,0,0.346970653532272,0.304465478312141,0,0.150722640552623,0,0,0,0,0,0,0.220841518460394,0,0,0,0,0,0.239630249011841,0,0,0.149790639404823,0,0.628271760564322,0.695297280769106,0,0,0,0.611036183101898,0,0,0,0.910843100738926,0,0.540186389416048,0.452114453507145,0.476255494059295,0.512454881139399,0.281105173679186,0.517406741478031,0.215567992932842,0,0.175951124163949,0.219195732427575,0.278047249225598,0.348252166522167,1.02891068203972,0.199034266818493,0,0,0,0.207125772535502,0,0.180062061461015,0.473489471170421,0.393528463494808,0.308534225774757,0,0,0,0.16455984991348,0.32833492815819,0,0,0.219550115291051,0,0.210289948564127,1.44066457330998,0,0,1.06644125267617,0.232236671860439,0.128867461322093,0.605050573870028,0,0,0,0,0,0.198956472041151,0,0,0.216138049874694,0,0.189667900953082,0.685491075658373,0,1.22190796707189,0.581857461502877,0.210407459670956,0.252946148497029,0,0,0,0,0.333690211432188,0,0,0,0,0,0.287696137450811,0,0,1.43768206527355,0,0,0,0.179397413521912,0,0.184753190166605,0.189491411770485,0.325929952884052,0.169745085775188,0,0,0,0,0.788175720530955,1.10732344824387,0.478364305972461,0.163863314715738,0,0,0,0,0,0,0.321101179975584,0,0.163934945376675,0,0.631016438832513,0.780877488593277,0.861693590931196,0.477937595905104,0,0.283076530788832,0.404810701674894,0.292255857911312,0.395287777946524,0.321321316421807,0.141940085208269,0.178065603667255,0.651547837414304,0.659880491890142,0,0.485561272309963,0.302323556964751,0.377210159511796,0,0.307435147943927,0.258428293168221,0,0,0,0,0,0,1.62054984628179,0.388076051348264,0.643011105094777,0.532020700926821,0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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=1425 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:173934659..173934666,- | |||
|id=chr1:173934659..173934666,- | |||
|ontology_enrichment_celltype=CL:0000540!2.13e-13!33;CL:0000047!2.13e-13!33;CL:0000031!2.13e-13!33;CL:0000404!2.13e-13!33;CL:0000221!3.08e-12!44;CL:0000133!3.08e-12!44;CL:0002319!7.85e-12!43;CL:0000393!1.48e-11!39;CL:0000211!1.48e-11!39;CL:0000117!2.10e-11!23;CL:0000337!2.10e-11!23;CL:0000055!5.18e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.29e-22,23;CL:0000337,2.29e-22,23;CL:0000540,6.33e-15,33;CL:0000047,6.33e-15,33;CL:0000031,6.33e-15,33;CL:0000404,6.33e-15,33;CL:0002613,2.13e-12,3;CL:0000393,2.74e-12,39;CL:0000211,2.74e-12,39;CL:0002612,3.91e-12,3;CL:0002319,6.11e-11,43;CL:0000221,1.22e-10,44;CL:0000133,1.22e-10,44;CL:0002609,1.29e-10,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.05e-13!73;UBERON:0005743!2.05e-13!73;UBERON:0004121!6.18e-13!102;UBERON:0000924!6.18e-13!102;UBERON:0006601!6.18e-13!102;UBERON:0000073!2.07e-12!75;UBERON:0001016!2.07e-12!75;UBERON:0002346!2.03e-10!71;UBERON:0003075!2.03e-10!71;UBERON:0007284!2.03e-10!71;UBERON:0001049!1.79e-09!52;UBERON:0005068!1.79e-09!52;UBERON:0006241!1.79e-09!52;UBERON:0007135!1.79e-09!52;UBERON:0002020!2.17e-09!34;UBERON:0003056!1.81e-08!49;UBERON:0000033!2.78e-08!63;UBERON:0002780!1.87e-07!39;UBERON:0001890!1.87e-07!39;UBERON:0006240!1.87e-07!39;UBERON:0000153!1.99e-07!94;UBERON:0003080!2.43e-07!40;UBERON:0007811!3.18e-07!86;UBERON:0000955!3.63e-07!50;UBERON:0006238!3.63e-07!50;UBERON:0002616!5.28e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,8.26e-17,34;UBERON:0001948,1.54e-12,5;UBERON:0002315,1.54e-12,5;UBERON:0002257,3.91e-12,3;UBERON:0001049,5.78e-12,52;UBERON:0005068,5.78e-12,52;UBERON:0006241,5.78e-12,52;UBERON:0007135,5.78e-12,52;UBERON:0000073,2.01e-11,54;UBERON:0010371,1.55e-10,73;UBERON:0002240,1.81e-10,6;UBERON:0005174,1.81e-10,6;UBERON:0001137,1.81e-10,6;UBERON:0003528,2.15e-09,29;UBERON:0002791,2.15e-09,29;UBERON:0001893,2.15e-09,29;UBERON:0002346,3.16e-09,64;UBERON:0003075,3.16e-09,64;UBERON:0007284,3.16e-09,64;UBERON:0001017,3.59e-09,73;UBERON:0001016,7.50e-09,75;UBERON:0004121,1.25e-08,95;UBERON:0000924,1.25e-08,95;UBERON:0006601,1.25e-08,95;UBERON:0002780,3.04e-08,39;UBERON:0001890,3.04e-08,39;UBERON:0006240,3.04e-08,39;UBERON:0003080,5.38e-08,40;UBERON:0000369,1.30e-07,5;UBERON:0002435,1.30e-07,5;UBERON:0000204,1.30e-07,5;UBERON:0010082,1.30e-07,5;UBERON:0002616,9.83e-07,46 | |||
|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0.522399578277871,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.304130793658544,0.183546752161682,0.782391344348039,0.65407546914134,0,0.58328969722285,0.139986421625363,0,0,0,0,0,0.286533439938757,0,0.809265843438391,3.70293685490423,0.633831403506179,0,0,0,0,0,0.299600110518405,0.384218305321555,2.7996195323289,2.97013064329719,1.26194976810829,0.856952953211411,1.54607978666129,0.857435594504678,1.15014565221884,0.919218786610021,0,0.255374676170375,0.768032666281217,1.84640802822271,1.28082701043374,2.6045668527838,0,0.56276261003168,0.30559649555362,2.06240009831567,1.99320353118744,1.1183966749518,0,0,0.289864488701678,0,0,0,0,0,0,0,0,0,0.563373679106722,0,0,0,0.216491041011214,0.253359865475099,0,0.11418387971906,0,0,0.346970653532272,0.304465478312141,0,0.150722640552623,0,0,0,0,0,0,0.220841518460394,0,0,0,0,0,0.239630249011841,0,0,0.149790639404823,0,0.628271760564322,0.695297280769106,0,0,0,0.611036183101898,0,0,0,0.910843100738926,0,0.540186389416048,0.452114453507145,0.476255494059295,0.512454881139399,0.281105173679186,0.517406741478031,0.215567992932842,0,0.175951124163949,0.219195732427575,0.278047249225598,0.348252166522167,1.02891068203972,0.199034266818493,0,0,0,0.207125772535502,0,0.180062061461015,0.473489471170421,0.393528463494808,0.308534225774757,0,0,0,0.16455984991348,0.32833492815819,0,0,0.219550115291051,0,0.210289948564127,1.44066457330998,0,0,1.06644125267617,0.232236671860439,0.128867461322093,0.605050573870028,0,0,0,0,0,0.198956472041151,0,0,0.216138049874694,0,0.189667900953082,0.685491075658373,0,1.22190796707189,0.581857461502877,0.210407459670956,0.252946148497029,0,0,0,0,0.333690211432188,0,0,0,0,0,0.287696137450811,0,0,1.43768206527355,0,0,0,0.179397413521912,0,0.184753190166605,0.189491411770485,0.325929952884052,0.169745085775188,0,0,0,0,0.788175720530955,1.10732344824387,0.478364305972461,0.163863314715738,0,0,0,0,0,0,0.321101179975584,0,0.163934945376675,0,0.631016438832513,0.780877488593277,0.861693590931196,0.477937595905104,0,0.283076530788832,0.404810701674894,0.292255857911312,0.395287777946524,0.321321316421807,0.141940085208269,0.178065603667255,0.651547837414304,0.659880491890142,0,0.485561272309963,0.302323556964751,0.377210159511796,0,0.307435147943927,0.258428293168221,0,0,0,0,0,0,1.62054984628179,0.388076051348264,0.643011105094777,0.532020700926821,0.713475270408282,0.658196082408484,0.304464949114599,0,0,0,0.98931751764888,0.484393280087717,1.14594557363496,1.67121281604391,0.656563598980245,0,0.18542530201051,0,0.206386867963223,0.185194527369712,0.376736914009382,0.27338845544205,0.457556346413045,0.169978429993855,0,0.138199973804424,0.954670618015114,0,0.203319467126849,0,0.418176592028937,0.218362563746178,0.404593039154462,0.165306911450672,0,0.388844919875379,0,0,0.149516546043979,0.165458490457098,0.388902376688095,0,0.506868376472335,0.469428954583016,0.5208175393758,0.104859344425711,0,0,0,0,0.821687657318618,0.25984164595559,0.179026695667481,0.39736270956253,0.961563596159751,0.590758108698309,0.302899349844443,0.381034033274999,0.504130925684203,0.38983152295901,0.481059208201647,0.467507608726276,0,0.221985953374065,0.179427713218951,0,0.19318959403219,0,0.36630324853453,0.214368379079066,0.501572104035363,1.12950368523413,0.460325236507177,0.572895513439397,0.515559547031063,0,0,0,0,0.453142408984205,0.51776031175182,0.415149390336707,0.798049746802062,0.512200817262403,0.243106717068294,0,0,0,0.412070114477788,0,0,0,0.188626341386076,0.0936415074698824,0.128050304809739,0.229741875822453,0.476293691283074,0,0.192909220463705,0.412085900803307,0.588795680537589,1.02860775715625,0.177475806159338,0.238436189947321,0.290692833264657,0.0941093804153306,0.0846146078916765,0.365855945745545,0.526139422875686,0,1.12228454331548,0.237270036248348,0.197008964751127,0,0.309873682371932,0.192906610981141,0.749431733813838,0.233931608445408,0,0.191288332068843,0,0 | |||
|short_description=p@chr1:173934659..173934666,- | |||
}} |
Revision as of 19:43, 13 September 2013
Short description: | p@chr1:173934659..173934666, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:173934659..173934666, - |
Coexpression cluster: | MCL_coexpression_mm9:1425 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.29e-22 | 23 |
neuroblast (sensu Vertebrata) | 2.29e-22 | 23 |
neuron | 6.33e-15 | 33 |
neuronal stem cell | 6.33e-15 | 33 |
neuroblast | 6.33e-15 | 33 |
electrically signaling cell | 6.33e-15 | 33 |
striatum neuron | 2.13e-12 | 3 |
electrically responsive cell | 2.74e-12 | 39 |
electrically active cell | 2.74e-12 | 39 |
neuron of the ventral spinal cord | 3.91e-12 | 3 |
neural cell | 6.11e-11 | 43 |
ectodermal cell | 1.22e-10 | 44 |
neurectodermal cell | 1.22e-10 | 44 |
neuron of cerebral cortex | 1.29e-10 | 6 |
Ontology term | p-value | n |
---|---|---|
gray matter | 8.26e-17 | 34 |
regional part of spinal cord | 1.54e-12 | 5 |
gray matter of spinal cord | 1.54e-12 | 5 |
ventral horn of spinal cord | 3.91e-12 | 3 |
neural tube | 5.78e-12 | 52 |
neural rod | 5.78e-12 | 52 |
future spinal cord | 5.78e-12 | 52 |
neural keel | 5.78e-12 | 52 |
regional part of nervous system | 2.01e-11 | 54 |
ecto-epithelium | 1.55e-10 | 73 |
spinal cord | 1.81e-10 | 6 |
dorsal region element | 1.81e-10 | 6 |
dorsum | 1.81e-10 | 6 |
brain grey matter | 2.15e-09 | 29 |
regional part of telencephalon | 2.15e-09 | 29 |
telencephalon | 2.15e-09 | 29 |
neurectoderm | 3.16e-09 | 64 |
neural plate | 3.16e-09 | 64 |
presumptive neural plate | 3.16e-09 | 64 |
central nervous system | 3.59e-09 | 73 |
nervous system | 7.50e-09 | 75 |
ectoderm-derived structure | 1.25e-08 | 95 |
ectoderm | 1.25e-08 | 95 |
presumptive ectoderm | 1.25e-08 | 95 |
regional part of forebrain | 3.04e-08 | 39 |
forebrain | 3.04e-08 | 39 |
future forebrain | 3.04e-08 | 39 |
anterior neural tube | 5.38e-08 | 40 |
corpus striatum | 1.30e-07 | 5 |
striatum | 1.30e-07 | 5 |
ventral part of telencephalon | 1.30e-07 | 5 |
future corpus striatum | 1.30e-07 | 5 |
regional part of brain | 9.83e-07 | 46 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.